SUPERFAMILY 1.75 HMM library and genome assignments server


DNA mismatch repair protein MutL superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   DNA mismatch repair protein MutL [ 118115]
Superfamily:   DNA mismatch repair protein MutL [ 118116]
Families:   DNA mismatch repair protein MutL [ 118117]


Superfamily statistics
Genomes (2,504) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 3,070 6,729 1
Proteins 2,994 6,668 1


Functional annotation
General category Information
Detailed category DNA replication/repair

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular aromatic compound metabolic process 5.608e-13 Least Informative Direct
Biological Process (BP) nitrogen compound metabolic process 1.412e-11 Least Informative Direct
Biological Process (BP) cellular macromolecule metabolic process 2.683e-10 Least Informative Direct
Biological Process (BP) single-organism cellular process 2.5e-05 Least Informative Direct
Biological Process (BP) heterocycle metabolic process 4.004e-13 Least Informative Direct
Biological Process (BP) response to stimulus 1.161e-08 Least Informative Direct
Biological Process (BP) organic cyclic compound metabolic process 2.247e-12 Least Informative Direct
Biological Process (BP) localization 0.05513 Least Informative Inherited
Biological Process (BP) cellular component organization or biogenesis 0.03034 Least Informative Inherited
Biological Process (BP) multicellular organismal process 0.288 Least Informative Inherited
Biological Process (BP) developmental process 0.1989 Least Informative Inherited
Biological Process (BP) reproduction 3.743e-12 Moderately Informative Direct
Biological Process (BP) immune system process 0.0001943 Moderately Informative Direct
Biological Process (BP) macromolecule localization 9.59e-05 Moderately Informative Direct
Biological Process (BP) cellular response to stress 0 Moderately Informative Direct
Biological Process (BP) organelle organization 0.06424 Moderately Informative Inherited
Biological Process (BP) cellular component biogenesis 0.02154 Moderately Informative Inherited
Biological Process (BP) DNA metabolic process 0 Informative Direct
Biological Process (BP) response to DNA damage stimulus 0 Informative Direct
Biological Process (BP) cell cycle process 1.108e-12 Informative Direct
Biological Process (BP) cellular process involved in reproduction 0 Informative Direct
Biological Process (BP) chromosome organization 3.318e-07 Informative Direct
Biological Process (BP) meiosis 0 Highly Informative Direct
Biological Process (BP) DNA recombination 0.01947 Highly Informative Inherited
Molecular Function (MF) binding 0.008526 Least Informative Inherited
Molecular Function (MF) nucleic acid binding 1.331e-08 Moderately Informative Direct
Molecular Function (MF) DNA binding 1.666e-10 Informative Direct
Molecular Function (MF) chromatin binding 7.485e-06 Informative Direct
Cellular Component (CC) protein complex 5.354e-10 Least Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 0.752 Least Informative Inherited
Cellular Component (CC) intracellular organelle part 0.002167 Least Informative Inherited
Cellular Component (CC) intracellular non-membrane-bounded organelle 0.07066 Least Informative Inherited
Cellular Component (CC) nuclear part 0.003364 Moderately Informative Inherited
Cellular Component (CC) intracellular organelle lumen 0.6854 Moderately Informative Inherited
Cellular Component (CC) chromosome 0.008857 Informative Inherited
Cellular Component (CC) condensed chromosome 2.585e-09 Highly Informative Direct
Cellular Component (CC) nuclear chromosome part 0.003498 Highly Informative Inherited

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processDNA damage0Moderately InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a DNA mismatch repair protein MutL domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the DNA mismatch repair protein MutL superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]