SUPERFAMILY 1.75 HMM library and genome assignments server

LEA14-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   Immunoglobulin-like beta-sandwich [ 48725] (28)
Superfamily:   LEA14-like [ 117070]
Families:   LEA14-like [ 117071]


Superfamily statistics
Genomes (526) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 2,032 2,731 1
Proteins 1,829 2,529 1


Functional annotation
General category Other
Detailed category Unknown function

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) localization 0.1152 Least Informative Inherited
Biological Process (BP) developmental process 0.363 Least Informative Inherited
Biological Process (BP) multicellular organismal process 0.8494 Least Informative Inherited
Biological Process (BP) cellular component organization or biogenesis 0.1778 Least Informative Inherited
Biological Process (BP) single-organism cellular process 1 Least Informative Inherited
Biological Process (BP) cellular localization 0.0002732 Moderately Informative Direct
Biological Process (BP) cell differentiation 1 Moderately Informative Inherited
Biological Process (BP) nervous system development 0.01517 Moderately Informative Inherited
Biological Process (BP) anatomical structure morphogenesis 0.004595 Moderately Informative Inherited
Biological Process (BP) cellular component morphogenesis 0.00002202 Informative Direct
Biological Process (BP) cell projection organization 0.0004195 Informative Direct
Biological Process (BP) generation of neurons 0.002315 Informative Inherited
Biological Process (BP) organelle localization 0.001196 Informative Inherited
Biological Process (BP) neuron projection development 0.00008333 Highly Informative Direct
Biological Process (BP) cell projection morphogenesis 0.1858 Highly Informative Inherited
Biological Process (BP) cell morphogenesis involved in differentiation 0.02368 Highly Informative Inherited
Cellular Component (CC) membrane 0.01208 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.8979 Least Informative Inherited
Cellular Component (CC) intracellular organelle part 0.371 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 0.2371 Least Informative Inherited
Cellular Component (CC) bounding membrane of organelle 0.0002094 Moderately Informative Direct
Cellular Component (CC) vacuolar part 0.0000002901 Informative Direct
Cellular Component (CC) lytic vacuole 0.0000009912 Informative Direct

Document: GO annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)flower0Least InformativeDirect
Plant ANatomical entity (PAN)inflorescence0Least InformativeDirect

Document: AP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport0.0001407Least InformativeDirect
Cellular componentMembrane0.000001048Least InformativeDirect
Cellular componentEndosome0.000000000009278Moderately InformativeDirect
Cellular componentLysosome0.0000000000001556InformativeDirect
DomainTransmembrane0.00000001322Least InformativeDirect
DomainSignal-anchor0.00000576InformativeDirect
Post-translational modificationGlycoprotein0.00002015Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a LEA14-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the LEA14-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) · Internal database links ]