SUPERFAMILY 1.75 HMM library and genome assignments server


LEA14-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   Immunoglobulin-like beta-sandwich [ 48725] (28)
Superfamily:   LEA14-like [ 117070]
Families:   LEA14-like [ 117071]


Superfamily statistics
Genomes (492) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 1,608 1,729 1
Proteins 1,466 1,567 1


Functional annotation
General category Other
Detailed category Unknown function

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular component organization or biogenesis 0.1472 Least Informative Inherited
Biological Process (BP) localization 0.09963 Least Informative Inherited
Biological Process (BP) multicellular organismal process 0.8785 Least Informative Inherited
Biological Process (BP) developmental process 0.3495 Least Informative Inherited
Biological Process (BP) single-organism cellular process 0.9166 Least Informative Inherited
Biological Process (BP) cellular localization 0.0002316 Moderately Informative Direct
Biological Process (BP) anatomical structure morphogenesis 0.004328 Moderately Informative Inherited
Biological Process (BP) single-organism developmental process 0.08782 Moderately Informative Inherited
Biological Process (BP) nervous system development 0.01389 Moderately Informative Inherited
Biological Process (BP) cell differentiation 1 Moderately Informative Inherited
Biological Process (BP) cell projection organization 0.0003674 Informative Direct
Biological Process (BP) cellular component morphogenesis 1.986e-05 Informative Direct
Biological Process (BP) organelle localization 0.001127 Informative Inherited
Biological Process (BP) generation of neurons 0.002133 Informative Inherited
Biological Process (BP) neuron projection development 7.693e-05 Highly Informative Direct
Biological Process (BP) cell part morphogenesis 0.2631 Highly Informative Inherited
Biological Process (BP) cell morphogenesis involved in differentiation 0.02789 Highly Informative Inherited
Cellular Component (CC) intracellular organelle part 0.3241 Least Informative Inherited
Cellular Component (CC) membrane 0.007492 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 0.2182 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.8826 Least Informative Inherited
Cellular Component (CC) organelle membrane 0.001316 Moderately Informative Inherited
Cellular Component (CC) lytic vacuole 9.476e-07 Informative Direct
Cellular Component (CC) vacuolar part 3.505e-07 Informative Direct
Cellular Component (CC) lysosome 3.522e-07 Highly Informative Direct
Cellular Component (CC) vacuolar membrane 2.246e-07 Highly Informative Direct

Document: GO annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)flower0Least InformativeDirect
Plant ANatomical entity (PAN)inflorescence0Least InformativeDirect

Document: AP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Cellular componentMembrane1.034e-06Least InformativeDirect
Cellular componentEndosome8.806e-12Moderately InformativeDirect
Cellular componentLysosome1.588e-13InformativeDirect
DomainTransmembrane1.342e-08Least InformativeDirect
DomainSignal-anchor5.701e-06InformativeDirect
Post-translational modificationGlycoprotein1.962e-05Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a LEA14-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the LEA14-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) · Internal database links ]