SUPERFAMILY 1.75 HMM library and genome assignments server

Home > SCOP hierarchy > TrmE connector domain superfamily

TrmE connector domain superfamily

SCOP classification

Root:	SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:	All alpha proteins [ 46456] (284)
Fold:	Four-helical up-and-down bundle [ 47161] (28)
Superfamily:	TrmE connector domain [ 116878]
Families:	TrmE connector domain [ 116879]

Superfamily statistics

	Genomes (1,359)	Uniprot 2013_05	PDB chains (SCOP 1.75)
Domains	1,415	4,788	0
Proteins	1,413	4,788	0

Functional annotation

General category	coiled coil
Detailed category	The code refers to 4-helix bundles. These are a type of structure which frequently contain coiled-coils.

Document: Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)

	GO term	FDR (all)	SDFO level	Annotation (direct or inherited)
Cellular Component (CC)	cytoplasmic part	0.0001212	Least Informative	Direct
Cellular Component (CC)	intracellular membrane-bounded organelle	0.006923	Least Informative	Inherited

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)

	KW term	FDR (all)	SDKW level	Annotation (direct or inherited)
Biological process	tRNA processing	0	Informative	Direct
Cellular component	Cytoplasm	0	Least Informative	Direct
Molecular function	Metal-binding	0	Least Informative	Direct
Molecular function	Nucleotide-binding	0	Least Informative	Direct
Molecular function	Magnesium	0	Moderately Informative	Direct
Molecular function	GTP-binding	0	Informative	Direct
Molecular function	Potassium	0	Informative	Direct
Post-translational modification	Hydrolase	0	Least Informative	Direct

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.

Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.

Browse and view proteins in genomes which have different domain combinations including a TrmE connector domain domain.

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.

Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the TrmE connector domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]