SUPERFAMILY 1.75 HMM library and genome assignments server

Rps17e-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   DNA/RNA-binding 3-helical bundle [ 46688] (14)
Superfamily:   Rps17e-like [ 116820]
Families:   Rps17e-like [ 116821]


Superfamily statistics
Genomes (638) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 897 1,185 1
Proteins 897 1,184 1


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 0.00002877 Least Informative Direct
Biological Process (BP) cellular macromolecule metabolic process 0.0005371 Least Informative Direct
Biological Process (BP) protein metabolic process 0.005411 Least Informative Inherited
Biological Process (BP) cellular macromolecule biosynthetic process 0.0001052 Moderately Informative Direct
Biological Process (BP) gene expression 0.0005659 Moderately Informative Direct
Molecular Function (MF) structural molecule activity 0.000000008279 Moderately Informative Direct
Molecular Function (MF) structural constituent of ribosome 0.00000000002458 Informative Direct
Cellular Component (CC) cytoplasmic part 0.0000007496 Least Informative Direct
Cellular Component (CC) non-membrane-bounded organelle 0.00006711 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.0459 Least Informative Inherited
Cellular Component (CC) ribonucleoprotein complex 0.000000001198 Moderately Informative Direct
Cellular Component (CC) cytosol 0.00001553 Moderately Informative Direct
Cellular Component (CC) small ribosomal subunit 0 Informative Direct
Cellular Component (CC) cytosolic ribosome 0.001576 Informative Inherited
Cellular Component (CC) cytosolic small ribosomal subunit 0 Highly Informative Direct

Document: GO annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)guard cell0Least InformativeDirect

Document: AP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationRibosomal protein0InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Rps17e-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Rps17e-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) · Internal database links ]