SUPERFAMILY 1.75 HMM library and genome assignments server


Rps17e-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   DNA/RNA-binding 3-helical bundle [ 46688] (14)
Superfamily:   Rps17e-like [ 116820]
Families:   Rps17e-like [ 116821]


Superfamily statistics
Genomes (589) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 846 901 1
Proteins 846 900 1


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 0.0001569 Least Informative Direct
Biological Process (BP) cellular macromolecule metabolic process 0.002022 Least Informative Inherited
Biological Process (BP) protein metabolic process 0.01149 Least Informative Inherited
Biological Process (BP) cellular macromolecule biosynthetic process 0.0004098 Moderately Informative Direct
Biological Process (BP) gene expression 0.001395 Moderately Informative Inherited
Biological Process (BP) translation 6.224e-09 Informative Direct
Cellular Component (CC) cytoplasmic part 1.164e-07 Least Informative Direct
Cellular Component (CC) intracellular non-membrane-bounded organelle 2.189e-05 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.04111 Least Informative Inherited
Cellular Component (CC) ribonucleoprotein complex 1.671e-09 Moderately Informative Direct
Cellular Component (CC) cytosol 1.453e-05 Moderately Informative Direct
Cellular Component (CC) small ribosomal subunit 0 Informative Direct
Cellular Component (CC) cytosolic ribosome 0.001905 Informative Inherited
Cellular Component (CC) cytosolic small ribosomal subunit 0 Highly Informative Direct

Document: GO annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)guard cell0Least InformativeDirect

Document: AP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationRibosomal protein0InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Rps17e-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Rps17e-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) · Internal database links ]