SUPERFAMILY 1.75 HMM library and genome assignments server


Gamma-glutamyl cyclotransferase-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Gamma-glutamyl cyclotransferase-like [ 110856]
Superfamily:   Gamma-glutamyl cyclotransferase-like [ 110857]
Families:   Gamma-glutamyl cyclotransferase-like [ 110858] (3)


Superfamily statistics
Genomes (1,586) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 3,623 0 3
Proteins 3,545 0 3


Functional annotation
General category Other
Detailed category Unknown function

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)regulation of cellular process0.48011Least InformativeInherited
Biological Process (BP)response to stimulus0.6581Least InformativeInherited
Biological Process (BP)single-organism metabolic process0.00078860.0795Least InformativeInherited
Biological Process (BP)single-organism cellular process11Least InformativeInherited
Biological Process (BP)nitrogen compound metabolic process0.0079130.298Least InformativeInherited
Biological Process (BP)cellular amino acid metabolic process4.612e-089.181e-07Moderately InformativeDirect
Biological Process (BP)signal transduction0.028430.4193Moderately InformativeInherited
Biological Process (BP)organic substance catabolic process0.00045310.003498Moderately InformativeInherited
Biological Process (BP)cellular catabolic process0.00040310.001321Moderately InformativeInherited
Biological Process (BP)cellular modified amino acid metabolic process0.00035982.109e-05InformativeDirect
Biological Process (BP)carboxylic acid catabolic process0.00017191.645e-05InformativeDirect
Biological Process (BP)programmed cell death0.0010710.001898InformativeInherited
Molecular Function (MF)transferase activity, transferring acyl groups1.736e-141.354e-12InformativeDirect
Molecular Function (MF)transferase activity, transferring amino-acyl groups00Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) regulation of cellular process 1 Least Informative Inherited
Biological Process (BP) response to stimulus 1 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 0.0795 Least Informative Inherited
Biological Process (BP) single-organism cellular process 1 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 0.298 Least Informative Inherited
Biological Process (BP) cellular amino acid metabolic process 9.181e-07 Moderately Informative Direct
Biological Process (BP) signal transduction 0.4193 Moderately Informative Inherited
Biological Process (BP) organic substance catabolic process 0.003498 Moderately Informative Inherited
Biological Process (BP) cellular catabolic process 0.001321 Moderately Informative Inherited
Biological Process (BP) cellular modified amino acid metabolic process 2.109e-05 Informative Direct
Biological Process (BP) carboxylic acid catabolic process 1.645e-05 Informative Direct
Biological Process (BP) programmed cell death 0.001898 Informative Inherited
Molecular Function (MF) transferase activity, transferring acyl groups 1.354e-12 Informative Direct
Molecular Function (MF) transferase activity, transferring amino-acyl groups 0 Highly Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Aminoacyltransferases0InformativeDirect

Document: EC annotation of SCOP domains

Worm Phenotype (WP)

(show details) Document: WP annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)guard cell0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.12 twelve leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.08 eight leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.10 ten leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.04 four leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.06 six leaves visible stage0Least InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Acyltransferases0Moderately InformativeDirect
Enzyme Commission (EC)Aminoacyltransferases0Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Post-translational modificationTransferase1.772e-09Least InformativeDirect
Post-translational modificationAcyltransferase0InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Worm Phenotype (WP) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 3 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Gamma-glutamyl cyclotransferase-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 3 hidden Markov models representing the Gamma-glutamyl cyclotransferase-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Worm Phenotype (WP) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]