SUPERFAMILY 1.75 HMM library and genome assignments server


Hypothetical protein SAV1430 superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Hypothetical protein SAV1430 [ 110835]
Superfamily:   Hypothetical protein SAV1430 [ 110836]
Families:   Hypothetical protein SAV1430 [ 110837]


Superfamily statistics
Genomes (965) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 1,192 9,047 1
Proteins 1,159 8,953 1


Functional annotation
General category Other
Detailed category Unknown function

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular component organization or biogenesis 0.3474 Least Informative Inherited
Biological Process (BP) biosynthetic process 0.08401 Least Informative Inherited
Biological Process (BP) cellular component biogenesis 0.004932 Moderately Informative Inherited
Biological Process (BP) iron-sulfur cluster assembly 1.164e-10 Highly Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 0.17 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 0.01479 Least Informative Inherited

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processVirulence4.794e-12InformativeDirect
Cellular componentMitochondrion0Moderately InformativeDirect
DomainTransit peptide0Moderately InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR014824 SSF110836 Protein matches
Abstract

This protein is found at the N terminus of NifU (from NIF system) and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the assembly of iron-sulphur clusters, functioning as scaffolds [PubMed12886008, PubMed14993221].


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Hypothetical protein SAV1430 domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Hypothetical protein SAV1430 superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]