SUPERFAMILY 1.75 HMM library and genome assignments server

Chlorophyll a-b binding protein superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Membrane and cell surface proteins and peptides [ 56835] (58)
Fold:   Chlorophyll a-b binding protein [ 103510]
Superfamily:   Chlorophyll a-b binding protein [ 103511]
Families:   Chlorophyll a-b binding protein [ 103512]


Superfamily statistics
Genomes (157) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 4,700 5,001 2
Proteins 4,520 4,885 2


Functional annotation
General category Metabolism
Detailed category E- transfer

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)response to stimulus0.0000071060.000005693Least InformativeDirect
Biological Process (BP)cellular component organization or biogenesis0.00011560.0001614Least InformativeDirect
Biological Process (BP)single-organism metabolic process0.39270.1241Least InformativeInherited
Biological Process (BP)biosynthetic process0.068590.02547Least InformativeInherited
Biological Process (BP)nitrogen compound metabolic process0.076720.01173Least InformativeInherited
Biological Process (BP)heterocycle metabolic process0.22170.04568Least InformativeInherited
Biological Process (BP)cellular aromatic compound metabolic process0.22760.05309Least InformativeInherited
Biological Process (BP)organic cyclic compound metabolic process0.16230.02628Least InformativeInherited
Biological Process (BP)cellular macromolecule metabolic process0.30990.6233Least InformativeInherited
Biological Process (BP)sulfur compound metabolic process0.00057350.000005075Moderately InformativeDirect
Biological Process (BP)response to abiotic stimulus0.00000000048260.0000000000003331Moderately InformativeDirect
Biological Process (BP)response to organic substance0.00000045170.0000001597Moderately InformativeDirect
Biological Process (BP)gene expression0.0000029770.00000008046Moderately InformativeDirect
Biological Process (BP)RNA metabolic process0.00000049340.00000002573Moderately InformativeDirect
Biological Process (BP)cellular component biogenesis0.00099220.000006785Moderately InformativeDirect
Biological Process (BP)response to oxygen-containing compound0.0008480.0000362Moderately InformativeDirect
Biological Process (BP)single-organism biosynthetic process0.015420.0001354Moderately InformativeInherited
Biological Process (BP)organonitrogen compound biosynthetic process0.0065660.0004273Moderately InformativeInherited
Biological Process (BP)macromolecular complex subunit organization0.0027130.001777Moderately InformativeInherited
Biological Process (BP)regulation of localization0.002540.00001389Moderately InformativeInherited
Biological Process (BP)cellular amino acid metabolic process0.015830.000639Moderately InformativeInherited
Biological Process (BP)sulfur amino acid metabolic process0.00025910.000003812InformativeDirect
Biological Process (BP)RNA processing0.0000000057450.000000000009913InformativeDirect
Biological Process (BP)response to light stimulus00InformativeDirect
Biological Process (BP)ribonucleoprotein complex biogenesis0.00000071170.000000004313InformativeDirect
Biological Process (BP)cellular macromolecular complex assembly0.0000015370.00001234InformativeDirect
Biological Process (BP)ncRNA metabolic process0.00000000018580.00000000000002793InformativeDirect
Biological Process (BP)regulation of ion transport0.0000000036830.000000000001136InformativeDirect
Biological Process (BP)sulfur compound biosynthetic process0.000015880.00000002495InformativeDirect
Biological Process (BP)alpha-amino acid biosynthetic process0.000018390.0000000169InformativeDirect
Biological Process (BP)rRNA processing0.00000000000021540Highly InformativeDirect
Biological Process (BP)serine family amino acid metabolic process0.0000003750.00000000005241Highly InformativeDirect
Biological Process (BP)response to carbohydrate stimulus0.00000000013320.0000000000002343Highly InformativeDirect
Biological Process (BP)regulation of proton transport0.0000000000000016880Highly InformativeDirect
Molecular Function (MF)binding0.2210.9205Least InformativeInherited
Molecular Function (MF)tetrapyrrole binding0.0000000029130.000000001314InformativeDirect
Cellular Component (CC)membrane00Least InformativeDirect
Cellular Component (CC)intracellular membrane-bounded organelle00Least InformativeDirect
Cellular Component (CC)cytoplasmic part00Least InformativeDirect
Cellular Component (CC)intracellular organelle part0.00000000007060.00000000001219Least InformativeDirect
Cellular Component (CC)plastid00InformativeDirect
Cellular Component (CC)chloroplast stroma11Highly InformativeInherited

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) response to stimulus 0.000005693 Least Informative Direct
Biological Process (BP) cellular component organization or biogenesis 0.0001614 Least Informative Direct
Biological Process (BP) single-organism metabolic process 0.1241 Least Informative Inherited
Biological Process (BP) biosynthetic process 0.02547 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 0.01173 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 0.04568 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 0.05309 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 0.02628 Least Informative Inherited
Biological Process (BP) cellular macromolecule metabolic process 0.6233 Least Informative Inherited
Biological Process (BP) cellular amino acid metabolic process 0.000639 Moderately Informative Direct
Biological Process (BP) sulfur compound metabolic process 0.000005075 Moderately Informative Direct
Biological Process (BP) response to abiotic stimulus 0.0000000000003331 Moderately Informative Direct
Biological Process (BP) response to organic substance 0.0000001597 Moderately Informative Direct
Biological Process (BP) gene expression 0.00000008046 Moderately Informative Direct
Biological Process (BP) RNA metabolic process 0.00000002573 Moderately Informative Direct
Biological Process (BP) regulation of localization 0.00001389 Moderately Informative Direct
Biological Process (BP) cellular component biogenesis 0.000006785 Moderately Informative Direct
Biological Process (BP) single-organism biosynthetic process 0.0001354 Moderately Informative Direct
Biological Process (BP) organonitrogen compound biosynthetic process 0.0004273 Moderately Informative Direct
Biological Process (BP) response to oxygen-containing compound 0.0000362 Moderately Informative Direct
Biological Process (BP) macromolecular complex subunit organization 0.001777 Moderately Informative Inherited
Biological Process (BP) sulfur amino acid metabolic process 0.000003812 Informative Direct
Biological Process (BP) RNA processing 0.000000000009913 Informative Direct
Biological Process (BP) response to light stimulus 0 Informative Direct
Biological Process (BP) ribonucleoprotein complex biogenesis 0.000000004313 Informative Direct
Biological Process (BP) cellular macromolecular complex assembly 0.00001234 Informative Direct
Biological Process (BP) ncRNA metabolic process 0.00000000000002793 Informative Direct
Biological Process (BP) regulation of ion transport 0.000000000001136 Informative Direct
Biological Process (BP) sulfur compound biosynthetic process 0.00000002495 Informative Direct
Biological Process (BP) alpha-amino acid biosynthetic process 0.0000000169 Informative Direct
Biological Process (BP) rRNA processing 0 Highly Informative Direct
Biological Process (BP) serine family amino acid metabolic process 0.00000000005241 Highly Informative Direct
Biological Process (BP) response to carbohydrate stimulus 0.0000000000002343 Highly Informative Direct
Biological Process (BP) regulation of proton transport 0 Highly Informative Direct
Molecular Function (MF) binding 0.9205 Least Informative Inherited
Molecular Function (MF) tetrapyrrole binding 0.000000001314 Informative Direct
Cellular Component (CC) membrane 0 Least Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 0 Least Informative Direct
Cellular Component (CC) cytoplasmic part 0 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.00000000001219 Least Informative Direct
Cellular Component (CC) organelle envelope 0.0001294 Moderately Informative Direct
Cellular Component (CC) plastid 0 Informative Direct
Cellular Component (CC) chloroplast stroma 1 Highly Informative Inherited

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Lyases0Least InformativeDirect
Enzyme Commission (EC)Sole sub-subclass for lyases that do not belong in1InformativeInherited

Document: EC annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)guard cell0Least InformativeDirect
Plant ANatomical entity (PAN)cardinal part of multi-tissue plant structure0.3687Least InformativeInherited
Plant ANatomical entity (PAN)leaf0.3766Least InformativeInherited
Plant ANatomical entity (PAN)whole plant0.6617Least InformativeInherited
Plant ANatomical entity (PAN)shoot axis0.7525Least InformativeInherited
Plant ANatomical entity (PAN)portion of ground tissue0.0000000001971InformativeDirect
Plant ANatomical entity (PAN)fruit0.000001286InformativeDirect
Plant ANatomical entity (PAN)vascular system0.0001643InformativeDirect
Plant ANatomical entity (PAN)cortex4.098e-16Highly InformativeDirect
Plant ANatomical entity (PAN)shoot axis stele0.0000000000001359Highly InformativeDirect
Plant ANatomical entity (PAN)mesophyll1Highly InformativeInherited

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Lyases0Least InformativeDirect
Enzyme Commission (EC)Sole sub-subclass for lyases that do not belong in the other subclasses1Highly InformativeInherited

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processPhotosynthesis0InformativeDirect
Biological processHeme biosynthesis0Highly InformativeDirect
Biological processPorphyrin biosynthesis0Highly InformativeDirect
Cellular componentMembrane0Least InformativeDirect
Cellular componentPlastid0Moderately InformativeDirect
Cellular componentThylakoid0InformativeDirect
Cellular componentPhotosystem I0Highly InformativeDirect
Cellular componentPhotosystem II0Highly InformativeDirect
DomainTransmembrane0Least InformativeDirect
DomainTransit peptide0Moderately InformativeDirect
Molecular functionMetal-binding0Least InformativeDirect
Molecular functionMagnesium0Moderately InformativeDirect
Molecular functionIron0.0000009418Moderately InformativeDirect
Molecular functionChromophore0InformativeDirect
Molecular functionChlorophyll0Highly InformativeDirect
Post-translational modificationLyase0.00000000002611Moderately InformativeDirect
Post-translational modificationAcetylation0Least InformativeDirect
Post-translational modificationPhosphoprotein0Least InformativeDirect

Document: KW annotation of SCOP domains

UniProtKB UniPathway (UP)

(show details)
UP termFDR (all)SDUP levelAnnotation (direct or inherited)
UniPathway (UP)cofactor metabolism0Least InformativeDirect
UniPathway (UP)porphyrin-containing compound metabolism0Moderately InformativeDirect
UniPathway (UP)macrocycle metabolism0Moderately InformativeDirect

Document: UP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Chlorophyll a-b binding protein domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Chlorophyll a-b binding protein superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) · Internal database links ]