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Hypothetical protein PH1602 superfamily
SCOP classification
Superfamily statistics
Functional annotation
| General category | Other |
| Detailed category | Unknown function |
Document: Function annotation of SCOP domain superfamilies
Gene Ontology (high-quality) (show details)
Highlighted in gray are those with either FDR_singleton>0.001 or FDR_all>0.001
| GO term | FDR (singleton) | FDR (all) | IC level | SDFO level | Annotation (direct or inherited) |
| Biological Process (BP) | tRNA processing | 0 | 0 | 1.745 | -- | DIRECT |
| Biological Process (BP) | RNA splicing, via endonucleolytic cleavage and ligation | 0 | 0 | 2.699 | -- | DIRECT |
| Biological Process (BP) | tRNA splicing, via endonucleolytic cleavage and ligation | 0 | 0 | 2.699 | -- | DIRECT |
| Biological Process (BP) | RNA processing | 4.972e-13 | 4.539e-12 | 1.377 | -- | DIRECT |
| Biological Process (BP) | nucleic acid metabolic process | 9.809e-09 | 2.791e-07 | 0.9066 | -- | DIRECT |
| Biological Process (BP) | nucleobase-containing compound metabolic process | 9.963e-07 | 3.654e-06 | 0.7305 | -- | DIRECT |
| Biological Process (BP) | cellular nitrogen compound metabolic process | 1.911e-05 | 2.052e-05 | 0.585 | -- | DIRECT |
| Biological Process (BP) | RNA splicing | 0.0002455 | 0.0002021 | 1.854 | -- | DIRECT |
| Biological Process (BP) | ncRNA metabolic process | 0.0002976 | 3.182e-05 | 1.444 | -- | DIRECT |
| Biological Process (BP) | macromolecule metabolic process | 0.0003331 | 0.001548 | 0.4634 | -- | INHERITED FROM: gene expression || tRNA metabolic process || RNA splicing, via endonucleolytic cleavage and ligation || cellular macromolecule metabolic process || ncRNA metabolic process || RNA metabolic process || RNA splicing || nucleic acid metabolic process || RNA processing || tRNA processing || tRNA splicing, via endonucleolytic cleavage and ligation |
| Biological Process (BP) | cellular metabolic process | 0.02729 | 0.02732 | 0.2708 | -- | INHERITED FROM: tRNA metabolic process || RNA splicing, via endonucleolytic cleavage and ligation || ncRNA metabolic process || RNA splicing || RNA processing || heterocycle metabolic process || tRNA splicing, via endonucleolytic cleavage and ligation || cellular macromolecule metabolic process || nucleobase-containing compound metabolic process || RNA metabolic process || cellular nitrogen compound metabolic process || cellular aromatic compound metabolic process || nucleic acid metabolic process || tRNA processing |
| Biological Process (BP) | metabolic process | 0.1981 | 0.1681 | 0.2411 | -- | INHERITED FROM: tRNA metabolic process || RNA splicing, via endonucleolytic cleavage and ligation || ncRNA metabolic process || RNA splicing || RNA processing || heterocycle metabolic process || tRNA splicing, via endonucleolytic cleavage and ligation || gene expression || organic cyclic compound metabolic process || cellular macromolecule metabolic process || nucleobase-containing compound metabolic process || RNA metabolic process || cellular nitrogen compound metabolic process || nitrogen compound metabolic process || cellular aromatic compound metabolic process || nucleic acid metabolic process || tRNA processing |
| Biological Process (BP) | organic substance metabolic process | 0.03291 | 0.0337 | 0.2676 | -- | INHERITED FROM: tRNA metabolic process || RNA splicing, via endonucleolytic cleavage and ligation || ncRNA metabolic process || RNA splicing || RNA processing || tRNA splicing, via endonucleolytic cleavage and ligation || gene expression || organic cyclic compound metabolic process || cellular macromolecule metabolic process || nucleobase-containing compound metabolic process || RNA metabolic process || nucleic acid metabolic process || tRNA processing |
| Biological Process (BP) | primary metabolic process | 0.01413 | 0.01816 | 0.2976 | -- | INHERITED FROM: tRNA metabolic process || RNA splicing, via endonucleolytic cleavage and ligation || ncRNA metabolic process || nucleobase-containing compound metabolic process || RNA metabolic process || RNA splicing || nucleic acid metabolic process || RNA processing || tRNA processing || tRNA splicing, via endonucleolytic cleavage and ligation |
| Biological Process (BP) | biological_process | 0.009516 | 0.01136 | 0 | -- | INHERITED FROM: RNA splicing, via endonucleolytic cleavage and ligation || gene expression || nucleobase-containing compound metabolic process || RNA metabolic process || tRNA metabolic process || RNA splicing || RNA processing || tRNA splicing, via endonucleolytic cleavage and ligation || organic cyclic compound metabolic process || cellular macromolecule metabolic process || cellular nitrogen compound metabolic process || nucleic acid metabolic process || tRNA processing || nitrogen compound metabolic process || ncRNA metabolic process || heterocycle metabolic process || cellular aromatic compound metabolic process |
| Biological Process (BP) | cellular process | 0.3903 | 0.8175 | 0.1415 | -- | INHERITED FROM: RNA splicing, via endonucleolytic cleavage and ligation || nucleobase-containing compound metabolic process || RNA metabolic process || tRNA metabolic process || ncRNA metabolic process || RNA splicing || RNA processing || heterocycle metabolic process || tRNA splicing, via endonucleolytic cleavage and ligation || cellular macromolecule metabolic process || cellular nitrogen compound metabolic process || cellular aromatic compound metabolic process || nucleic acid metabolic process || tRNA processing |
| Biological Process (BP) | heterocycle metabolic process | 1.151e-05 | 1.262e-05 | 0.6308 | Least Informative | DIRECT |
| Biological Process (BP) | cellular aromatic compound metabolic process | 1.308e-05 | 1.624e-05 | 0.6271 | Least Informative | DIRECT |
| Biological Process (BP) | organic cyclic compound metabolic process | 3.15e-05 | 3.269e-05 | 0.5817 | Least Informative | DIRECT |
| Biological Process (BP) | cellular macromolecule metabolic process | 7.192e-05 | 0.00063 | 0.4976 | Least Informative | DIRECT |
| Biological Process (BP) | nitrogen compound metabolic process | 0.0001261 | 8.863e-05 | 0.5171 | Least Informative | DIRECT |
| Biological Process (BP) | RNA metabolic process | 1.096e-10 | 3.278e-09 | 1.086 | Moderately Informative | DIRECT |
| Biological Process (BP) | gene expression | 1.318e-09 | 1.088e-08 | 0.8729 | Moderately Informative | DIRECT |
| Biological Process (BP) | tRNA metabolic process | 1.598e-15 | 0 | 1.699 | Informative | DIRECT |
| Biological Process (BP) | ncRNA processing | 0.00612 | 0.0002175 | 1.553 | Informative | INHERITED FROM: tRNA processing || tRNA splicing, via endonucleolytic cleavage and ligation |
| Molecular Function (MF) | ligase activity, forming phosphoric ester bonds | 0 | 0 | 2.679 | -- | DIRECT |
| Molecular Function (MF) | RNA ligase activity | 0 | 0 | 2.679 | -- | DIRECT |
| Molecular Function (MF) | ligase activity | 2.137e-14 | 2.036e-13 | 1.356 | -- | DIRECT |
| Molecular Function (MF) | molecular_function | 0.04137 | 0.01846 | 0 | -- | INHERITED FROM: ligase activity || ligase activity, forming phosphoric ester bonds || RNA ligase activity |
| Molecular Function (MF) | catalytic activity | 0.09761 | 0.04606 | 0.2686 | -- | INHERITED FROM: ligase activity || ligase activity, forming phosphoric ester bonds || RNA ligase activity |
| Cellular Component (CC) | tRNA-splicing ligase complex | 0 | 0 | 2.542 | -- | DIRECT |
| Cellular Component (CC) | macromolecular complex | 0.001843 | 0.01619 | 0.4276 | -- | INHERITED FROM: tRNA-splicing ligase complex |
| Cellular Component (CC) | cellular_component | 0.02239 | 0.08658 | 0 | -- | INHERITED FROM: tRNA-splicing ligase complex |
| Cellular Component (CC) | intracellular part | 0.2983 | 0.586 | 0.1266 | -- | INHERITED FROM: tRNA-splicing ligase complex |
| Cellular Component (CC) | intracellular | 0.3113 | 0.5969 | 0.1266 | -- | INHERITED FROM: tRNA-splicing ligase complex |
| Cellular Component (CC) | cell part | 0.799 | 1 | 0.08068 | -- | INHERITED FROM: tRNA-splicing ligase complex |
| Cellular Component (CC) | cell | 0.8 | 1 | 0.08068 | -- | INHERITED FROM: tRNA-splicing ligase complex |
| Cellular Component (CC) | protein complex | 9.742e-05 | 0.002127 | 0.5639 | Least Informative | INHERITED FROM: tRNA-splicing ligase complex |
Document: GO annotation of SCOP domains
Gene Ontology (high-coverage) (show details)
Highlighted in gray are those with either FDR_singleton>0.001 or FDR_all>0.001
|
GO term |
FDR (all) |
IC level |
SDFO level |
Annotation (direct or inherited) |
| Biological Process (BP) |
tRNA processing |
0 |
1.745 |
-- |
DIRECT |
| Biological Process (BP) |
RNA splicing, via endonucleolytic cleavage and ligation |
0 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
tRNA splicing, via endonucleolytic cleavage and ligation |
0 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
RNA processing |
4.539e-12 |
1.377 |
-- |
DIRECT |
| Biological Process (BP) |
nucleic acid metabolic process |
2.791e-07 |
0.9066 |
-- |
DIRECT |
| Biological Process (BP) |
nucleobase-containing compound metabolic process |
3.654e-06 |
0.7305 |
-- |
DIRECT |
| Biological Process (BP) |
cellular nitrogen compound metabolic process |
2.052e-05 |
0.585 |
-- |
DIRECT |
| Biological Process (BP) |
RNA splicing |
0.0002021 |
1.854 |
-- |
DIRECT |
| Biological Process (BP) |
ncRNA metabolic process |
3.182e-05 |
1.444 |
-- |
DIRECT |
| Biological Process (BP) |
macromolecule metabolic process |
0.001548 |
0.4634 |
-- |
INHERITED FROM: gene expression || tRNA metabolic process || RNA splicing, via endonucleolytic cleavage and ligation || cellular macromolecule metabolic process || ncRNA metabolic process || RNA metabolic process || RNA splicing || nucleic acid metabolic process || RNA processing || ncRNA processing || tRNA processing || tRNA splicing, via endonucleolytic cleavage and ligation |
| Biological Process (BP) |
cellular metabolic process |
0.02732 |
0.2708 |
-- |
INHERITED FROM: tRNA metabolic process || RNA splicing, via endonucleolytic cleavage and ligation || ncRNA metabolic process || RNA splicing || RNA processing || heterocycle metabolic process || tRNA splicing, via endonucleolytic cleavage and ligation || cellular macromolecule metabolic process || nucleobase-containing compound metabolic process || RNA metabolic process || cellular nitrogen compound metabolic process || cellular aromatic compound metabolic process || nucleic acid metabolic process || ncRNA processing || tRNA processing |
| Biological Process (BP) |
metabolic process |
0.1681 |
0.2411 |
-- |
INHERITED FROM: tRNA metabolic process || RNA splicing, via endonucleolytic cleavage and ligation || ncRNA metabolic process || RNA splicing || RNA processing || heterocycle metabolic process || tRNA splicing, via endonucleolytic cleavage and ligation || gene expression || organic cyclic compound metabolic process || cellular macromolecule metabolic process || nucleobase-containing compound metabolic process || RNA metabolic process || cellular nitrogen compound metabolic process || nitrogen compound metabolic process || cellular aromatic compound metabolic process || nucleic acid metabolic process || ncRNA processing || tRNA processing |
| Biological Process (BP) |
organic substance metabolic process |
0.0337 |
0.2676 |
-- |
INHERITED FROM: tRNA metabolic process || RNA splicing, via endonucleolytic cleavage and ligation || ncRNA metabolic process || RNA splicing || RNA processing || tRNA splicing, via endonucleolytic cleavage and ligation || gene expression || organic cyclic compound metabolic process || cellular macromolecule metabolic process || nucleobase-containing compound metabolic process || RNA metabolic process || nucleic acid metabolic process || ncRNA processing || tRNA processing |
| Biological Process (BP) |
primary metabolic process |
0.01816 |
0.2976 |
-- |
INHERITED FROM: tRNA metabolic process || RNA splicing, via endonucleolytic cleavage and ligation || ncRNA metabolic process || nucleobase-containing compound metabolic process || RNA metabolic process || RNA splicing || nucleic acid metabolic process || RNA processing || ncRNA processing || tRNA processing || tRNA splicing, via endonucleolytic cleavage and ligation |
| Biological Process (BP) |
biological_process |
0.01136 |
0 |
-- |
INHERITED FROM: RNA splicing, via endonucleolytic cleavage and ligation || gene expression || nucleobase-containing compound metabolic process || RNA metabolic process || ncRNA processing || tRNA metabolic process || RNA splicing || RNA processing || tRNA splicing, via endonucleolytic cleavage and ligation || organic cyclic compound metabolic process || cellular macromolecule metabolic process || cellular nitrogen compound metabolic process || nucleic acid metabolic process || tRNA processing || nitrogen compound metabolic process || ncRNA metabolic process || heterocycle metabolic process || cellular aromatic compound metabolic process |
| Biological Process (BP) |
cellular process |
0.8175 |
0.1415 |
-- |
INHERITED FROM: RNA splicing, via endonucleolytic cleavage and ligation || nucleobase-containing compound metabolic process || RNA metabolic process || ncRNA processing || tRNA metabolic process || ncRNA metabolic process || RNA splicing || RNA processing || heterocycle metabolic process || tRNA splicing, via endonucleolytic cleavage and ligation || cellular macromolecule metabolic process || cellular nitrogen compound metabolic process || cellular aromatic compound metabolic process || nucleic acid metabolic process || tRNA processing |
| Biological Process (BP) |
heterocycle metabolic process |
1.262e-05 |
0.6308 |
Least Informative |
DIRECT |
| Biological Process (BP) |
cellular aromatic compound metabolic process |
1.624e-05 |
0.6271 |
Least Informative |
DIRECT |
| Biological Process (BP) |
organic cyclic compound metabolic process |
3.269e-05 |
0.5817 |
Least Informative |
DIRECT |
| Biological Process (BP) |
cellular macromolecule metabolic process |
0.00063 |
0.4976 |
Least Informative |
DIRECT |
| Biological Process (BP) |
nitrogen compound metabolic process |
8.863e-05 |
0.5171 |
Least Informative |
DIRECT |
| Biological Process (BP) |
RNA metabolic process |
3.278e-09 |
1.086 |
Moderately Informative |
DIRECT |
| Biological Process (BP) |
gene expression |
1.088e-08 |
0.8729 |
Moderately Informative |
DIRECT |
| Biological Process (BP) |
tRNA metabolic process |
0 |
1.699 |
Informative |
DIRECT |
| Biological Process (BP) |
ncRNA processing |
0.0002175 |
1.553 |
Informative |
DIRECT |
| Molecular Function (MF) |
ligase activity, forming phosphoric ester bonds |
0 |
2.679 |
-- |
DIRECT |
| Molecular Function (MF) |
RNA ligase activity |
0 |
2.679 |
-- |
DIRECT |
| Molecular Function (MF) |
ligase activity |
2.036e-13 |
1.356 |
-- |
DIRECT |
| Molecular Function (MF) |
molecular_function |
0.01846 |
0 |
-- |
INHERITED FROM: ligase activity || ligase activity, forming phosphoric ester bonds || RNA ligase activity |
| Molecular Function (MF) |
catalytic activity |
0.04606 |
0.2686 |
-- |
INHERITED FROM: ligase activity || ligase activity, forming phosphoric ester bonds || RNA ligase activity |
| Cellular Component (CC) |
tRNA-splicing ligase complex |
0 |
2.542 |
-- |
DIRECT |
| Cellular Component (CC) |
macromolecular complex |
0.01619 |
0.4276 |
-- |
INHERITED FROM: tRNA-splicing ligase complex |
| Cellular Component (CC) |
cellular_component |
0.08658 |
0 |
-- |
INHERITED FROM: tRNA-splicing ligase complex |
| Cellular Component (CC) |
intracellular part |
0.586 |
0.1266 |
-- |
INHERITED FROM: tRNA-splicing ligase complex |
| Cellular Component (CC) |
intracellular |
0.5969 |
0.1266 |
-- |
INHERITED FROM: tRNA-splicing ligase complex |
| Cellular Component (CC) |
cell part |
1 |
0.08068 |
-- |
INHERITED FROM: tRNA-splicing ligase complex |
| Cellular Component (CC) |
cell |
1 |
0.08068 |
-- |
INHERITED FROM: tRNA-splicing ligase complex |
| Cellular Component (CC) |
protein complex |
0.002127 |
0.5639 |
Least Informative |
INHERITED FROM: tRNA-splicing ligase complex |
Document: GO annotation of SCOP domains
Enzyme Commission (EC) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: EC annotation of SCOP domains
Enzyme Commission (EC) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: EC annotation of SCOP domains
UniProtKB KeyWords (KW) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: KW annotation of SCOP domains
InterPro annotation
| Cross references | IPR001233 SSF103365 Protein matches |
| Abstract | A number of uncharacterised proteins including Escherichia coli rtcB, Mycobacterium
tuberculosis MtCY441.01., Caenorhabditis elegans F16A11.2 and Methanococcus jannaschii
MJ0682 belong to this family. |
InterPro database
PDBeMotif information about ligands, sequence and structure motifs
PDBeMotif resource
Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]
Internal database links
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Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry
out SCOP domain assignments to all genomes at the superfamily level.
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Alignments of sequences to 1 models
in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical
are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.
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Browse and view proteins in genomes which have
different domain combinations including a Hypothetical protein PH1602 domain.
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Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.
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Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.
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There are 1 hidden Markov models representing the Hypothetical protein PH1602 superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.
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Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]
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