SUPERFAMILY 1.75 HMM library and genome assignments server


Hypothetical protein PH1602 superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Hypothetical protein PH1602 [ 103364]
Superfamily:   Hypothetical protein PH1602 [ 103365]
Families:   Hypothetical protein PH1602 [ 103366]


Superfamily statistics
Genomes (1,166) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 1,563 4,361 1
Proteins 1,512 4,301 1


Functional annotation
General category Other
Detailed category Unknown function

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)cellular aromatic compound metabolic process4.255e-067.214e-06Least InformativeDirect
Biological Process (BP)nitrogen compound metabolic process4.227e-053.943e-05Least InformativeDirect
Biological Process (BP)cellular macromolecule metabolic process1.569e-050.0001821Least InformativeDirect
Biological Process (BP)heterocycle metabolic process3.936e-066.021e-06Least InformativeDirect
Biological Process (BP)organic cyclic compound metabolic process1.07e-051.501e-05Least InformativeDirect
Biological Process (BP)gene expression2.843e-103.064e-09Moderately InformativeDirect
Biological Process (BP)RNA metabolic process3.1e-111.217e-09Moderately InformativeDirect
Biological Process (BP)RNA processing9.044e-146.869e-13InformativeDirect
Biological Process (BP)ncRNA metabolic process0.00017491.286e-05InformativeDirect
Biological Process (BP)RNA splicing0.00033330.0002238Highly InformativeDirect
Cellular Component (CC)protein complex6.056e-050.001132Least InformativeInherited

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular aromatic compound metabolic process 7.214e-06 Least Informative Direct
Biological Process (BP) nitrogen compound metabolic process 3.943e-05 Least Informative Direct
Biological Process (BP) cellular macromolecule metabolic process 0.0001821 Least Informative Direct
Biological Process (BP) heterocycle metabolic process 6.021e-06 Least Informative Direct
Biological Process (BP) organic cyclic compound metabolic process 1.501e-05 Least Informative Direct
Biological Process (BP) gene expression 3.064e-09 Moderately Informative Direct
Biological Process (BP) RNA metabolic process 1.217e-09 Moderately Informative Direct
Biological Process (BP) RNA processing 6.869e-13 Informative Direct
Biological Process (BP) ncRNA metabolic process 1.286e-05 Informative Direct
Biological Process (BP) RNA splicing 0.0002238 Highly Informative Direct
Cellular Component (CC) protein complex 0.001132 Least Informative Inherited

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Ligases0Least InformativeDirect
Enzyme Commission (EC)Ligases that form phosphoric-ester bonds1InformativeInherited

Document: EC annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Ligases0Moderately InformativeDirect
Enzyme Commission (EC)Ligases that form phosphoric-ester bonds1Highly InformativeInherited

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processtRNA processing0InformativeDirect
Biological processIntron homing5.093e-14Highly InformativeDirect
Molecular functionMetal-binding0Least InformativeDirect
Molecular functionZinc0Least InformativeDirect
Molecular functionNucleotide-binding1.688e-07Least InformativeDirect
Post-translational modificationHydrolase1Least InformativeInherited
Post-translational modificationLigase0Moderately InformativeDirect
Post-translational modificationNuclease0.0008287Moderately InformativeDirect
Post-translational modificationEndonuclease0.000101InformativeDirect
Post-translational modificationAutocatalytic cleavage2.198e-07InformativeDirect
Post-translational modificationProtein splicing1.957e-14Highly InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR001233 SSF103365 Protein matches
Abstract A number of uncharacterised proteins including Escherichia coli rtcB, Mycobacterium tuberculosis MtCY441.01., Caenorhabditis elegans F16A11.2 and Methanococcus jannaschii MJ0682 belong to this family.

InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Hypothetical protein PH1602 domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Hypothetical protein PH1602 superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]