SUPERFAMILY 1.75 HMM library and genome assignments server

Supernatant protein factor (SPF), C-terminal domain superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   Supernatant protein factor (SPF), C-terminal domain [ 101575]
Superfamily:   Supernatant protein factor (SPF), C-terminal domain [ 101576]
Families:   Supernatant protein factor (SPF), C-terminal domain [ 101577]


Superfamily statistics
Genomes (478) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 2,964 3,320 2
Proteins 2,959 3,312 2


Functional annotation
General category General
Detailed category Ligand binding

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) localization 0.08294 Least Informative Inherited
Biological Process (BP) cellular component organization or biogenesis 0.8955 Least Informative Inherited
Biological Process (BP) cellular localization 0.0003636 Moderately Informative Direct
Biological Process (BP) regulation of multicellular organismal process 0.5874 Moderately Informative Inherited
Biological Process (BP) single-organism intracellular transport 0.0001122 Informative Direct
Biological Process (BP) vesicle-mediated transport 0.05539 Informative Inherited
Biological Process (BP) cytoplasmic transport 1 Informative Inherited
Biological Process (BP) regulation of reproductive process 0.00006598 Highly Informative Direct
Biological Process (BP) regulation of multi-organism process 0.0005069 Highly Informative Direct
Biological Process (BP) Golgi vesicle transport 0.001493 Highly Informative Inherited
Cellular Component (CC) cytoplasmic part 0.0000003078 Least Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 0.002986 Least Informative Inherited
Cellular Component (CC) intracellular organelle part 0.8798 Least Informative Inherited
Cellular Component (CC) membrane 0.1299 Least Informative Inherited
Cellular Component (CC) endoplasmic reticulum 0.0000000000005476 Moderately Informative Direct
Cellular Component (CC) vesicle 0.00008105 Moderately Informative Direct
Cellular Component (CC) bounding membrane of organelle 0.0001468 Moderately Informative Direct
Cellular Component (CC) Golgi apparatus 0.0000000003841 Informative Direct
Cellular Component (CC) coated vesicle 0.00000004747 Highly Informative Direct
Cellular Component (CC) Golgi-associated vesicle 0.0000009022 Highly Informative Direct
Cellular Component (CC) transport vesicle 0.0005124 Highly Informative Direct
Cellular Component (CC) cytoplasmic vesicle membrane 0.004143 Highly Informative Inherited

Document: GO annotation of SCOP domains

Worm Phenotype (WP)

(show details) Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details)
YP termFDR (all)SDYP levelAnnotation (direct or inherited)
Yeast Phenotype (YP)resistance to chemicals0Least InformativeDirect

Document: YP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)viscus0Least InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)guard cell0Least InformativeDirect
Plant structure DEvelopment stage (PDE)4 leaf senescence stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)F mature embryo stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)C globular stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)D bilateral stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.12 twelve leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.08 eight leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.02 two leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.10 ten leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.04 four leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.06 six leaves visible stage0Least InformativeDirect

Document: AP annotation of SCOP domains

DrugBank ATC (DB)

(show details)
DB termFDR (all)SDDB levelAnnotation (direct or inherited)
Drugbank ATC_code (DB)alimentary tract and metabolism0Least InformativeDirect
Drugbank ATC_code (DB)other plain vitamin preparations1Moderately InformativeInherited
Drugbank ATC_code (DB)tocopherol (vit e)0InformativeDirect

Document: DB annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport0Least InformativeDirect
Biological processProtein transport0.00000000000001944Moderately InformativeDirect
Biological processER-Golgi transport0.00000000008815Highly InformativeDirect
Cellular componentMembrane0.000000000000008204Least InformativeDirect
Cellular componentEndoplasmic reticulum0Moderately InformativeDirect
Cellular componentGolgi apparatus0Moderately InformativeDirect
Cellular componentCytoplasmic vesicle0Moderately InformativeDirect
DomainSignal0.000000000001938Least InformativeDirect
DomainTransmembrane0.000000003425Least InformativeDirect
DomainCoiled coil0.000000000001245Moderately InformativeDirect
Molecular functionLipid-binding0InformativeDirect
Post-translational modificationAcetylation0.0000453Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · DrugBank ATC (DB) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Supernatant protein factor (SPF), C-terminal domain domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Supernatant protein factor (SPF), C-terminal domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · DrugBank ATC (DB) · UniProtKB KeyWords (KW) · Internal database links ]