SUPERFAMILY 1.75 HMM library and genome assignments server


Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain [ 101488]
Superfamily:   Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain [ 101489]
Families:   Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain [ 101490]


Superfamily statistics
Genomes (195) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 252 0 1
Proteins 251 0 1


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details) Document: GO annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Internal database links ]