SUPERFAMILY 1.75 HMM library and genome assignments server

Zebrafish Anatomy (ZA): anatomical structure

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Root: ZA Hierarchy (zebrafish anatomy from ZFIN zebrafish anatomy ontology)

Shortest distance to current term (+ for parents, - for children) ZA term [ZA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ 1:   zebrafish anatomical entity [ZFA:0100000] <6>
0:   anatomical structure [ZFA:0000037] <11>(42|43) (42|14|7)
- 1:   portion of tissue [ZFA:0001477] <209>(9|14) (9|3|2)
- 1:   multi-tissue structure [ZFA:0001488] <175>(18|15) (18|7|4)
- 1:   cell [ZFA:0009000] <96>(14|11) (14|4|4)
- 1:   embryonic structure [ZFA:0001105] <49>(3|3) (3|0|0)
- 1:   acellular anatomical structure [ZFA:0000382] <14>(1|1) (1|0|0)
- 1:   compound organ [ZFA:0000496] <12>(23|20) (24|9|4)
- 1:   organism subdivision [ZFA:0001308] <10>(26|25) (26|10|5)
- 1:   whole organism [ZFA:0001094] <7>(42|43) (42|14|7)
- 1:   anatomical group [ZFA:0001512] <5>(36|38) (36|12|5)
- 1:   extraembryonic structure [ZFA:0000020] <1>(0|0) (0|0|0)
- 1:   neuraxis flexure [ZFA:0005593] <1>(0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
CoA-dependent acyltransferases1Inherited
Mitochondrial carrier1Inherited
Multidrug efflux transporter AcrB transmembrane domain1Inherited
F-box domain1Inherited
PDZ domain-like1Inherited
Cystine-knot cytokines1Inherited
GST C-terminal domain-like1Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases1Inherited
beta and beta-prime subunits of DNA dependent RNA-polymerase1Inherited
FAD-linked reductases, C-terminal domain1Inherited
Nucleotide-diphospho-sugar transferases1Inherited
Actin-like ATPase domain1Inherited
Heat shock protein 70kD (HSP70), peptide-binding domain1Inherited
Protein kinase-like (PK-like)1Inherited
Nucleotidylyl transferase1Inherited
GroEL-intermediate domain like1Inherited
Snake toxin-like1Inherited
Neurotransmitter-gated ion-channel transmembrane pore1Inherited
Eukaryotic type KH-domain (KH-domain type I)1Inherited
lambda repressor-like DNA-binding domains1Inherited
Ankyrin repeat1Inherited
FnI-like domain1Inherited
GroEL equatorial domain-like1Inherited
p53-like transcription factors1Inherited
SH2 domain1Inherited
Growth factor receptor domain1Inherited
HLH, helix-loop-helix DNA-binding domain1Inherited
Ubiquitin-like1Inherited
Connexin431Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)1Inherited
DNA/RNA polymerases1Inherited
Homeodomain-like1Inherited
HMG-box1Inherited
FAD/NAD(P)-binding domain1Inherited
Cytokine1Inherited
CalX-like1Inherited
GroEL apical domain-like1Inherited
CCCH zinc finger1Inherited
CAD & PB1 domains1Inherited
BRCT domain1Inherited
Nicotinic receptor ligand binding domain-like1Inherited
Retrovirus zinc finger-like domains1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Neurotransmitter-gated ion-channel transmembrane pore1Inherited
Nicotinic receptor ligand binding domain-like1Inherited
EGF-type module1Inherited
HMG-box1Inherited
Myosin rod fragments1Inherited
Forkhead DNA-binding domain1Inherited
CalX-beta domain1Inherited
Calmodulin-like1Inherited
HLH, helix-loop-helix DNA-binding domain1Inherited
PDZ domain1Inherited
T-box1Inherited
Protein kinases, catalytic subunit1Inherited
CAT-like1Inherited
Fibroblast growth factors (FGF)1Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain1Inherited
Erythroid transcription factor GATA-11Inherited
Eukaryotic type KH-domain (KH-domain type I)1Inherited
C-terminal, gelsolin-like domain of Sec23/241Inherited
Group II chaperonin (CCT, TRIC), ATPase domain1Inherited
Laminin-type module1Inherited
DNA polymerase I1Inherited
POU-specific domain1Inherited
Retrovirus zinc finger-like domains1Inherited
Homeodomain1Inherited
Group II chaperonin (CCT, TRIC), intermediate domain1Inherited
Mitochondrial carrier1Inherited
Tandem AAA-ATPase domain1Inherited
Transforming growth factor (TGF)-beta1Inherited
SH2 domain1Inherited
Heat shock protein 70kD (HSP70), peptide-binding domain1Inherited
Paired domain1Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases1Inherited
Multidrug efflux transporter AcrB transmembrane domain1Inherited
Group II chaperonin (CCT, TRIC), apical domain1Inherited
PLC-like (P variant)1Inherited
Classic zinc finger, C2H21Inherited
Connexin431Inherited
CCCH zinc finger1Inherited
Growth factor receptor domain1Inherited
VWC domain1Inherited
Actin/HSP701Inherited
PB1 domain1Inherited
Ankyrin repeat1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Cytokine1Inherited
GroEL equatorial domain-like1Inherited
Growth factor receptor domain1Inherited
GroEL apical domain-like1Inherited
BRCT domain1Inherited
Retrovirus zinc finger-like domains1Inherited
GST C-terminal domain-like1Inherited
Nucleotidylyl transferase1Inherited
Nicotinic receptor ligand binding domain-like1Inherited
Cystine-knot cytokines1Inherited
FnI-like domain1Inherited
Nucleotide-diphospho-sugar transferases1Inherited
lambda repressor-like DNA-binding domains1Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases1Inherited
CCCH zinc finger1Inherited
Actin-like ATPase domain1Inherited
CoA-dependent acyltransferases1Inherited
HMG-box1Inherited
beta and beta-prime subunits of DNA dependent RNA-polymerase1Inherited
Snake toxin-like1Inherited
Homeodomain-like1Inherited
Neurotransmitter-gated ion-channel transmembrane pore1Inherited
Heat shock protein 70kD (HSP70), peptide-binding domain1Inherited
CAD & PB1 domains1Inherited
Multidrug efflux transporter AcrB transmembrane domain1Inherited
F-box domain1Inherited
Protein kinase-like (PK-like)1Inherited
CalX-like1Inherited
p53-like transcription factors1Inherited
Connexin431Inherited
Ubiquitin-like1Inherited
DNA/RNA polymerases1Inherited
Eukaryotic type KH-domain (KH-domain type I)1Inherited
SH2 domain1Inherited
PDZ domain-like1Inherited
FAD/NAD(P)-binding domain1Inherited
Ankyrin repeat1Inherited
GroEL-intermediate domain like1Inherited
HLH, helix-loop-helix DNA-binding domain1Inherited
FAD-linked reductases, C-terminal domain1Inherited
Mitochondrial carrier1Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 1Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 1Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 1Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 1Inherited
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 1Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 1Inherited
    90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 1Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 1Inherited
    63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 1Inherited
    141072,141072
  • 141072 - CalX-like
  • 141072 - CalX-like
  • 1Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 1Inherited
    51905,54373
  • 51905 - FAD/NAD(P)-binding domain
  • 54373 - FAD-linked reductases, C-terminal domain
  • 1Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 1Inherited
    57196,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 1Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 1Inherited
    48726,49265,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 1Inherited
    57667,57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 1Inherited
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 1Inherited
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 1Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 1Inherited
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 1Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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