SUPERFAMILY 1.75 HMM library and genome assignments server

Xenopus ANatomical entity (XAN): anatomical line

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ 1:   Xenopus anatomical entity [XAO:0000000] <9>
0:   anatomical line [XAO:0004003] <2>(6|6) (6|1|0)
- 1:   midbrain-hindbrain boundary [XAO:0000016](6|5) (6|1|0)
- 1:   zona limitans intrathalamica [XAO:0004305](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0.000000000469Direct
Frizzled cysteine-rich domain0.000003272Direct
HMG-box0.000009034Direct
lambda repressor-like DNA-binding domains0.00002269Direct
HLH, helix-loop-helix DNA-binding domain0.000687Direct
Cytokine0.001079Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain0.0000000001881Direct
Frizzled cysteine-rich domain0.000003601Direct
HMG-box0.00001111Direct
POU-specific domain0.00008674Direct
HLH, helix-loop-helix DNA-binding domain0.0008173Direct
Fibroblast growth factors (FGF)0.001053Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0.0000000003716Direct
Frizzled cysteine-rich domain0.000002619Direct
HMG-box0.000007252Direct
lambda repressor-like DNA-binding domains0.00001827Direct
HLH, helix-loop-helix DNA-binding domain0.0005631Direct
Cytokine0.0008872Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.0000722Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)