SUPERFAMILY 1.75 HMM library and genome assignments server

Xenopus ANatomical entity (XAN): anatomical direction

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ 1:   Xenopus anatomical entity [XAO:0000000] <9>
0:   anatomical direction [XAO:0003185] <14>(11|14) (13|6|0)
- 1:   animal [XAO:0000297](0|0) (0|0|0)
- 1:   anterior [XAO:0003056](0|1) (0|0|0)
- 1:   deep [XAO:0000301](0|0) (0|0|0)
- 1:   distal [XAO:0003189](0|0) (0|0|0)
- 1:   dorsal [XAO:0000298](0|0) (0|1|0)
- 1:   dorso-lateral [XAO:0000302](0|0) (0|0|0)
- 1:   lateral [XAO:0000304](1|1) (1|0|0)
- 1:   medial [XAO:0003187](0|0) (0|0|0)
- 1:   posterior [XAO:0003057](0|0) (0|0|0)
- 1:   proximal [XAO:0003188](0|0) (0|0|0)
- 1:   superficial [XAO:0000300](0|0) (0|0|0)
- 1:   vegetal [XAO:0000296](0|0) (0|0|0)
- 1:   ventral [XAO:0000299](1|2) (1|0|0)
- 1:   ventro-lateral [XAO:0000303](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0Direct
"Winged helix" DNA-binding domain0.00000001378Direct
Frizzled cysteine-rich domain0.00000004746Direct
Cystine-knot cytokines0.0000002515Direct
p53-like transcription factors0.0000232Direct
Cytokine0.0001141Direct
Glucocorticoid receptor-like (DNA-binding domain)0.0002471Direct
TIMP-like0.0007508Direct
Snake toxin-like0.0009105Direct
SMAD MH1 domain0.001644Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
HLH, helix-loop-helix DNA-binding domain0Direct
Erythroid transcription factor GATA-10Direct
Homeodomain0Direct
Forkhead DNA-binding domain0.00000000000007507Direct
Transforming growth factor (TGF)-beta0.000000008085Direct
Frizzled cysteine-rich domain0.00000007283Direct
T-box0.0000007318Direct
Paired domain0.00001082Direct
Cell cycle control phosphatase, catalytic domain0.00001082Direct
Extracellular domain of cell surface receptors0.0001328Direct
Fibroblast growth factors (FGF)0.0001389Direct
ets domain0.0008545Direct
SMAD MH1 domain0.001667Inherited
SMAD domain0.003563Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0Direct
"Winged helix" DNA-binding domain0.00000001094Direct
Frizzled cysteine-rich domain0.0000000377Direct
Cystine-knot cytokines0.0000002004Direct
p53-like transcription factors0.00001868Direct
Cytokine0.00009243Direct
Glucocorticoid receptor-like (DNA-binding domain)0.0002011Direct
TIMP-like0.000616Direct
Snake toxin-like0.0007484Direct
HMG-box0.0008996Direct
Alkaline phosphatase-like0.0009997Direct
SMAD MH1 domain0.001359Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
49785,49785
  • 49785 - Galactose-binding domain-like
  • 49785 - Galactose-binding domain-like
  • 0.00009414Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0001763Direct
    57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.0004925Direct
    63501,50242
  • 63501 - Frizzled cysteine-rich domain
  • 50242 - TIMP-like
  • 0.0004925Direct
    49854,49854
  • 49854 - Spermadhesin, CUB domain
  • 49854 - Spermadhesin, CUB domain
  • 0.0007484Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.0007666Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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