SUPERFAMILY 1.75 HMM library and genome assignments server

Xenopus ANatomical entity (XAN): anatomical entity in vitro

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ 1:   Xenopus anatomical entity [XAO:0000000] <9>
0:   anatomical entity in vitro [XAO:0003007] <4>(22|34) (23|14|3)
- 1:   Keller explant [XAO:0003053](0|0) (0|0|0)
- 1:   activin-induced ectoderm [XAO:0003008](0|0) (0|0|0)
- 1:   cell-free extract [XAO:0004291](0|0) (0|0|0)
- 1:   disaggregated/reaggregated ectoderm treated with activin [XAO:0003009](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Tim10-like0Direct
TK C-terminal domain-like0Direct
LuxS/MPP-like metallohydrolase0Direct
PLP-binding barrel0Direct
Nop domain0Direct
Sec63 N-terminal domain-like0Direct
Subunits of heterodimeric actin filament capping protein Capz0Direct
Alanine racemase C-terminal domain-like0Direct
Mib/herc2 domain-like0Direct
Myosin phosphatase inhibitor 17kDa protein, CPI-170Direct
Ferritin-like0Direct
KA1-like0Direct
Surp module (SWAP domain)0Direct
beta-sandwich domain of Sec23/240Direct
4Fe-4S ferredoxins0Direct
Ribosomal proteins S24e, L23 and L15e0Direct
Ribosomal proteins L15p and L18e0Direct
GroEL equatorial domain-like0Direct
RNA-binding domain, RBD0.00000000000000373Direct
Eukaryotic type KH-domain (KH-domain type I)0.0001133Direct
Sm-like ribonucleoproteins0.0004679Direct
Cyclophilin-like0.0005331Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0Direct
Surp module (SWAP domain)0Direct
B56-like0Direct
Kinase associated domain 1, KA10Direct
Mib/herc2 domain0Direct
A20-like zinc finger0Direct
Alanine racemase-like, N-terminal domain0Direct
Tim10/DDP0Direct
Interferon regulatory factor 3 (IRF3), transactivation domain0Direct
Ribosomal proteins L15p and L18e0Direct
ZZ domain0Direct
U-box0Direct
RuBisCo LSMT catalytic domain0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
S-adenosylhomocystein hydrolase0Direct
MPP-like0Direct
Myosin phosphatase inhibitor 17kDa protein, CPI-170Direct
Eukaryotic ODC-like0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Adenain-like0Direct
SWIRM domain0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0Direct
Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain0Direct
Branched-chain alpha-keto acid dehydrogenase PP module0Direct
Ran-binding domain0Direct
Nop domain0Direct
Canonical RBD0.0000000000001451Direct
Eukaryotic type KH-domain (KH-domain type I)0.00007818Direct
Cold shock DNA-binding domain-like0.00008327Direct
Tandem AAA-ATPase domain0.0001838Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0002878Direct
UBC-related0.0003588Direct
Cyclophilin (peptidylprolyl isomerase)0.0003819Direct
TBP-associated factors, TAFs0.0008562Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Subunits of heterodimeric actin filament capping protein Capz0Direct
Myosin phosphatase inhibitor 17kDa protein, CPI-170Direct
TK C-terminal domain-like0Direct
Ribosomal proteins L15p and L18e0Direct
GroEL equatorial domain-like0Direct
Surp module (SWAP domain)0Direct
Alanine racemase C-terminal domain-like0Direct
PLP-binding barrel0Direct
4Fe-4S ferredoxins0Direct
Nop domain0Direct
KA1-like0Direct
Ribosomal proteins S24e, L23 and L15e0Direct
LuxS/MPP-like metallohydrolase0Direct
Ferritin-like0Direct
beta-sandwich domain of Sec23/240Direct
Mib/herc2 domain-like0Direct
Sec63 N-terminal domain-like0Direct
Tim10-like0Direct
RNA-binding domain, RBD0.00000000000000295Direct
Eukaryotic type KH-domain (KH-domain type I)0.00009181Direct
Sm-like ribonucleoproteins0.0003822Direct
Cyclophilin-like0.0004361Direct
Translation proteins SH3-like domain0.0009723Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52518,52922
  • 52518 - Thiamin diphosphate-binding fold (THDP-binding)
  • 52922 - TK C-terminal domain-like
  • 0Direct
    57756,57756
  • 57756 - Retrovirus zinc finger-like domains
  • 57756 - Retrovirus zinc finger-like domains
  • 0Direct
    64356,49447
  • 64356 - SNARE-like
  • 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
  • 0Direct
    51419,50621
  • 51419 - PLP-binding barrel
  • 50621 - Alanine racemase C-terminal domain-like
  • 0Direct
    54534,54534
  • 54534 - FKBP-like
  • 54534 - FKBP-like
  • 0Direct
    52540,46785
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    54791,54791
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 0Direct
    52518,52518
  • 52518 - Thiamin diphosphate-binding fold (THDP-binding)
  • 52518 - Thiamin diphosphate-binding fold (THDP-binding)
  • 0Direct
    49899,52540
  • 49899 - Concanavalin A-like lectins/glucanases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    63411,63411
  • 63411 - LuxS/MPP-like metallohydrolase
  • 63411 - LuxS/MPP-like metallohydrolase
  • 0Direct
    52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0Direct
    103657,50044
  • 103657 - BAR/IMD domain-like
  • 50044 - SH3-domain
  • 0Direct
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.000002585Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0Direct
    54791,54791,54791
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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