SUPERFAMILY 1.75 HMM library and genome assignments server

Worm Phenotype (WP): pigmentation variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ 1:   Variant [WBPhenotype:0000886] <5>
0:   pigmentation variant [WBPhenotype:0000521] <4>(13|4) (13|3|1)
- 1:   organism pigmentation variant [WBPhenotype:0000527] <5>(12|4) (12|3|1)
- 1:   body region pigmentation variant [WBPhenotype:0000278] <2>(0|0) (0|0|0)
- 1:   organ system pigmentation variant [WBPhenotype:0000292] <1>(0|0) (0|0|0)
- 1:   cell pigmentation variant [WBPhenotype:0000526](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
GroEL-intermediate domain like0.0000002813Direct
GroEL equatorial domain-like0.0000002813Direct
GroEL apical domain-like0.0000006756Direct
PreATP-grasp domain0.0001002Direct
ARM repeat0.0001238Direct
Cyclin-like0.0004092Direct
Sm-like ribonucleoproteins0.0005688Direct
Glutathione synthetase ATP-binding domain-like0.0009543Direct
Translation proteins SH3-like domain0.001134Inherited
SNARE-like0.001572Inherited
ClpP/crotonase0.004483Inherited
"Winged helix" DNA-binding domain0.007602Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.1618Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Group II chaperonin (CCT, TRIC), ATPase domain0.0000001634Direct
Group II chaperonin (CCT, TRIC), apical domain0.00000047Direct
Cyclin0.00004996Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0001515Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GroEL-intermediate domain like0.0000002287Direct
GroEL equatorial domain-like0.0000002287Direct
GroEL apical domain-like0.000000551Direct
PreATP-grasp domain0.00008277Direct
ARM repeat0.0001023Direct
Cyclin-like0.0003408Direct
Sm-like ribonucleoproteins0.0004751Direct
Glutathione synthetase ATP-binding domain-like0.0008008Direct
Translation proteins SH3-like domain0.000954Direct
SNARE-like0.001326Inherited
ClpP/crotonase0.003813Inherited
"Winged helix" DNA-binding domain0.006514Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.1479Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000002287Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0000002287Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.000004036Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000002287Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)