SUPERFAMILY 1.75 HMM library and genome assignments server

Mammalian Phenotype (MP): normal phenotype

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Root: MP Hierarchy (mammalian/mouse phenotype from MGI_4.41)

Shortest distance to current term (+ for parents, - for children) MP term [MP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ 1:   mammalian phenotype [MP:0000001] <30>
0:   normal phenotype [MP:0002873] <2>(5|7) (6|4|4)
- 1:   phenotypic reversion [MP:0003171] <3>(0|0) (0|0|0)
- 1:   no abnormal phenotype detected [MP:0002169](4|6) (5|4|4)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Cytidine deaminase-like0Direct
HLH, helix-loop-helix DNA-binding domain0.0002741Direct
Protein kinase-like (PK-like)0.0003521Direct
p53-like transcription factors0.0003817Direct
Inhibitor of apoptosis (IAP) repeat0.0008537Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Retinoblastoma tumor suppressor domains0Direct
GRAM domain0Direct
ENTH domain0Direct
HLH, helix-loop-helix DNA-binding domain0.000337Direct
Inhibitor of apoptosis (IAP) repeat0.0006208Direct
Protein kinases, catalytic subunit0.0007528Direct
Paired domain0.0009834Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Cytidine deaminase-like0Direct
HLH, helix-loop-helix DNA-binding domain0.0001502Direct
Protein kinase-like (PK-like)0.0001944Direct
p53-like transcription factors0.0002108Direct
Inhibitor of apoptosis (IAP) repeat0.000486Direct
Glucocorticoid receptor-like (DNA-binding domain)0.0008336Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57196,90193
  • 57196 - EGF/Laminin
  • 90193 - Notch domain
  • 0Direct
    90193,90193
  • 90193 - Notch domain
  • 90193 - Notch domain
  • 0Direct
    50729,52799
  • 50729 - PH domain-like
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 0Direct
    57196,57424
  • 57196 - EGF/Laminin
  • 57424 - LDL receptor-like module
  • 0Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57196,90193,90193
  • 57196 - EGF/Laminin
  • 90193 - Notch domain
  • 90193 - Notch domain
  • 0Direct
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    63825,57196,57424
  • 63825 - YWTD domain
  • 57196 - EGF/Laminin
  • 57424 - LDL receptor-like module
  • 0Direct
    57196,57424,57424
  • 57196 - EGF/Laminin
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)