SUPERFAMILY 1.75 HMM library and genome assignments server

Mammalian Phenotype (MP): pigmentation phenotype

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Root: MP Hierarchy (mammalian/mouse phenotype from MGI_4.41)

Shortest distance to current term (+ for parents, - for children) MP term [MP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ 1:   mammalian phenotype [MP:0000001] <30>
0:   pigmentation phenotype [MP:0001186] <12>(4|5) (5|2|3)
- 1:   abnormal coat/hair pigmentation [MP:0002075] <20>(2|3) (3|0|2)
- 1:   abnormal skin pigmentation [MP:0002095] <11>(0|0) (0|1|0)
- 1:   abnormal melanocyte morphology [MP:0002877] <10>(0|0) (0|0|0)
- 1:   hypopigmentation [MP:0005408] <5>(0|0) (0|0|0)
- 1:   abnormal extracutaneous pigmentation [MP:0009389] <4>(3|2) (3|1|1)
- 1:   hyperpigmentation [MP:0001188] <3>(0|0) (0|0|0)
- 1:   abnormal melanogenesis [MP:0005077] <1>(0|0) (0|0|0)
- 1:   abnormal melanocyte proliferation [MP:0010741](0|0) (0|0|0)
- 1:   abnormal melanosome transport [MP:0008834](0|0) (0|0|0)
- 1:   abnormal pigmentation pattern [MP:0011494](0|0) (0|0|0)
- 1:   abnormal scrotum pigmentation [MP:0009847](0|0) (0|0|0)
- 1:   lipofuscinosis [MP:0008842](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Di-copper centre-containing domain0Direct
Frizzled cysteine-rich domain0.00193Inherited
LDL receptor-like module0.006098Inherited
YWTD domain0.01462Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Paired domain0.0003214Direct
Frizzled cysteine-rich domain0.001235Inherited
LDL receptor-like module0.004106Inherited
YWTD domain0.01026Inherited
HLH, helix-loop-helix DNA-binding domain0.08531Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Di-copper centre-containing domain0Direct
Frizzled cysteine-rich domain0.001136Inherited
LDL receptor-like module0.003809Inherited
YWTD domain0.009618Inherited
HLH, helix-loop-helix DNA-binding domain0.07991Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.001785Inherited
    64593,64593
  • 64593 - Intermediate filament protein, coiled coil region
  • 64593 - Intermediate filament protein, coiled coil region
  • 0.00523Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.001249Inherited
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.001785Inherited
    57184,57196,57196
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.009618Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)