SUPERFAMILY 1.75 HMM library and genome assignments server

Phenotypic Abnormality (PA): Growth abnormality

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Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ 1:   Phenotypic abnormality [HP:0000118] <21>
0:   Growth abnormality [HP:0001507] <5>(11|17) (13|9|8)
- 1:   Asymmetric growth [HP:0100555] <4>(0|1) (0|0|0)
- 1:   Growth delay [HP:0001510] <4>(3|5) (3|2|0)
- 1:   Abnormality of body height [HP:0000002] <3>(2|6) (2|5|6)
- 1:   Abnormality of body weight [HP:0004323] <3>(3|6) (4|5|1)
- 1:   Overgrowth [HP:0001548] <1>(0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Plakin repeat0Direct
L-aspartase-like0Direct
Glycerol-3-phosphate (1)-acyltransferase0Direct
BRK domain-like0Direct
RuvA domain 2-like0Direct
Arginase/deacetylase0Direct
Doublecortin (DC)0Direct
BRCT domain0Direct
HD-domain/PDEase-like0.05833Inherited
GAF domain-like0.07592Inherited
vWA-like0.7279Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
L-aspartase/fumarase0Direct
BRK domain-like0Direct
Doublecortin (DC)0Direct
Ferredoxin domains from multidomain proteins0Direct
Inositol polyphosphate 5-phosphatase (IPP5)0Direct
Plakin repeat0Direct
XPF/Rad1/Mus81 nuclease0Direct
Tetratricopeptide repeat (TPR)0.0001025Direct
Tandem AAA-ATPase domain0.0005884Direct
PDEase0.01399Inherited
Histone lysine methyltransferases0.01399Inherited
VWC domain0.01399Inherited
GAF domain0.059Inherited
Growth factor receptor domain0.3049Inherited
WD40-repeat0.3191Inherited
Integrin A (or I) domain0.6166Inherited
Pleckstrin-homology domain (PH domain)0.9458Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
BRCT domain0Direct
Plakin repeat0Direct
RuvA domain 2-like0Direct
L-aspartase-like0Direct
BRK domain-like0Direct
Doublecortin (DC)0Direct
Arginase/deacetylase0Direct
Glycerol-3-phosphate (1)-acyltransferase0Direct
TPR-like0.0008407Direct
HD-domain/PDEase-like0.04567Inherited
GAF domain-like0.06058Inherited
GroEL equatorial domain-like0.1469Inherited
vWA-like0.6957Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
89837,89837
  • 89837 - Doublecortin (DC)
  • 89837 - Doublecortin (DC)
  • 0Direct
    63825,57196
  • 63825 - YWTD domain
  • 57196 - EGF/Laminin
  • 0Direct
    75399,75399
  • 75399 - Plakin repeat
  • 75399 - Plakin repeat
  • 0Direct
    57581,57184
  • 57581 - TB module/8-cys domain
  • 57184 - Growth factor receptor domain
  • 0Direct
    52980,47781
  • 52980 - Restriction endonuclease-like
  • 47781 - RuvA domain 2-like
  • 0Direct
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.001331Inherited
    55781,109604
  • 55781 - GAF domain-like
  • 109604 - HD-domain/PDEase-like
  • 0.06058Inherited
    55781,55781
  • 55781 - GAF domain-like
  • 55781 - GAF domain-like
  • 0.06058Inherited
    53300,53300
  • 53300 - vWA-like
  • 53300 - vWA-like
  • 0.1469Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57581,57184,57581
  • 57581 - TB module/8-cys domain
  • 57184 - Growth factor receptor domain
  • 57581 - TB module/8-cys domain
  • 0Direct
    57184,57581,57184
  • 57184 - Growth factor receptor domain
  • 57581 - TB module/8-cys domain
  • 57184 - Growth factor receptor domain
  • 0Direct
    57196,63825,57196
  • 57196 - EGF/Laminin
  • 63825 - YWTD domain
  • 57196 - EGF/Laminin
  • 0Direct
    57196,57196,57581
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57581 - TB module/8-cys domain
  • 0Direct
    48452,48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0Direct
    57196,57581,57184
  • 57196 - EGF/Laminin
  • 57581 - TB module/8-cys domain
  • 57184 - Growth factor receptor domain
  • 0Direct
    57196,57581,57196
  • 57196 - EGF/Laminin
  • 57581 - TB module/8-cys domain
  • 57196 - EGF/Laminin
  • 0Direct
    55781,55781,109604
  • 55781 - GAF domain-like
  • 55781 - GAF domain-like
  • 109604 - HD-domain/PDEase-like
  • 0.06058Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)