SUPERFAMILY 1.75 HMM library and genome assignments server

Phenotypic Abnormality (PA): Abnormality of the abdomen

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Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ 1:   Phenotypic abnormality [HP:0000118] <21>
0:   Abnormality of the abdomen [HP:0001438] <6>(34|35) (38|17|3)
- 1:   Abdominal symptom [HP:0011458] <10>(5|7) (7|3|0)
- 1:   Abnormality of the abdominal organs [HP:0002012] <8>(25|23) (27|14|3)
- 1:   Abnormality of the diaphragm [HP:0000775] <6>(0|0) (0|0|0)
- 1:   Abnormality of the abdominal wall [HP:0004298] <5>(4|5) (5|0|0)
- 1:   Abnormality of abdominal situs [HP:0011620] <1>(1|0) (1|0|0)
- 1:   Abnormality of the mesentery [HP:0100016] <1>(0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Integrin beta tail domain0Direct
SAND domain-like0Direct
Plakin repeat0Direct
Galactose mutarotase-like0Direct
Glycosyl hydrolase domain0Direct
Metallo-hydrolase/oxidoreductase0Direct
Aldolase0Direct
Arginase/deacetylase0Direct
BPTI-like0Direct
(Trans)glycosidases0.0009376Direct
Ribosomal protein S5 domain 2-like0.01203Inherited
Acyl-CoA dehydrogenase NM domain-like0.04004Inherited
Acyl-CoA dehydrogenase C-terminal domain-like0.04004Inherited
GroEL equatorial domain-like0.0662Inherited
CalX-like0.0662Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.08517Inherited
Nicotinic receptor ligand binding domain-like0.08517Inherited
FnI-like domain0.1003Inherited
PX domain0.1142Inherited
ABC transporter transmembrane region0.1223Inherited
WD40 repeat-like0.1263Inherited
CoA-dependent acyltransferases0.1611Inherited
Adenine nucleotide alpha hydrolases-like0.1611Inherited
DEATH domain0.2385Inherited
Globin-like0.2722Inherited
TNF receptor-like0.2858Inherited
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.3834Inherited
Kazal-type serine protease inhibitors0.3861Inherited
Snake toxin-like0.3866Inherited
alpha/beta-Hydrolases0.5064Inherited
SH3-domain0.6466Inherited
E set domains0.7498Inherited
FAD/NAD(P)-binding domain0.7799Inherited
PH domain-like0.9189Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Prefoldin0Direct
Class I aldolase0Direct
Small Kunitz-type inhibitors & BPTI-like toxins0Direct
alpha-Amylases, C-terminal beta-sheet domain0Direct
Choline/Carnitine O-acyltransferase0Direct
DNA gyrase/MutL, second domain0Direct
DNA gyrase/MutL, N-terminal domain0Direct
Inositol polyphosphate 5-phosphatase (IPP5)0Direct
Integrin beta EGF-like domains0Direct
beta-glycanases0Direct
Plakin repeat0Direct
Amylase, catalytic domain0Direct
Elongation factors0Direct
Integrin beta tail domain0Direct
Tetratricopeptide repeat (TPR)0.0005542Direct
Arylsulfatase0.008259Inherited
Histone lysine methyltransferases0.02877Inherited
Plexin repeat0.02877Inherited
VWC domain0.02877Inherited
Medium chain acyl-CoA dehydrogenase-like, C-terminal domain0.05044Inherited
Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains0.05044Inherited
CalX-beta domain0.05189Inherited
BC N-terminal domain-like0.05189Inherited
BC ATP-binding domain-like0.05189Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.06784Inherited
Nicotinic receptor ligand binding domain-like0.06784Inherited
PX domain0.09329Inherited
Laminin-type module0.121Inherited
Pyrin domain, PYD0.2155Inherited
Globins0.239Inherited
TNF receptor-like0.239Inherited
I set domains0.4406Inherited
Classic zinc finger, C2H20.5008Inherited
SH3-domain0.6196Inherited
EGF-type module0.7223Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Plakin repeat0Direct
Metallo-hydrolase/oxidoreductase0Direct
Integrin beta tail domain0Direct
Galactose mutarotase-like0Direct
Glycosyl hydrolase domain0Direct
SAND domain-like0Direct
Arginase/deacetylase0Direct
BPTI-like0Direct
Aldolase0Direct
(Trans)glycosidases0.0005145Direct
Ribosomal protein S5 domain 2-like0.008201Inherited
Plexin repeat0.02872Inherited
Acyl-CoA dehydrogenase NM domain-like0.03022Inherited
Acyl-CoA dehydrogenase C-terminal domain-like0.03022Inherited
CalX-like0.05232Inherited
GroEL equatorial domain-like0.05232Inherited
Nicotinic receptor ligand binding domain-like0.06843Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.06843Inherited
FnI-like domain0.08183Inherited
PX domain0.09382Inherited
ABC transporter transmembrane region0.101Inherited
WD40 repeat-like0.1046Inherited
CoA-dependent acyltransferases0.136Inherited
Adenine nucleotide alpha hydrolases-like0.136Inherited
DEATH domain0.2083Inherited
PreATP-grasp domain0.2401Inherited
Globin-like0.2401Inherited
TNF receptor-like0.2533Inherited
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.3486Inherited
Kazal-type serine protease inhibitors0.3513Inherited
Snake toxin-like0.3519Inherited
EGF/Laminin0.4319Inherited
alpha/beta-Hydrolases0.4711Inherited
SH3-domain0.6127Inherited
E set domains0.7177Inherited
Homeodomain-like0.7473Inherited
FAD/NAD(P)-binding domain0.7488Inherited
PH domain-like0.8943Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52777,52777
  • 52777 - CoA-dependent acyltransferases
  • 52777 - CoA-dependent acyltransferases
  • 0Direct
    55550,55550
  • 55550 - SH2 domain
  • 55550 - SH2 domain
  • 0Direct
    75399,75399
  • 75399 - Plakin repeat
  • 75399 - Plakin repeat
  • 0Direct
    50729,81837
  • 50729 - PH domain-like
  • 81837 - BEACH domain
  • 0Direct
    103473,100895
  • 103473 - MFS general substrate transporter
  • 100895 - Kazal-type serine protease inhibitors
  • 0Direct
    51445,51011
  • 51445 - (Trans)glycosidases
  • 51011 - Glycosyl hydrolase domain
  • 0Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0Direct
    55874,54211
  • 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
  • 54211 - Ribosomal protein S5 domain 2-like
  • 0Direct
    57196,69687
  • 57196 - EGF/Laminin
  • 69687 - Integrin beta tail domain
  • 0Direct
    56645,47203
  • 56645 - Acyl-CoA dehydrogenase NM domain-like
  • 47203 - Acyl-CoA dehydrogenase C-terminal domain-like
  • 0.03022Inherited
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.03022Inherited
    63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0.06843Inherited
    47986,47986
  • 47986 - DEATH domain
  • 47986 - DEATH domain
  • 0.09382Inherited
    90123,52540
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.101Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.1323Inherited
    52440,56059
  • 52440 - PreATP-grasp domain
  • 56059 - Glutathione synthetase ATP-binding domain-like
  • 0.136Inherited
    57586,57586
  • 57586 - TNF receptor-like
  • 57586 - TNF receptor-like
  • 0.16Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,57196,57184
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0Direct
    57196,57196,69687
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 69687 - Integrin beta tail domain
  • 0Direct
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.4863Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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