SUPERFAMILY 1.75 HMM library and genome assignments server

Phenotypic Abnormality (PA): Abnormality of prenatal development or birth

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ 1:   Phenotypic abnormality [HP:0000118] <21>
0:   Abnormality of prenatal development or birth [HP:0001197] <10>(3|5) (3|2|0)
- 1:   Fetal ultrasound soft marker [HP:0011425] <13>(0|0) (0|0|0)
- 1:   Prenatal maternal abnormality [HP:0002686] <10>(1|1) (1|0|0)
- 1:   Abnormal delivery [HP:0001787] <9>(0|0) (0|0|0)
- 1:   Abnormality of the amniotic fluid [HP:0001560] <4>(0|0) (0|0|0)
- 1:   Abnormalities of placenta and umbilical cord [HP:0001194] <3>(2|2) (2|1|0)
- 1:   Hydrops fetalis [HP:0001789] <2>(0|0) (0|0|0)
- 1:   Prenatal movement abnormality [HP:0001557] <2>(2|3) (2|2|0)
- 1:   Increased nuchal translucency [HP:0010880] <1>(0|0) (0|0|0)
- 1:   Premature birth [HP:0001622] <1>(0|0) (0|0|0)
- 1:   Fetal ascites [HP:0001791](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Neurotransmitter-gated ion-channel transmembrane pore0.001772Inherited
Nicotinic receptor ligand binding domain-like0.001772Inherited
Homeodomain-like0.2699Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
VWC domain0.00001185Direct
Neurotransmitter-gated ion-channel transmembrane pore0.001088Inherited
Nicotinic receptor ligand binding domain-like0.001088Inherited
Integrin A (or I) domain0.03887Inherited
Homeodomain0.2864Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Nicotinic receptor ligand binding domain-like0.001037Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.001037Inherited
Homeodomain-like0.238Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0.001037Inherited
    53300,53300
  • 53300 - vWA-like
  • 53300 - vWA-like
  • 0.002868Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)