SUPERFAMILY 1.75 HMM library and genome assignments server

Phenotypic Abnormality (PA): Abnormality of the ear

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Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ 1:   Phenotypic abnormality [HP:0000118] <21>
0:   Abnormality of the ear [HP:0000598] <6>(5|14) (7|5|3)
- 1:   Abnormality of the outer ear [HP:0000356] <10>(1|5) (2|1|2)
- 1:   Abnormality of the middle ear [HP:0000370] <4>(0|1) (0|0|0)
- 1:   Hearing abnormality [HP:0000364] <4>(2|5) (2|2|1)
- 1:   Aplasia/Hypoplasia of the ear [HP:0008771] <3>(0|0) (0|0|0)
- 1:   Abnormality of the inner ear [HP:0000359] <2>(2|2) (2|1|0)
- 1:   Neoplasm of the ear [HP:0012780] <1>(0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
RuvA domain 2-like0Direct
Smc hinge domain0Direct
(Trans)glycosidases0.004718Inherited
HLH, helix-loop-helix DNA-binding domain0.08885Inherited
Second domain of FERM0.1697Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Cytoplasmic domain of inward rectifier potassium channel0Direct
Smc hinge domain0Direct
ZZ domain0Direct
Erythroid transcription factor GATA-10Direct
RecA protein-like (ATPase-domain)0Direct
beta-glycanases0Direct
XPF/Rad1/Mus81 nuclease0Direct
Tetratricopeptide repeat (TPR)0.0004038Direct
Transforming growth factor (TGF)-beta0.0004038Direct
Histone lysine methyltransferases0.007107Inherited
VWC domain0.007107Inherited
I set domains0.0545Inherited
HLH, helix-loop-helix DNA-binding domain0.06042Inherited
Second domain of FERM0.3029Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
RuvA domain 2-like0Direct
Smc hinge domain0Direct
TPR-like0.000822Direct
(Trans)glycosidases0.00298Inherited
HLH, helix-loop-helix DNA-binding domain0.07162Inherited
GroEL equatorial domain-like0.1087Inherited
Second domain of FERM0.1438Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
141072,141072
  • 141072 - CalX-like
  • 141072 - CalX-like
  • 0Direct
    81324,81296
  • 81324 - Voltage-gated potassium channels
  • 81296 - E set domains
  • 0Direct
    52980,47781
  • 52980 - Restriction endonuclease-like
  • 47781 - RuvA domain 2-like
  • 0Direct
    47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.1044Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.2029Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,57196,57184
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0Direct
    141072,141072,141072
  • 141072 - CalX-like
  • 141072 - CalX-like
  • 141072 - CalX-like
  • 0Direct
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.3189Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)