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Phenotype Ontology
Like Gene Ontology (GO), phenotypy ontology classifies and organizes gene-mutant/null phenotypic information from the very general at the top to more specific terms in the directed acyclic graph (DAG) by viewing an individual term as a node and its relations to parental terms (allowing for multiple parents) as directed edges. To navigate this hierarchy, we display all parental phenotypic terms to the current phenotypic term of interest ordered by their shortest distances to the current term. Also, only direct children phenotypic terms of the current phenotypic term are listed. Phenotype ontologies we have incorporated are as follows:

• Disease Ontology (DO) Ontology (DO)
  DO semantically integrates disease and medical vocabularies through extensive cross mapping of DO terms to MeSH, ICD, NCI thesaurus, SNOMED and OMIM.
  
• Human Phenotype (HP) Ontology (HP)
  HP captures phenotypic abnormalities that are described in OMIM, along with the corresponding disease-causing genes. It includes three complementary biological concepts: Mode_of_Inheritance (MI), ONset_and_clinical_course (ON), and Phenotypic_Abnormality (PA).
  
• Mouse Phenotype (MP) Ontology (MP)
  MP describes phenotypes of the mouse after a specific gene is genetically disrupted. Using it, Mouse Genome Informatics (MGI) provides high-coverate gene-level phenotypes for the mouse.
  
• Worm Phenotype (WP) Ontology (WP)
  WP classifies and organizes phenotype descriptions for C. elegans and other nematodes. Using it, WormBase provides primary resource for phenotype annotations for C. elegans.
  
• Yeast Phenotype (YP) Ontology (YP)
  Based on YP which is the major contributor to the Ascomycete phenotype ontology, Saccharomyces Genome Database (SGD) provides single mutant phenotypes for every gene in the yeast genome.
  
• Fly Phenotype (FP) Ontology (FP)
  FP refers to FlyBase controlled vocabulary. Specifically, a structured controlled vocabulary is used for the annotation of alleles (for their mutagen etc) in FlyBase.
  
• Fly Anatomy (FA) Ontology (FA)
  FA is a structured controlled vocabulary of the anatomy of Drosophila melanogaster, used for the description of phenotypes and where a gene is expressed.
  
• Zebrafish Anatomy (ZA) Ontology (ZA)
  ZA displays anatomical terms of the zebrafish using standard anatomical nomenclature, together with affected genes.
  
• Xenopus Anatomy (XA) Ontology (XA)
  XA represents the lineage of tissues and the timing of development for frogs (Xenopus laevis and Xenopus tropicalis). It is used to annotate Xenopus gene expression patterns and mutant and morphant phenotypes.
  
• Arabidopsis Plant Ontology (AP) Ontology (AP)
  As a major contributor to Plant Ontology which describes plant anatomical and morphological structures (AN) and growth and developmental stages (DE), the Arabidopsis Information Resource (TAIR) provides arabidopsis plant ontology annotations for the model higher plant Arabidopsis thaliana.
  
• Enzyme Commission (EC) Ontology (EC)
  Each enzyme is allocated a four-digit EC number, the first three digits of which define the reaction catalysed and the fourth of which is a unique identifier (serial number). Each enzyme is also assigned a systematic name that uniquely defines the reaction catalysed.
  
• DrugBank ATC (DB) Ontology (DB)
  In the Anatomical Therapeutic Chemical (ATC) classification system, drugs are classified in groups at five different levels according to the organ or system (1st level, anatomical main group) on which they act and their therapeutic (2nd level, therapeutic subgroup), pharmacological (3rd level, pharmacological subgroup) and chemical properties (4th level, chemical subgroup; 5th level, chemical substance). Only drugs in DrugBank are considered.
  
• UniProtKB KeyWords (KW) Ontology (KW)
  Keywords in UniProtKB are controlled vocabulary, providing a summary of the entry content and are used to index UniProtKB/Swiss-Prot entries based on 10 categories (the category "Technical term" being excluded here). Each keyword is attributed manually to UniProtKB/Swiss-Prot entries and automatically to UniProtKB/TrEMBL entries (according to specific annotation rules).
  
• UniProtKB UniPathway (UP) Ontology (UP)
  UP is a fully manually curated resource for the representation and annotation of metabolic pathways, being used as controlled vocabulary for pathway annotation in UniProtKB.
  

Structural Domain Phenotype Ontology and its Annotations
Structural Classification of Proteins (SCOP) classifies evolutionary-related domains into Superfamily level and Family level. Using the phenotype ontologies above, we have generated the domain-centric phenotype annotations, and further identified those phenotype terms which are the most informative to annotate SCOP domains. Promisingly, domain-centric phenotypic annotations can serve as an alternative starting point to explore genotype-phenotype relationships. We provide several relevant files for the download, including the annotation and the corresponding ontology for each phenotype ontology.

• Structural Domain Disease Ontology (DO) Ontology (SDDO) and its Annotations:
  For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2DO.txt, and the corresponding ontology:SDDO.txt) and mysql tables (Domain2PO.sql.gz).
  
• Structural Domain Human Phenotype (HP) Ontology (SDHP) and its Annotations:
  For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2HP.txt, and the corresponding ontology:SDHP.txt) and mysql tables (Domain2PO.sql.gz).
  
• Structural Domain Mouse Phenotype (MP) Ontology (SDMP) and its Annotations:
  For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2MP.txt, and the corresponding ontology:SDMP.txt) and mysql tables (Domain2PO.sql.gz).
  
• Structural Domain Worm Phenotype (WP) Ontology (SDWP) and its Annotations:
  For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2WP.txt, and the corresponding ontology:SDWP.txt) and mysql tables (Domain2PO.sql.gz).
  
• Structural Domain Yeast Phenotype (YP) Ontology (SDYP) and its Annotations:
  For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2YP.txt, and the corresponding ontology:SDYP.txt) and mysql tables (Domain2PO.sql.gz).
  
• Structural Domain Fly Phenotype (FP) Ontology (SDFP) and its Annotations:
  For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2FP.txt, and the corresponding ontology:SDFP.txt) and mysql tables (Domain2PO.sql.gz).
  
• Structural Domain Fly Anatomy (FA) Ontology (SDFA) and its Annotations:
  For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2FA.txt, and the corresponding ontology:SDFA.txt) and mysql tables (Domain2PO.sql.gz).
  
• Structural Domain Zebrafish Anatomy (ZA) Ontology (SDZA) and its Annotations:
  For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2ZA.txt, and the corresponding ontology:SDZA.txt) and mysql tables (Domain2PO.sql.gz).
  
• Structural Domain Xenopus Anatomy (XA) Ontology (SDXA) and its Annotations:
  For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2XA.txt, and the corresponding ontology:SDXA.txt) and mysql tables (Domain2PO.sql.gz).
  
• Structural Domain Arabidopsis Plant Ontology (AP) Ontology (SDAP) and its Annotations:
  For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2AP.txt, and the corresponding ontology:SDAP.txt) and mysql tables (Domain2PO.sql.gz).
  
• Structural Domain Enzyme Commission (EC) Ontology (SDEC) and its Annotations:
  For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2EC.txt, and the corresponding ontology:SDEC.txt) and mysql tables (Domain2PO.sql.gz).
  
• Structural Domain DrugBank ATC (DB) Ontology (SDDB) and its Annotations:
  For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2DB.txt, and the corresponding ontology:SDDB.txt) and mysql tables (Domain2PO.sql.gz).
  
• Structural Domain UniProtKB KeyWords (KW) Ontology (SDKW) and its Annotations:
  For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2KW.txt, and the corresponding ontology:SDKW.txt) and mysql tables (Domain2PO.sql.gz).
  
• Structural Domain UniProtKB UniPathway (UP) Ontology (SDUP) and its Annotations:
  For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2UP.txt, and the corresponding ontology:SDUP.txt) and mysql tables (Domain2PO.sql.gz).
  

Supra-domain Phenotype Ontology and its Annotations
Although domain-centric annotations hold great promise in describing phenotypic nature of independent domains, most domains themselves may not just work alone. In multi-domain proteins, they may be combined together to form distinct domain architectures. The recombination of the existing domains is considered as one of major driving forces for phenotypic diversificaation. As an extension, we have also generated supra-domain phenotype ontology and its annotations. Compared to domain-centric phenotype ontology and annotations (SCOP domains at the Superfamily level and Family level), this version focuses on supra-domains and individual SCOP domains ONLY at the Superfamily level. Besides, in terms of individual superfamilies, their annotations from the domain-centric version may be different from those from supra-domains version. Depending on your focus, the former should be used for the consideration of both the Superfamily level and Family level, otherwise the latter should be used if you are interested in domain combinations. Also, we provide several relevant files for the download, including the annotation and the corresponding ontology for each phenotype ontology.

• Supra-domain Domain Disease Ontology (DO) Ontology (SPDO) and its Annotations:
  For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2DO.txt, and the corresponding ontology:SPDO.txt) and mysql tables (SP2PO.sql.gz).
  
• Supra-domain Domain Human Phenotype (HP) Ontology (SPHO) and its Annotations:
  For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2HP.txt, and the corresponding ontology:SPHO.txt) and mysql tables (SP2PO.sql.gz).
  
• Supra-domain Domain Mouse Phenotype (MP) Ontology (SPMP) and its Annotations:
  For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2MP.txt, and the corresponding ontology:SPMP.txt) and mysql tables (SP2PO.sql.gz).
  
• Supra-domain Domain Worm Phenotype (WP) Ontology (SPWP) and its Annotations:
  For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2WP.txt, and the corresponding ontology:SPWP.txt) and mysql tables (SP2PO.sql.gz).
  
• Supra-domain Domain Yeast Phenotype (YP) Ontology (SPYP) and its Annotations:
  For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2YP.txt, and the corresponding ontology:SPYP.txt) and mysql tables (SP2PO.sql.gz).
  
• Supra-domain Domain Fly Phenotype (FP) Ontology (SPFP) and its Annotations:
  For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2FP.txt, and the corresponding ontology:SPFP.txt) and mysql tables (SP2PO.sql.gz).
  
• Supra-domain Domain Fly Anatomy (FA) Ontology (SPFA) and its Annotations:
  For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2FA.txt, and the corresponding ontology:SPFA.txt) and mysql tables (SP2PO.sql.gz).
  
• Supra-domain Domain Zebrafish Anatomy (ZA) Ontology (SPZA) and its Annotations:
  For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2ZA.txt, and the corresponding ontology:SPZA.txt) and mysql tables (SP2PO.sql.gz).
  
• Supra-domain Domain Xenopus Anatomy (XA) Ontology (SPXA) and its Annotations:
  For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2XA.txt, and the corresponding ontology:SPXA.txt) and mysql tables (SP2PO.sql.gz).
  
• Supra-domain Domain Arabidopsis Plant Ontology (AP) Ontology (SPAP) and its Annotations:
  For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2AP.txt, and the corresponding ontology:SPAP.txt) and mysql tables (SP2PO.sql.gz).
  
• Supra-domain Domain Enzyme Commission (EC) Ontology (SPEC) and its Annotations:
  For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2EC.txt, and the corresponding ontology:SPEC.txt) and mysql tables (SP2PO.sql.gz).
  
• Supra-domain Domain DrugBank ATC (DB) Ontology (SPDB) and its Annotations:
  For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2DB.txt, and the corresponding ontology:SPDB.txt) and mysql tables (SP2PO.sql.gz).
  
• Supra-domain Domain UniProtKB KeyWords (KW) Ontology (SPKW) and its Annotations:
  For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2KW.txt, and the corresponding ontology:SPKW.txt) and mysql tables (SP2PO.sql.gz).
  
• Supra-domain Domain UniProtKB UniPathway (UP) Ontology (SPUP) and its Annotations:
  For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2UP.txt, and the corresponding ontology:SPUP.txt) and mysql tables (SP2PO.sql.gz).
  

Superfamily domains annotated to this AP term (Not in SDAP)
Highlighted in gray are those with FDR_all>0.001

SCOP term	FDR (all)	Annotation (direct or inherited)
Tim10-like	0	DIRECT
alpha-D-mannose-specific plant lectins	0	DIRECT
RibA-like	0	DIRECT
NSFL1 (p97 ATPase) cofactor p47, SEP domain	0	DIRECT
BSD domain-like	0	DIRECT
SMR domain-like	0	DIRECT
Lipoxigenase	0	DIRECT
RNase III domain-like	0	DIRECT
Rudiment single hybrid motif	0	DIRECT
Phosphoglucomutase, first 3 domains	0	DIRECT
CHY zinc finger-like	0	DIRECT
SH3-domain	0	DIRECT
Phosphoglucomutase, C-terminal domain	0	DIRECT
S-adenosylmethionine decarboxylase	0	DIRECT
Globin-like	0	DIRECT
PHL pollen allergen	0	DIRECT
TATA-box binding protein-like	0	DIRECT
Domain of the SRP/SRP receptor G-proteins	0	DIRECT
The spindle assembly checkpoint protein mad2	0	DIRECT
Starch-binding domain-like	0	DIRECT
Prokaryotic type KH domain (KH-domain type II)	0	DIRECT
cAMP-binding domain-like	0	DIRECT
beta and beta-prime subunits of DNA dependent RNA-polymerase	0	DIRECT
EF-G C-terminal domain-like	0	DIRECT
Helical domain of Sec23/24	0	DIRECT
Transducin (alpha subunit), insertion domain	0	DIRECT
YrdC/RibB	0	DIRECT
EGF/Laminin	0	DIRECT
CO dehydrogenase flavoprotein C-terminal domain-like	0	DIRECT
LuxS/MPP-like metallohydrolase	0	DIRECT
Oxysterol-binding protein-like	0	DIRECT
ATP-dependent DNA ligase DNA-binding domain	0	DIRECT
Acyl-CoA dehydrogenase NM domain-like	0	DIRECT
NHL repeat	0	DIRECT
Prokaryotic type I DNA topoisomerase	0	DIRECT
RCC1/BLIP-II	0	DIRECT
Beta-D-glucan exohydrolase, C-terminal domain	0	DIRECT
Chelatase	0	DIRECT
Glycerol-3-phosphate (1)-acyltransferase	0	DIRECT
CO dehydrogenase molybdoprotein N-domain-like	0	DIRECT
Lipase/lipooxygenase domain (PLAT/LH2 domain)	0	DIRECT
CBS-domain pair	0	DIRECT
Expressed protein At2g23090/F21P24.15	0	DIRECT
Heme-dependent catalase-like	0	DIRECT
Ligand-binding domain in the NO signalling and Golgi transport	0	DIRECT
SAP domain	0	DIRECT
Prefoldin	0	DIRECT
Mog1p/PsbP-like	0	DIRECT
FabD/lysophospholipase-like	0	DIRECT
Composite domain of metallo-dependent hydrolases	0	DIRECT
NAP-like	0	DIRECT
GlnB-like	0	DIRECT
Bromodomain	0	DIRECT
UDP-glucose/GDP-mannose dehydrogenase C-terminal domain	0	DIRECT
Hypothetical protein YjiA, C-terminal domain	0	DIRECT
PLP-binding barrel	0	DIRECT
Tetrahydrobiopterin biosynthesis enzymes-like	0	DIRECT
AlbA-like	0	DIRECT
HesB-like domain	0	DIRECT
Barwin-like endoglucanases	0	DIRECT
Chalcone isomerase	0	DIRECT
DNA ligase/mRNA capping enzyme, catalytic domain	0	DIRECT
S15/NS1 RNA-binding domain	0	DIRECT
ADP-ribosylation	0	DIRECT
CRAL/TRIO domain	0	DIRECT
Subdomain of clathrin and coatomer appendage domain	0	DIRECT
ARID-like	0	DIRECT
TAZ domain	0	DIRECT
Protease propeptides/inhibitors	0	DIRECT
Lipocalins	0	DIRECT
Glucocorticoid receptor-like (DNA-binding domain)	0	DIRECT
DNA-binding domain of EIN3-like	0	DIRECT
HD-domain/PDEase-like	0	DIRECT
ValRS/IleRS/LeuRS editing domain	0	DIRECT
Creatinase/prolidase N-terminal domain	0	DIRECT
HRDC-like	0	DIRECT
Chaperone J-domain	0	DIRECT
Ribosomal protein L22	0	DIRECT
FKBP-like	0	DIRECT
GYF domain	0	DIRECT
S-adenosylmethionine synthetase	0	DIRECT
DHS-like NAD/FAD-binding domain	0	DIRECT
Inorganic pyrophosphatase	0	DIRECT
N-terminal, heterodimerisation domain of RBP7 (RpoE)	0	DIRECT
Zn-binding ribosomal proteins	0	DIRECT
vWA-like	0	DIRECT
PABC (PABP) domain	0	DIRECT
14-3-3 protein	0	DIRECT
Hect, E3 ligase catalytic domain	0	DIRECT
Magnesium transport protein CorA, transmembrane region	0	DIRECT
DNA repair protein MutS, domain I	0	DIRECT
Tubulin nucleotide-binding domain-like	0	DIRECT
Sec1/munc18-like (SM) proteins	0	DIRECT
Preprotein translocase SecY subunit	0	DIRECT
Formyltransferase	0	DIRECT
STI-like	0	DIRECT
DNA-glycosylase	0	DIRECT
Granulin repeat	0	DIRECT
JAB1/MPN domain	0	DIRECT
HIT/MYND zinc finger-like	0	DIRECT
Folate-binding domain	0	DIRECT
PapD-like	0	DIRECT
Ribosomal protein L10-like	0	DIRECT
beta-N-acetylhexosaminidase-like domain	0	DIRECT
LanC-like	0	DIRECT
XPC-binding domain	0	DIRECT
Tudor/PWWP/MBT	0	DIRECT
Crambin-like	0	DIRECT
Ribosomal protein S6	0	DIRECT
Heme oxygenase-like	0	DIRECT
Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	0	DIRECT
Elongation factor TFIIS domain 2	0	DIRECT
Sec7 domain	0	DIRECT
RPB5-like RNA polymerase subunit	0	DIRECT
Ribosomal protein L25-like	0	DIRECT
Peptidyl-tRNA hydrolase-like	0	DIRECT
Sigma2 domain of RNA polymerase sigma factors	0	DIRECT
Ribosomal protein L4	0	DIRECT
Bacterial exopeptidase dimerisation domain	0	DIRECT
PDZ domain-like	0	DIRECT
Nucleoside diphosphate kinase, NDK	0	DIRECT
Ribonuclease Rh-like	0	DIRECT
Translation initiation factor 2 beta, aIF2beta, N-terminal domain	0	DIRECT
Ribonuclease PH domain 2-like	0	DIRECT
RNA polymerase subunits	0	DIRECT
FAD-linked oxidases, C-terminal domain	0	DIRECT
LigT-like	0	DIRECT
ADC-like	0	DIRECT
Enolase C-terminal domain-like	0	DIRECT
PA domain	0	DIRECT
Nitrite and sulphite reductase 4Fe-4S domain-like	0	DIRECT
Staphylococcal nuclease	0	DIRECT
AN1-like Zinc finger	0	DIRECT
Glycolipid transfer protein, GLTP	0	DIRECT
Type II DNA topoisomerase	0	DIRECT
Eukaryotic RPB5 N-terminal domain	0	DIRECT
Tubulin C-terminal domain-like	0	DIRECT
LysM domain	0	DIRECT
C-terminal, gelsolin-like domain of Sec23/24	0	DIRECT
Single hybrid motif	0	DIRECT
Phospholipase C/P1 nuclease	0	DIRECT
Calcium ATPase, transmembrane domain M	0	DIRECT
PRTase-like	0	DIRECT
AMPKBI-like	0	DIRECT
MurD-like peptide ligases, peptide-binding domain	0	DIRECT
GAT-like domain	0	DIRECT
Cullin homology domain	0	DIRECT
RBP11-like subunits of RNA polymerase	0	DIRECT
eIF1-like	0	DIRECT
V-type ATPase subunit E-like	0	DIRECT
Oxygen-evolving enhancer protein 3,	0	DIRECT
Cytochrome b5-like heme/steroid binding domain	0	DIRECT
FAD/NAD-linked reductases, dimerisation (C-terminal) domain	0	DIRECT
RraA-like	0	DIRECT
Electron transport accessory proteins	0	DIRECT
Tautomerase/MIF	0	DIRECT
Ribosomal protein S2	0	DIRECT
Zinc beta-ribbon	0	DIRECT
ACT-like	0	DIRECT
lambda repressor-like DNA-binding domains	0	DIRECT
Peptidyl-tRNA hydrolase II	0	DIRECT
CO dehydrogenase ISP C-domain like	0	DIRECT
Nop domain	0	DIRECT
Oxidoreductase molybdopterin-binding domain	0	DIRECT
HSP40/DnaJ peptide-binding domain	0	DIRECT
PAP/OAS1 substrate-binding domain	0	DIRECT
SAM/Pointed domain	0	DIRECT
S13-like H2TH domain	0	DIRECT
Rubredoxin-like	0	DIRECT
Translation proteins	0	DIRECT
Macro domain-like	0	DIRECT
Peptidase/esterase 'gauge' domain	0	DIRECT
SIS domain	0	DIRECT
Cryptochrome/photolyase FAD-binding domain	0	DIRECT
GINS helical bundle-like	0	DIRECT
Initiation factor IF2/eIF5b, domain 3	0	DIRECT
Translational machinery components	0	DIRECT
F1F0 ATP synthase subunit C	0	DIRECT
SNARE fusion complex	0	DIRECT
MurD-like peptide ligases, catalytic domain	0	DIRECT
NAD(P)-linked oxidoreductase	0	DIRECT
Signal peptide-binding domain	0	DIRECT
Serine metabolism enzymes domain	0	DIRECT
ATP synthase (F1-ATPase), gamma subunit	0	DIRECT
Aldolase	0	DIRECT
Ypt/Rab-GAP domain of gyp1p	0	DIRECT
Cdc48 domain 2-like	0	DIRECT
GAF domain-like	0	DIRECT
Allene oxide cyclase-like	0	DIRECT
Cytochrome c	0	DIRECT
Alpha subunit of glutamate synthase, C-terminal domain	0	DIRECT
YVTN repeat-like/Quinoprotein amine dehydrogenase	0	DIRECT
Sec63 N-terminal domain-like	0	DIRECT
Cu,Zn superoxide dismutase-like	0	DIRECT
Ribosomal protein S10	0	DIRECT
Ribosomal protein L29 (L29p)	0	DIRECT
Succinyl-CoA synthetase domains	0	DIRECT
(Phosphotyrosine protein) phosphatases II	0	DIRECT
Actin-crosslinking proteins	0	DIRECT
L9 N-domain-like	0	DIRECT
Peptide methionine sulfoxide reductase	0	DIRECT
Amine oxidase N-terminal region	0	DIRECT
MOSC N-terminal domain-like	0	DIRECT
FAD-dependent thiol oxidase	0	DIRECT
Casein kinase II beta subunit	0	DIRECT
Acyl-CoA binding protein	0	DIRECT
Nucleotidyltransferase	0	DIRECT
N-terminal domain of the delta subunit of the F1F0-ATP synthase	0	DIRECT
Pentapeptide repeat-like	0	DIRECT
Cation efflux protein cytoplasmic domain-like	0	DIRECT
AF1104-like	0	DIRECT
FMN-binding split barrel	0	DIRECT
FAH	0	DIRECT
Enolase N-terminal domain-like	0	DIRECT
Caspase-like	0	DIRECT
Cation efflux protein transmembrane domain-like	0	DIRECT
DEK C-terminal domain	0	DIRECT
Zinc hairpin stack	0	DIRECT
Ribosomal protein S8	0	DIRECT
Coiled-coil domain of nucleotide exchange factor GrpE	0	DIRECT
Zn-dependent exopeptidases	0	DIRECT
Ribosomal protein L31e	0	DIRECT
Isochorismatase-like hydrolases	0	DIRECT
CYTH-like phosphatases	0	DIRECT
C-terminal autoproteolytic domain of nucleoporin nup98	0	DIRECT
Rhodanese/Cell cycle control phosphatase	0	DIRECT
CRAL/TRIO N-terminal domain	0	DIRECT
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	0	DIRECT
Inosine monophosphate dehydrogenase (IMPDH)	0	DIRECT
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	0	DIRECT
LeuD/IlvD-like	0	DIRECT
PAZ domain	0	DIRECT
WW domain	0	DIRECT
Supernatant protein factor (SPF), C-terminal domain	0	DIRECT
PAH2 domain	0	DIRECT
Galactose mutarotase-like	0	DIRECT
Ribosomal protein L14	0	DIRECT
HIT-like	0	DIRECT
Leukotriene A4 hydrolase N-terminal domain	0	DIRECT
Clathrin adaptor appendage domain	0	DIRECT
Sigma3 and sigma4 domains of RNA polymerase sigma factors	0	DIRECT
LDH C-terminal domain-like	0	DIRECT
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	0	DIRECT
beta-carbonic anhydrase, cab	0	DIRECT
Gamma-glutamyl cyclotransferase-like	0	DIRECT
BEACH domain	0	DIRECT
L28p-like	0	DIRECT
Nucleotidylyl transferase	0	DIRECT
GroEL-intermediate domain like	0	DIRECT
Cystatin/monellin	0	DIRECT
Creatinase/aminopeptidase	0	DIRECT
SAICAR synthase-like	0	DIRECT
Prokaryotic ribosomal protein L17	0	DIRECT
Metallo-hydrolase/oxidoreductase	0	DIRECT
Ammonium transporter	0	DIRECT
VHP, Villin headpiece domain	0	DIRECT
ARM repeat	0	DIRECT
Formate/glycerate dehydrogenase catalytic domain-like	0	DIRECT
Activating enzymes of the ubiquitin-like proteins	0	DIRECT
Aconitase iron-sulfur domain	0	DIRECT
Nudix	0	DIRECT
DUSP-like	0	DIRECT
Glutathione synthetase ATP-binding domain-like	0	DIRECT
Glycoside hydrolase/deacetylase	0	DIRECT
DNA clamp	0	DIRECT
Acid phosphatase/Vanadium-dependent haloperoxidase	0	DIRECT
tRNA-binding arm	0	DIRECT
P-domain of calnexin/calreticulin	0	DIRECT
Homocysteine S-methyltransferase	0	DIRECT
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	0	DIRECT
Acyl-CoA dehydrogenase C-terminal domain-like	0	DIRECT
NAD kinase/diacylglycerol kinase-like	0	DIRECT
Ribosomal protein L1	0	DIRECT
ClpP/crotonase	0	DIRECT
Homodimeric domain of signal transducing histidine kinase	0	DIRECT
Trimeric LpxA-like enzymes	0	DIRECT
Amine oxidase catalytic domain	0	DIRECT
Putative isomerase YbhE	0	DIRECT
Cyclin-like	0	DIRECT
Mitochondrial glycoprotein MAM33-like	0	DIRECT
Ferritin-like	0	DIRECT
Endosomal sorting complex assembly domain	0	DIRECT
Molybdenum cofactor-binding domain	0	DIRECT
RL5-like	0	DIRECT
HMG-box	0	DIRECT
Calcium ATPase, transduction domain A	0	DIRECT
DNA repair protein MutS, domain II	0	DIRECT
BolA-like	0	DIRECT
Cryptochrome/photolyase, N-terminal domain	0	DIRECT
Carbonic anhydrase	0	DIRECT
SufE/NifU	0	DIRECT
D-ribose-5-phosphate isomerase (RpiA), lid domain	0	DIRECT
At5g01610-like	0	DIRECT
PLC-like phosphodiesterases	0	DIRECT
Preprotein translocase SecE subunit	0	DIRECT
GroEL apical domain-like	0	DIRECT
Glutamine synthetase/guanido kinase	0	DIRECT
Seven-hairpin glycosidases	0	DIRECT
E2F-DP heterodimerization region	0	DIRECT
Phosphoglycerate mutase-like	0	DIRECT
Retrovirus zinc finger-like domains	0	DIRECT
Families 57/38 glycoside transferase middle domain	0	DIRECT
Smc hinge domain	0	DIRECT
Saposin	0	DIRECT
Quinoprotein alcohol dehydrogenase-like	0	DIRECT
Ribulose-phoshate binding barrel	0	DIRECT
GHMP Kinase, C-terminal domain	0	DIRECT
Metal cation-transporting ATPase, ATP-binding domain N	0	DIRECT
Dihydrofolate reductase-like	0	DIRECT
PX domain	0	DIRECT
PAP/Archaeal CCA-adding enzyme, C-terminal domain	0	DIRECT
Profilin (actin-binding protein)	0	DIRECT
Chromo domain-like	0	DIRECT
ACP-like	0	DIRECT
beta-sandwich domain of Sec23/24	0	DIRECT
Translation proteins SH3-like domain	0	DIRECT
6-phosphogluconate dehydrogenase C-terminal domain-like	0	DIRECT
Acetyl-CoA synthetase-like	0	DIRECT
D-aminoacid aminotransferase-like PLP-dependent enzymes	0	DIRECT
SWIB/MDM2 domain	0	DIRECT
Rhomboid-like	0	DIRECT
Calponin-homology domain, CH-domain	0	DIRECT
Radical SAM enzymes	0	DIRECT
Thioesterase/thiol ester dehydrase-isomerase	0	DIRECT
ssDNA-binding transcriptional regulator domain	0	DIRECT
Carbon-nitrogen hydrolase	0	DIRECT
Flavoproteins	0	DIRECT
Dimeric alpha+beta barrel	0	DIRECT
4Fe-4S ferredoxins	0	DIRECT
Pentein	0	DIRECT
FAS1 domain	0	DIRECT
PYP-like sensor domain (PAS domain)	0	DIRECT
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	0	DIRECT
DLC	0	DIRECT
LEA14-like	0	DIRECT
Ribosomal protein L39e	0	DIRECT
dsRNA-binding domain-like	0	DIRECT
FAD-linked reductases, C-terminal domain	0	DIRECT
Ribosomal protein L13	0	DIRECT
Tetrapyrrole methylase	0	DIRECT
Zn-finger domain of Sec23/24	0	DIRECT
Nicotinate/Quinolinate PRTase N-terminal domain-like	0	DIRECT
DNA repair protein MutS, domain III	0	DIRECT
Clc chloride channel	0	DIRECT
RplX-like	0	DIRECT
Ribosomal protein L30p/L7e	0	DIRECT
Ribosomal protein L6	0	DIRECT
Ribosomal protein L19 (L19e)	0	DIRECT
Ribosomal proteins S24e, L23 and L15e	0	DIRECT
ADC synthase	0	DIRECT
Ribosomal protein L16p/L10e	0	DIRECT
Eukaryotic type KH-domain (KH-domain type I)	0	DIRECT
GroES-like	0	DIRECT
Ribosomal L11/L12e N-terminal domain	0	DIRECT
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	0	DIRECT
Release factor	0	DIRECT
Chorismate mutase II	0	DIRECT
NagB/RpiA/CoA transferase-like	0	DIRECT
Calcium-dependent phosphotriesterase	0	DIRECT
Probable bacterial effector-binding domain	0	DIRECT
Ricin B-like lectins	0	DIRECT
Poly A polymerase C-terminal region-like	0	DIRECT
SBT domain	0	DIRECT
Nicotinate/Quinolinate PRTase C-terminal domain-like	0	DIRECT
Tryptophan synthase beta subunit-like PLP-dependent enzymes	0	DIRECT
Ribosomal proteins L15p and L18e	0	DIRECT
Amidase signature (AS) enzymes	0	DIRECT
GroEL equatorial domain-like	0	DIRECT
Scorpion toxin-like	0	DIRECT
FtsH protease domain-like	0	DIRECT
ISP domain	0	DIRECT
Zinc-binding domain of translation initiation factor 2 beta	0	DIRECT
PreATP-grasp domain	0	DIRECT
GTPase activation domain, GAP	0	DIRECT
DnaJ/Hsp40 cysteine-rich domain	0	DIRECT
Lesion bypass DNA polymerase (Y-family), little finger domain	0	DIRECT
FAD-linked oxidoreductase	0	DIRECT
Fe-S cluster assembly (FSCA) domain-like	0	DIRECT
Cysteine alpha-hairpin motif	0	DIRECT
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	0	DIRECT
Cyclophilin-like	0	DIRECT
Thiolase-like	0	DIRECT
BAR/IMD domain-like	0	DIRECT
Plus3-like	0	DIRECT
R3H domain	0	DIRECT
eIF4e-like	0	DIRECT
Band 7/SPFH domain	0	DIRECT
Phosphofructokinase	0	DIRECT
alpha/beta knot	0	DIRECT
Head domain of nucleotide exchange factor GrpE	0	DIRECT
Glutamine synthetase, N-terminal domain	0	DIRECT
FF domain	0	DIRECT
Ribosomal L27 protein-like	0	DIRECT
RuBisCo LSMT C-terminal, substrate-binding domain	0	DIRECT
CAD & PB1 domains	0	DIRECT
SpoIIaa-like	0	DIRECT
Trypsin-like serine proteases	0	DIRECT
Ribosomal protein L11, C-terminal domain	0	DIRECT
Diaminopimelate epimerase-like	0	DIRECT
BRCT domain	0	DIRECT
Metallo-dependent hydrolases	0	DIRECT
Mss4-like	0	DIRECT
Phosphoglycerate kinase	0	DIRECT
WD40 repeat-like	0.001799	INHERITED FROM: pollen development stage || floral organ differentiation stage
RNA-binding domain, RBD	0.004422	INHERITED FROM: calyx development stage || sepals enclosing flower bud stage || 4 leaf senescence stage
HAD-like	0.005069	INHERITED FROM: androecium development stage || pollen development stage
C2 domain (Calcium/lipid-binding domain, CaLB)	0.05675	INHERITED FROM: androecium development stage || pollen development stage
Ubiquitin-like	0.1307	INHERITED FROM: androecium development stage || pollen development stage
PH domain-like	0.1761	INHERITED FROM: androecium development stage || pollen development stage
RING/U-box	0.2045	INHERITED FROM: androecium development stage || pollen development stage
EF-hand	0.3059	INHERITED FROM: androecium development stage || pollen development stage
t-snare proteins	0.6106	INHERITED FROM: M germinated pollen stage || androecium development stage || pollen development stage
UBC-like	0.6139	INHERITED FROM: androecium development stage || pollen development stage
ArfGap/RecO-like zinc finger	0.7826	INHERITED FROM: L mature pollen stage || M germinated pollen stage || androecium development stage || pollen development stage
Mitochondrial carrier	0.8334	INHERITED FROM: androecium development stage || pollen development stage
SNARE-like	0.8841	INHERITED FROM: androecium development stage || pollen development stage
Homeodomain-like	1	INHERITED FROM: 4 root elongation stage || root development stage
HLH, helix-loop-helix DNA-binding domain	1	INHERITED FROM: gynoecium development stage

Family domains annotated to this AP term (Not in SDAP)
Highlighted in gray are those with FDR_all>0.001

SCOP term	FDR (all)	Annotation (direct or inherited)
Mammalian PLC	0	DIRECT
Ribosomal protein L5	0	DIRECT
Crambin-like	0	DIRECT
GAF domain	0	DIRECT
BolA-like	0	DIRECT
4HBT-like	0	DIRECT
DnaQ-like 3'-5' exonuclease	0	DIRECT
Ribosomal protein L19 (L19e)	0	DIRECT
Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain	0	DIRECT
Gamma-glutamyl cyclotransferase-like	0	DIRECT
UBX domain	0	DIRECT
Acireductone dioxygenase	0	DIRECT
D-ribose-5-phosphate isomerase (RpiA), catalytic domain	0	DIRECT
Bacterial dinuclear zinc exopeptidases	0	DIRECT
GAT domain	0	DIRECT
Chromo barrel domain	0	DIRECT
Amine oxidase N-terminal region	0	DIRECT
Armadillo repeat	0	DIRECT
HspBP1 domain	0	DIRECT
GDI-like N domain	0	DIRECT
Biotin dependent carboxylase carboxyltransferase domain	0	DIRECT
HIT (HINT, histidine triad) family of protein kinase-interacting proteins	0	DIRECT
Cystathionine synthase-like	0	DIRECT
Homoserine dehydrogenase-like	0	DIRECT
UDP-glucose/GDP-mannose dehydrogenase C-terminal domain	0	DIRECT
GAPDH-like	0	DIRECT
Class-II DAHP synthetase	0	DIRECT
Cyclin A/CDK2-associated p19, Skp2	0	DIRECT
Steroid-binding domain	0	DIRECT
PhzC/PhzF-like	0	DIRECT
Cofactor-dependent phosphoglycerate mutase	0	DIRECT
Methyl-CpG-binding domain, MBD	0	DIRECT
Spermidine synthase	0	DIRECT
Molybdenum cofactor biosynthesis protein MoeB	0	DIRECT
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	0	DIRECT
MutT-like	0	DIRECT
Calcium ATPase, transduction domain A	0	DIRECT
Thioesterases	0	DIRECT
Cryptochrome/photolyase FAD-binding domain	0	DIRECT
Plant stress-induced protein	0	DIRECT
AF1104-like	0	DIRECT
beta-sandwich domain of Sec23/24	0	DIRECT
Cell cycle arrest protein BUB3	0	DIRECT
Ribosomal L11/L12e N-terminal domain	0	DIRECT
HesB-like domain	0	DIRECT
Clp protease, ClpP subunit	0	DIRECT
HSP40/DnaJ peptide-binding domain	0	DIRECT
Calnexin/calreticulin	0	DIRECT
HMGL-like	0	DIRECT
Hect, E3 ligase catalytic domain	0	DIRECT
Glycosyl hydrolases family 32 N-terminal domain	0	DIRECT
Eukaryotic RPB5 N-terminal domain	0	DIRECT
DNA repair glycosylase, 2 C-terminal domains	0	DIRECT
Ribosomal protein S8	0	DIRECT
Zinc hairpin stack	0	DIRECT
SelR domain	0	DIRECT
Coiled-coil domain of nucleotide exchange factor GrpE	0	DIRECT
Homodimeric domain of signal transducing histidine kinase	0	DIRECT
CAT-like	0	DIRECT
Sigma4 domain	0	DIRECT
B56-like	0	DIRECT
Ribosomal protein L14	0	DIRECT
Cation efflux protein cytoplasmic domain-like	0	DIRECT
DEK C-terminal domain	0	DIRECT
Ribosomal protein S15	0	DIRECT
FAH	0	DIRECT
Enolase	0	DIRECT
Enolase N-terminal domain-like	0	DIRECT
Pyridoxal-dependent decarboxylase	0	DIRECT
NifU C-terminal domain-like	0	DIRECT
Ring hydroxylating alpha subunit ISP domain	0	DIRECT
Ribosomal protein L31e	0	DIRECT
Metal cation-transporting ATPase, ATP-binding domain N	0	DIRECT
NAP-like	0	DIRECT
Ribosomal protein S13	0	DIRECT
Ribonucleotide reductase-like	0	DIRECT
Glutamine synthetase, N-terminal domain	0	DIRECT
Inosine monophosphate dehydrogenase (IMPDH)	0	DIRECT
Flavin-binding PAS domain	0	DIRECT
GroEL chaperone, ATPase domain	0	DIRECT
C-terminal autoproteolytic domain of nucleoporin nup98	0	DIRECT
N-acetyl-l-glutamate kinase	0	DIRECT
C-terminal, gelsolin-like domain of Sec23/24	0	DIRECT
Meta-cation ATPase, catalytic domain P	0	DIRECT
D-ribose-5-phosphate isomerase (RpiA), lid domain	0	DIRECT
Ubiquitin carboxyl-terminal hydrolase UCH-L	0	DIRECT
Single-domain sulfurtransferase	0	DIRECT
Subtilase propeptides/inhibitors	0	DIRECT
L-aminoacid/polyamine oxidase	0	DIRECT
Pyruvate oxidase and decarboxylase PP module	0	DIRECT
Shikimate kinase (AroK)	0	DIRECT
DNase I-like	0	DIRECT
Cyclophilin (peptidylprolyl isomerase)	0	DIRECT
Preprotein translocase SecE subunit	0	DIRECT
Ribosomal protein L3	0	DIRECT
Band 7/SPFH domain	0	DIRECT
FucT-like	0	DIRECT
PCI domain (PINT motif)	0	DIRECT
Single strand DNA-binding domain, SSB	0	DIRECT
Reductases	0	DIRECT
Ubiquitin carboxyl-terminal hydrolase, UCH	0	DIRECT
Phosphoribosyltransferases (PRTases)	0	DIRECT
MIF4G domain-like	0	DIRECT
Transcriptional coactivator PC4 C-terminal domain	0	DIRECT
ERF1/Dom34 C-terminal domain-like	0	DIRECT
Ribosomal protein L10e	0	DIRECT
Inorganic pyrophosphatase	0	DIRECT
2Fe-2S ferredoxin-related	0	DIRECT
Lactate & malate dehydrogenases, C-terminal domain	0	DIRECT
Retrovirus zinc finger-like domains	0	DIRECT
Cullin homology domain	0	DIRECT
HAT/Suf repeat	0	DIRECT
GroEL-like chaperone, apical domain	0	DIRECT
Prokaryotic ribosomal protein L17	0	DIRECT
Acetyl-CoA synthetase-like	0	DIRECT
PNP-oxidase like	0	DIRECT
Creatinase/aminopeptidase	0	DIRECT
Aconitase iron-sulfur domain	0	DIRECT
Receiver domain of the ethylene receptor	0	DIRECT
NHL repeat	0	DIRECT
PHD domain	0	DIRECT
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	0	DIRECT
Ribosomal protein S6	0	DIRECT
Medium chain acyl-CoA dehydrogenase-like, C-terminal domain	0	DIRECT
alpha-mannosidase, domain 2	0	DIRECT
SOUL heme-binding protein	0	DIRECT
Ribosomal protein L11, C-terminal domain	0	DIRECT
PAPS sulfotransferase	0	DIRECT
SWIB/MDM2 domain	0	DIRECT
LeuD-like	0	DIRECT
5' nucleotidase-like	0	DIRECT
Clc chloride channel	0	DIRECT
FYVE, a phosphatidylinositol-3-phosphate binding domain	0	DIRECT
P-domain of calnexin/calreticulin	0	DIRECT
SAM (sterile alpha motif) domain	0	DIRECT
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	0	DIRECT
Crotonase-like	0	DIRECT
Trehalose-6-phosphate synthase, OtsA	0	DIRECT
Domain of the SRP/SRP receptor G-proteins	0	DIRECT
Isochorismatase-like hydrolases	0	DIRECT
Sigma2 domain of RNA polymerase sigma factors	0	DIRECT
R3H domain	0	DIRECT
Serine acetyltransferase	0	DIRECT
Glyoxalase II (hydroxyacylglutathione hydrolase)	0	DIRECT
Alcohol dehydrogenase-like, C-terminal domain	0	DIRECT
Cytochrome b5	0	DIRECT
Amine oxidase catalytic domain	0	DIRECT
Rubredoxin	0	DIRECT
Ferritin	0	DIRECT
NagZ-like	0	DIRECT
Ribosomal protein L18 and S11	0	DIRECT
Myf domain	0	DIRECT
N-terminal, heterodimerisation domain of RBP7 (RpoE)	0	DIRECT
Translational machinery components	0	DIRECT
alpha-mannosidase	0	DIRECT
GroEL-like chaperone, intermediate domain	0	DIRECT
VHP, Villin headpiece domain	0	DIRECT
CoA-binding domain	0	DIRECT
LEA14-like	0	DIRECT
AN1-like Zinc finger	0	DIRECT
Amidase signature (AS) enzymes	0	DIRECT
Double-stranded RNA-binding domain (dsRBD)	0	DIRECT
Pollen allergen PHL P 1 N-terminal domain	0	DIRECT
Leukotriene A4 hydrolase catalytic domain	0	DIRECT
HCDH C-domain-like	0	DIRECT
Patatin	0	DIRECT
Phosphoenolpyruvate mutase/Isocitrate lyase-like	0	DIRECT
GroES	0	DIRECT
Thiolase-related	0	DIRECT
Transcription factor IIB (TFIIB), core domain	0	DIRECT
Staphylococcal nuclease	0	DIRECT
Sec63 C-terminal domain-like	0	DIRECT
Linker histone H1/H5	0	DIRECT
FF domain	0	DIRECT
Smc hinge domain	0	DIRECT
BSD domain	0	DIRECT
D-aminoacid aminotransferase-like PLP-dependent enzymes	0	DIRECT
Glycolipid transfer protein, GLTP	0	DIRECT
PDI-like	0	DIRECT
Tryptophan synthase beta subunit-like PLP-dependent enzymes	0	DIRECT
LplA-like	0	DIRECT
Ribosomal protein L1	0	DIRECT
SCF ubiquitin ligase complex WHB domain	0	DIRECT
3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB	0	DIRECT
Phosphoglycerate kinase	0	DIRECT
Pleckstrin-homology domain (PH domain)	0	DIRECT
UDP-glucose pyrophosphorylase	0	DIRECT
Phoshoinositide 3-kinase (PI3K), catalytic domain	0	DIRECT
Formyltransferase	0	DIRECT
CO dehydrogenase flavoprotein N-terminal domain-like	0	DIRECT
GABARAP-like	0	DIRECT
LON domain-like	0	DIRECT
IPP isomerase-like	0	DIRECT
YicI catalytic domain-like	0	DIRECT
Ribosomal protein L10-like	0	DIRECT
Pseudouridine synthase I TruA	0	DIRECT
Profilin (actin-binding protein)	0	DIRECT
HD domain	0	DIRECT
Poly(A) polymerase, PAP, N-terminal domain	0	DIRECT
Beta-D-glucan exohydrolase, C-terminal domain	0	DIRECT
Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	0	DIRECT
Ferredoxin reductase FAD-binding domain-like	0	DIRECT
PAPS reductase-like	0	DIRECT
Poly(A) polymerase, PAP, C-terminal domain	0	DIRECT
YicI N-terminal domain-like	0	DIRECT
Eps15 homology domain (EH domain)	0	DIRECT
Phosphoinositide-binding clathrin adaptor, N-terminal domain	0	DIRECT
Branched-chain alpha-keto acid dehydrogenase Pyr module	0	DIRECT
Magnesium transport protein CorA, transmembrane region	0	DIRECT
Macro domain	0	DIRECT
Predicted hydrolases Cof	0	DIRECT
HAL/PAL-like	0	DIRECT
BC N-terminal domain-like	0	DIRECT
DnaJ/Hsp40 cysteine-rich domain	0	DIRECT
Cation efflux protein transmembrane domain-like	0	DIRECT
RNB domain-like	0	DIRECT
ATP-dependent protease Lon (La), catalytic domain	0	DIRECT
Poly A polymerase C-terminal region-like	0	DIRECT
CAF1-like ribonuclease	0	DIRECT
ValRS/IleRS/LeuRS editing domain	0	DIRECT
C5 cytosine-specific DNA methylase, DCM	0	DIRECT
Hermes transposase-like	0	DIRECT
HEAT repeat	0	DIRECT
DNA gyrase/MutL, second domain	0	DIRECT
PUA domain	0	DIRECT
Phosphofructokinase	0	DIRECT
RWD domain	0	DIRECT
RplX-like	0	DIRECT
ARID domain	0	DIRECT
beta-N-acetylhexosaminidase catalytic domain	0	DIRECT
SerA intervening domain-like	0	DIRECT
Tetrapyrrole methylase	0	DIRECT
GHMP Kinase, N-terminal domain	0	DIRECT
Plant C2H2 finger (QALGGH zinc finger)	0	DIRECT
Lipoxigenase N-terminal domain	0	DIRECT
beta-carbonic anhydrase, cab	0	DIRECT
Pathogenesis-related protein 10 (PR10)-like	0	DIRECT
PWWP domain	0	DIRECT
DLC	0	DIRECT
Aspartokinase allosteric domain-like	0	DIRECT
Head domain of nucleotide exchange factor GrpE	0	DIRECT
SpoU-like RNA 2'-O ribose methyltransferase	0	DIRECT
Plus3	0	DIRECT
MSP-like	0	DIRECT
DNA polymerase I	0	DIRECT
Choline kinase	0	DIRECT
Poly(A) polymerase, PAP, middle domain	0	DIRECT
Tryptophan biosynthesis enzymes	0	DIRECT
Anticodon-binding domain	0	DIRECT
Cold shock DNA-binding domain-like	0	DIRECT
Ribosomal protein L22	0	DIRECT
FtsH protease domain-like	0	DIRECT
CRAL/TRIO N-terminal domain	0	DIRECT
LDH N-terminal domain-like	0	DIRECT
Anti-sigma factor antagonist SpoIIaa	0	DIRECT
Tubulin, GTPase domain	0	DIRECT
GlmU C-terminal domain-like	0	DIRECT
Tim10/DDP	0	DIRECT
Bromodomain	0	DIRECT
Cryptochrome/photolyase, N-terminal domain	0	DIRECT
Gelsolin-like	0	DIRECT
RuBisCo LSMT C-terminal, substrate-binding domain	0	DIRECT
Chromo domain	0	DIRECT
Mitochondrial glycoprotein MAM33-like	0	DIRECT
NagB-like	0	DIRECT
Cullin repeat	0	DIRECT
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	0	DIRECT
Ribosomal proteins L24p and L21e	0	DIRECT
Mo25 protein	0	DIRECT
PX domain	0	DIRECT
Acyl-carrier protein (ACP)	0	DIRECT
NOL1/NOP2/sun	0	DIRECT
ERF1/Dom34 middle domain-like	0	DIRECT
S-adenosylmethionine decarboxylase	0	DIRECT
Cytochrome p450 reductase N-terminal domain-like	0	DIRECT
FAD-linked reductases, N-terminal domain	0	DIRECT
Glycosyl transferases group 1	0	DIRECT
NadC C-terminal domain-like	0	DIRECT
XPC-binding domain	0	DIRECT
RibA-like	0	DIRECT
Folylpolyglutamate synthetase	0	DIRECT
Ribosomal protein L30p/L7e	0	DIRECT
Type II DNA topoisomerase	0	DIRECT
SBT domain	0	DIRECT
Phosphoribosylpyrophosphate synthetase-like	0	DIRECT
DUSP, domain in ubiquitin-specific proteases	0	DIRECT
ADC synthase	0	DIRECT
Methionine aminopeptidase, insert domain	0	DIRECT
rRNA adenine dimethylase-like	0	DIRECT
CHY zinc finger	0	DIRECT
Ribosomal protein L6	0	DIRECT
Nucleoside diphosphate kinase, NDK	0	DIRECT
Internalin LRR domain	0	DIRECT
FAD-dependent thiol oxidase	0	DIRECT
Chaperone J-domain	0	DIRECT
Ribonuclease PH domain 1-like	0	DIRECT
Ribosomal protein L39e	0	DIRECT
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	0	DIRECT
Helical domain of Sec23/24	0	DIRECT
14-3-3 protein	0	DIRECT
Ribosomal protein L13	0	DIRECT
Oxysterol-binding protein	0	DIRECT
Plant transcriptional regulator PBF-2	0	DIRECT
GARP response regulators	0	DIRECT
Succinyl-CoA synthetase, beta-chain, N-terminal domain	0	DIRECT
SAP domain	0	DIRECT
S-adenosylmethionine synthetase	0	DIRECT
Cyclin	0	DIRECT
PABC (PABP) domain	0	DIRECT
WW domain	0	DIRECT
Sm motif of small nuclear ribonucleoproteins, SNRNP	0	DIRECT
Clathrin adaptor core protein	0	DIRECT
Prolyl oligopeptidase, N-terminal domain	0	DIRECT
Ribosomal proteins L15p and L18e	0	DIRECT
Dual specificity phosphatase-like	0	DIRECT
Regulator of chromosome condensation RCC1	0	DIRECT
GMC oxidoreductases	0	DIRECT
Clathrin adaptor appendage, alpha and beta chain-specific domain	0	DIRECT
RNA polymerase II subunit RBP4 (RpoF)	0	DIRECT
RNase III catalytic domain-like	0	DIRECT
Translation initiation factor eIF4e	0	DIRECT
Tail specific protease, catalytic domain	0	DIRECT
Gamma-glutamyltranspeptidase-like	0	DIRECT
Sec1/munc18-like (SM) proteins	0	DIRECT
1,3-glucuronyltransferase	0	DIRECT
Phosphoglucomutase, first 3 domains	0	DIRECT
Protein prenyltransferases	0	DIRECT
UDP-glucose/GDP-mannose dehydrogenase dimerisation domain	0	DIRECT
Nuclear movement domain	0	DIRECT
gamma-carbonic anhydrase-like	0	DIRECT
Heme-dependent catalases	0	DIRECT
MIF-related	0	DIRECT
glucose-1-phosphate thymidylyltransferase	0	DIRECT
CO dehydrogenase molybdoprotein N-domain-like	0	DIRECT
Chalcone synthase-like	0	DIRECT
NSFL1 (p97 ATPase) cofactor p47, SEP domain	0	DIRECT
Release factor	0	DIRECT
PHL pollen allergen	0	DIRECT
ZZ domain	0	DIRECT
Phosphoglucomutase, C-terminal domain	0	DIRECT
SufE-like	0	DIRECT
VHS domain	0	DIRECT
U-box	0	DIRECT
Class II glutamine amidotransferases	0	DIRECT
RuBisCo LSMT catalytic domain	0	DIRECT
eIF5a N-terminal domain-like	0	DIRECT
Pseudouridine synthase II TruB	0	DIRECT
CYTH domain	0	DIRECT
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain	0	DIRECT
CO dehydrogenase flavoprotein C-terminal domain-like	0	DIRECT
Preprotein translocase SecY subunit	0	DIRECT
Zinc-binding domain of translation initiation factor 2 beta	0	DIRECT
Phosphoenolpyruvate carboxylase	0	DIRECT
Acyl-ACP thioesterase-like	0	DIRECT
beta-Phosphoglucomutase-like	0	DIRECT
Erythroid transcription factor GATA-1	0	DIRECT
Glycerol-3-phosphate transporter	0	DIRECT
Glycerol-3-phosphate dehydrogenase	0	DIRECT
ATP synthase (F1-ATPase), gamma subunit	0	DIRECT
Pectate lyase-like	0	DIRECT
Neurolysin-like	0	DIRECT
Molybdenum cofactor-binding domain	0	DIRECT
Sec63 N-terminal domain	0	DIRECT
Group II chaperonin (CCT, TRIC), ATPase domain	0	DIRECT
DJ-1/PfpI	0	DIRECT
Starch-binding domain	0	DIRECT
Trunk domain of Sec23/24	0	DIRECT
AMPK-beta glycogen binding domain-like	0	DIRECT
DNA gyrase/MutL, N-terminal domain	0	DIRECT
LIM domain	0	DIRECT
Granulin repeat	0	DIRECT
The spindle assembly checkpoint protein mad2	0	DIRECT
LysM domain	0	DIRECT
Transducin (alpha subunit), insertion domain	0	DIRECT
Glyoxalase I (lactoylglutathione lyase)	0	DIRECT
PsbP-like	0	DIRECT
Phytochrome-specific domain	0	DIRECT
Voltage-gated potassium channels	0	DIRECT
GYF domain	0	DIRECT
BAR domain	0	DIRECT
TAZ domain	0	DIRECT
NADPH-cytochrome p450 reductase FAD-binding domain-like	0	DIRECT
Carbonic anhydrase	0	DIRECT
DNA ligase/mRNA capping enzyme postcatalytic domain	0	DIRECT
Hypothetical protein HI1317	0	DIRECT
Dihydrodipicolinate reductase-like	0	DIRECT
Poly(ADP-ribose) polymerase, C-terminal domain	0	DIRECT
MPP-like	0	DIRECT
Isoprenyl diphosphate synthases	0	DIRECT
Transcriptional factor domain	0	DIRECT
acyl-CoA oxidase C-terminal domains	0	DIRECT
acyl-CoA oxidase N-terminal domains	0	DIRECT
DNA repair protein MutS, domain I	0	DIRECT
Rhomboid-like	0	DIRECT
Aminomethyltransferase folate-binding domain	0	DIRECT
Class I alpha-1;2-mannosidase, catalytic domain	0	DIRECT
Group II chaperonin (CCT, TRIC), intermediate domain	0	DIRECT
Smr domain	0	DIRECT
CO dehydrogenase ISP C-domain like	0	DIRECT
Thioltransferase	0	DIRECT
FAS1 domain	0	DIRECT
SH3-domain	0	DIRECT
BEACH domain	0	DIRECT
Zf-UBP	0	DIRECT
ATP sulfurylase catalytic domain	0	DIRECT
Amylase, catalytic domain	0	DIRECT
Sedlin (SEDL)	0	DIRECT
Ubiquitin activating enzymes (UBA)	0	DIRECT
Prokaryotic proteases	0	DIRECT
NADPH-cytochrome p450 reductase-like	0	DIRECT
beta-Galactosidase/glucuronidase, N-terminal domain	0	DIRECT
Cytidylyltransferase	0	DIRECT
alpha-mannosidase, C-terminal domain	0	DIRECT
Adenain-like	0	DIRECT
Phosphoinositide-binding clathrin adaptor, domain 2	0	DIRECT
Peptidyl-tRNA hydrolase-like	0	DIRECT
Plant lipoxigenases	0	DIRECT
F1F0 ATP synthase subunit C	0	DIRECT
Formin homology 2 domain (FH2 domain)	0	DIRECT
Carboxylesterase	0	DIRECT
AMPKBI-like	0	DIRECT
DNA polymerase processivity factor	0	DIRECT
Prokaryotic type KH domain (KH-domain type II)	0	DIRECT
Poly A polymerase head domain-like	0	DIRECT
CBS-domain pair	0	DIRECT
D-ribulose-5-phosphate 3-epimerase	0	DIRECT
Hypothetical protein At2g34160	0	DIRECT
Pyruvate oxidase and decarboxylase Pyr module	0	DIRECT
Chalcone isomerase	0	DIRECT
SWIRM domain	0	DIRECT
ATP-dependent DNA ligase catalytic domain	0	DIRECT
PB1 domain	0	DIRECT
NLI interacting factor-like phosphatase	0	DIRECT
Peptide methionine sulfoxide reductase	0	DIRECT
N-acetyl transferase, NAT	0	DIRECT
Glycosyl hydrolases family 35 catalytic domain	0	DIRECT
Tubulin, C-terminal domain	0	DIRECT
Formate/glycerate dehydrogenases, substrate-binding domain	0	DIRECT
Clathrin coat assembly domain	0	DIRECT
Molybdenum-containing oxidoreductases-like dimerisation domain	0	DIRECT
Prefoldin	0	DIRECT
Thioredoxin-like 2Fe-2S ferredoxin	0	DIRECT
Calponin-homology domain, CH-domain	0	DIRECT
Ribosomal protein L19	0	DIRECT
Succinyl-CoA synthetase domains	0	DIRECT
Ribosomal S5 protein, N-terminal domain	0	DIRECT
ATP-dependent DNA ligase DNA-binding domain	0	DIRECT
Cdc48 domain 2-like	0	DIRECT
Allosteric chorismate mutase	0	DIRECT
28-residue LRR	0	DIRECT
Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain	0	DIRECT
3-Methyladenine DNA glycosylase I (Tag)	0	DIRECT
Biotinyl/lipoyl-carrier proteins and domains	0	DIRECT
RraA-like	0	DIRECT
Class I aldolase	0	DIRECT
Cytokinin dehydrogenase 1	0	DIRECT
Tetratricopeptide repeat (TPR)	0	DIRECT
Alcohol dehydrogenase-like, N-terminal domain	0	DIRECT
Oxygen-evolving enhancer protein 3,	0	DIRECT
Histidine kinase	0	DIRECT
Galactosyltransferase LgtC	0	DIRECT
Glutamine synthetase catalytic domain	0	DIRECT
monodomain cytochrome c	0	DIRECT
Ribosomal protein L37e	0	DIRECT
Nitrogenase iron protein-like	0	DIRECT
Diacylglycerol kinase-like	0	DIRECT
Zn-finger domain of Sec23/24	0	DIRECT
L23p	0	DIRECT
Hypothetical protein YjiA, C-terminal domain	0	DIRECT
DNA polymerase III clamp loader subunits, C-terminal domain	0	DIRECT
Formate/glycerate dehydrogenases, NAD-domain	0	DIRECT
HMG-box	0	DIRECT
V-type ATPase subunit E	0	DIRECT
Aldose 1-epimerase (mutarotase)	0	DIRECT
AlkB-like	0	DIRECT
RNA-polymerase beta-prime	0	DIRECT
RelA/SpoT domain	0	DIRECT
Plant defensins	0	DIRECT
Translation initiation factor 2 beta, aIF2beta, N-terminal domain	0	DIRECT
FAD/NAD-linked reductases, dimerisation (C-terminal) domain	0	DIRECT
NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain	0	DIRECT
BC C-terminal domain-like	0	DIRECT
NadC N-terminal domain-like	0	DIRECT
G domain-linked domain	0	DIRECT
Lesion bypass DNA polymerase (Y-family), catalytic domain	0	DIRECT
Branched-chain alpha-keto acid dehydrogenase PP module	0	DIRECT
IF2B-like	0	DIRECT
Homocysteine S-methyltransferase	0	DIRECT
cAMP-binding domain	0	DIRECT
La domain	0	DIRECT
Ribonuclease Rh-like	0	DIRECT
Carbon-carbon bond hydrolase	0	DIRECT
Ran-binding domain	0	DIRECT
Ribosomal protein L4	0	DIRECT
SNARE fusion complex	0	DIRECT
EDF1-like	0	DIRECT
TRM1-like	0	DIRECT
Bacterial exopeptidase dimerisation domain	0	DIRECT
alpha-Amylases, C-terminal beta-sheet domain	0	DIRECT
E2F dimerization segment	0	DIRECT
Peptidyl-tRNA hydrolase II	0	DIRECT
PA domain	0	DIRECT
WrbA-like	0	DIRECT
Nitrite and sulphite reductase 4Fe-4S domain-like	0	DIRECT
Class I aminoacyl-tRNA synthetases (RS), catalytic domain	0	DIRECT
FKBP immunophilin/proline isomerase	0	DIRECT
Elongation factor TFIIS domain 2	0	DIRECT
Ribonuclease PH domain 2-like	0	DIRECT
Sec7 domain	0	DIRECT
RPB5	0	DIRECT
Hypothetical protein TM1112	0	DIRECT
Initiation factor IF2/eIF5b, domain 3	0	DIRECT
Eukaryotic type KH-domain (KH-domain type I)	0	DIRECT
DNA-binding domain of EIN3-like	0	DIRECT
CRAL/TRIO domain	0	DIRECT
Cu,Zn superoxide dismutase-like	0	DIRECT
Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta	0	DIRECT
Rps19E-like	0	DIRECT
Alpha-adaptin ear subdomain-like	0	DIRECT
EF-G/eEF-2 domains III and V	0	DIRECT
PAH2 domain	0	DIRECT
Tetramerization domain of potassium channels	0	DIRECT
eIF1-like	0	DIRECT
DNA repair protein MutS, domain III	0	DIRECT
Acyl-CoA binding protein	0	DIRECT
COMT-like	0	DIRECT
Calcium ATPase, transmembrane domain M	0	DIRECT
PAZ domain	0	DIRECT
Adenosine-5'phosphosulfate kinase (APS kinase)	0	DIRECT
At5g01610-like	0	DIRECT
STAR domain	0	DIRECT
N-type ATP pyrophosphatases	0	DIRECT
(Glycosyl)asparaginase	0	DIRECT
Alpha subunit of glutamate synthase, C-terminal domain	0	DIRECT
Gastric lipase	0	DIRECT
Deoxycytidylate deaminase-like	0	DIRECT
Putative glucosidase YicI, domain 3	0	DIRECT
Glycerophosphoryl diester phosphodiesterase	0	DIRECT
Glycosyl hydrolases family 32 C-terminal domain	0	DIRECT
RhoGDI-like	0	DIRECT
Kunitz (STI) inhibitors	0	DIRECT
Ammonium transporter	0	DIRECT
Allene oxide cyclase-like	0	DIRECT
ATP sulfurylase N-terminal domain	0	DIRECT
E-set domains of sugar-utilizing enzymes	0	DIRECT
Pentapeptide repeats	0	DIRECT
BCR-homology GTPase activation domain (BH-domain)	0	DIRECT
Ribosomal protein S10	0	DIRECT
P1 nuclease	0	DIRECT
Nop domain	0	DIRECT
MioX-like	0	DIRECT
SIAH, seven in absentia homolog	0	DIRECT
6-phosphogluconate dehydrogenase-like, N-terminal domain	0	DIRECT
Ribosomal protein S27e	0	DIRECT
PaaI/YdiI-like	0	DIRECT
Pyruvate oxidase and decarboxylase, middle domain	0	DIRECT
Tudor domain	0	DIRECT
Pumilio repeat	0	DIRECT
Leukotriene A4 hydrolase N-terminal domain	0	DIRECT
alpha-D-mannose-specific plant lectins	0	DIRECT
Cystatins	0	DIRECT
Prolyl oligopeptidase, C-terminal domain	0	DIRECT
NifU/IscU domain	0	DIRECT
Ribosomal protein S2	0	DIRECT
BphP N-terminal domain-like	0	DIRECT
Synatpobrevin N-terminal domain	0	DIRECT
RNA methyltransferase FtsJ	0	DIRECT
Prokaryotic type I DNA topoisomerase	0	DIRECT
Elongation factors	0	DIRECT
RNase Z-like	0	DIRECT
RNA-polymerase beta	0	DIRECT
Swaposin	0	DIRECT
Group II chaperonin (CCT, TRIC), apical domain	0	DIRECT
MYND zinc finger	0	DIRECT
Gtf glycosyltransferase	0	DIRECT
PLC-like (P variant)	0	DIRECT
Casein kinase II beta subunit	0	DIRECT
Ribosomal protein L29 (L29p)	0	DIRECT
Cdc48 N-terminal domain-like	0	DIRECT
Aldo-keto reductases (NADP)	0	DIRECT
Signal peptide-binding domain	0	DIRECT
Ypt/Rab-GAP domain of gyp1p	0	DIRECT
Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains	0	DIRECT
Aminoacid dehydrogenases	0	DIRECT
Glucose 6-phosphate dehydrogenase-like	0	DIRECT
Oxidoreductase molybdopterin-binding domain	0	DIRECT
BC ATP-binding domain-like	0	DIRECT
HCP-like	0	DIRECT
G proteins	0.0006037	DIRECT
WD40-repeat	0.0008109	DIRECT
Canonical RBD	0.002455	INHERITED FROM: calyx development stage || sepals enclosing flower bud stage || 4 leaf senescence stage
t-snare proteins	0.6193	INHERITED FROM: M germinated pollen stage || androecium development stage || pollen development stage
UBC-related	0.6968	INHERITED FROM: androecium development stage || pollen development stage
Pyk2-associated protein beta ARF-GAP domain	0.782	INHERITED FROM: L mature pollen stage || M germinated pollen stage || androecium development stage || pollen development stage
Mitochondrial carrier	0.8409	INHERITED FROM: androecium development stage || pollen development stage
HLH, helix-loop-helix DNA-binding domain	1	INHERITED FROM: gynoecium development stage
Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	1	INHERITED FROM: M germinated pollen stage || androecium development stage || pollen development stage