SUPERFAMILY 1.75 HMM library and genome assignments server

Plant structure DEvelopment stage (PDE): seed development stage

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Root: AP Hierarchy (arabidopsis plant ontology with 2 sub-ontologies AN, DE)

Shortest distance to current term (+ for parents, - for children) AP term [AP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ 1:   plant structure development stage [PO:0009012] <7>
0:   seed development stage [PO:0001170] <6>(27|34) (28|15|6)
- 1:   endosperm development stage [PO:0007633] <3>(0|0) (0|0|0)
- 1:   developing seed stage [PO:0004506](0|0) (0|0|0)
- 1:   dry seed stage [PO:0001040](1|0) (1|1|0)
- 1:   fertilized ovule stage [PO:0004505](0|0) (0|0|0)
- 1:   seed dormant stage [PO:0025374](0|0) (0|0|0)
- 1:   seed maturation stage [PO:0007632](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
NAD(P)-binding Rossmann-fold domains0.000000000005145Direct
GroEL-intermediate domain like0.000000002573Direct
GroEL equatorial domain-like0.000000004755Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00000002179Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.00000002294Direct
GroEL apical domain-like0.00000002353Direct
14-3-3 protein0.0000001059Direct
FAD/NAD-linked reductases, dimerisation (C-terminal) domain0.0000004479Direct
Actin-like ATPase domain0.0000006303Direct
S-adenosylmethionine synthetase0.000002532Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.00000575Direct
TK C-terminal domain-like0.00001711Direct
LDH C-terminal domain-like0.00001711Direct
Succinyl-CoA synthetase domains0.00003601Direct
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain0.00003734Direct
Citrate synthase0.00008178Direct
RmlC-like cupins0.0001454Direct
Apolipoprotein A-I0.0001592Direct
Ferritin-like0.0001782Direct
Aldolase0.0002512Direct
Mannose-binding lectins0.0002522Direct
Tryptophan synthase beta subunit-like PLP-dependent enzymes0.0003473Direct
GST C-terminal domain-like0.000565Direct
Thiamin diphosphate-binding fold (THDP-binding)0.0008019Direct
Single hybrid motif0.0008019Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Proteasome subunits0.000000000006434Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.00000003989Direct
14-3-3 protein0.0000003012Direct
FAD/NAD-linked reductases, dimerisation (C-terminal) domain0.000001076Direct
CoA-binding domain0.000004339Direct
S-adenosylmethionine synthetase0.000004339Direct
Actin/HSP700.000006492Direct
FAD/NAD-linked reductases, N-terminal and central domains0.00001252Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.00001352Direct
GroEL chaperone, ATPase domain0.00001765Direct
GroEL-like chaperone, apical domain0.00001765Direct
GroEL-like chaperone, intermediate domain0.00001765Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00001765Direct
Group II chaperonin (CCT, TRIC), intermediate domain0.00002102Direct
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain0.00003099Direct
Lactate & malate dehydrogenases, C-terminal domain0.0000342Direct
LDH N-terminal domain-like0.0000342Direct
Germin/Seed storage 7S protein0.00004232Direct
Succinyl-CoA synthetase domains0.00006112Direct
PDI-like0.0001009Direct
GAPDH-like0.0001383Direct
Citrate synthase0.0001383Direct
Class I aldolase0.0001589Direct
Group II chaperonin (CCT, TRIC), apical domain0.0001589Direct
RecA protein-like (ATPase-domain)0.0002396Direct
CAT-like0.0002682Direct
Pathogenesis-related protein 10 (PR10)-like0.0002682Direct
Formate/glycerate dehydrogenases, substrate-binding domain0.0002682Direct
Tyrosine-dependent oxidoreductases0.0003894Direct
Mannose-binding lectins0.0004904Direct
Tryptophan synthase beta subunit-like PLP-dependent enzymes0.0006735Direct
Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain0.0007566Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
NAD(P)-binding Rossmann-fold domains0.000000000004323Direct
GroEL-intermediate domain like0.000000002162Direct
GroEL equatorial domain-like0.000000003995Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00000001832Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.00000001928Direct
GroEL apical domain-like0.00000001978Direct
14-3-3 protein0.00000008902Direct
FAD/NAD-linked reductases, dimerisation (C-terminal) domain0.0000003767Direct
Actin-like ATPase domain0.0000005301Direct
S-adenosylmethionine synthetase0.00000213Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.000004837Direct
TK C-terminal domain-like0.00001441Direct
LDH C-terminal domain-like0.00001441Direct
Succinyl-CoA synthetase domains0.00003033Direct
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain0.00003145Direct
Citrate synthase0.00006891Direct
RmlC-like cupins0.0001226Direct
Apolipoprotein A-I0.0001343Direct
Ferritin-like0.0001503Direct
Aldolase0.000212Direct
Mannose-binding lectins0.0002129Direct
Tryptophan synthase beta subunit-like PLP-dependent enzymes0.0002936Direct
GST C-terminal domain-like0.0004778Direct
Thiamin diphosphate-binding fold (THDP-binding)0.0006788Direct
Single hybrid motif0.0006788Direct
Formate/glycerate dehydrogenase catalytic domain-like0.0008539Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000000002162Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000000002162Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.00000001928Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.000000124Direct
    51905,55424
  • 51905 - FAD/NAD(P)-binding domain
  • 55424 - FAD/NAD-linked reductases, dimerisation (C-terminal) domain
  • 0.0000003767Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.00000157Direct
    55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0.00000213Direct
    52518,52922
  • 52518 - Thiamin diphosphate-binding fold (THDP-binding)
  • 52922 - TK C-terminal domain-like
  • 0.00001441Direct
    51735,56327
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 56327 - LDH C-terminal domain-like
  • 0.00001441Direct
    51101,51101
  • 51101 - Mannose-binding lectins
  • 51101 - Mannose-binding lectins
  • 0.00001441Direct
    51735,55347
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 55347 - Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
  • 0.00003145Direct
    52833,52833
  • 52833 - Thioredoxin-like
  • 52833 - Thioredoxin-like
  • 0.0001503Direct
    52283,51735
  • 52283 - Formate/glycerate dehydrogenase catalytic domain-like
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 0.0005845Direct
    52833,47616
  • 52833 - Thioredoxin-like
  • 47616 - GST C-terminal domain-like
  • 0.0009814Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000000002162Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.00000001928Direct
    51101,51101,51101
  • 51101 - Mannose-binding lectins
  • 51101 - Mannose-binding lectins
  • 51101 - Mannose-binding lectins
  • 0.0000013Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.00000157Direct
    55973,55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0.00000213Direct
    52833,52833,52833
  • 52833 - Thioredoxin-like
  • 52833 - Thioredoxin-like
  • 52833 - Thioredoxin-like
  • 0.000382Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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