SUPERFAMILY 1.75 HMM library and genome assignments server

Genome Names, Identifiers and Phylogenetic Trees

Create custom lists of genome identifiers or phylogenetic trees.

These lists of genomes can be used to plot phylogenetic trees on this page, or to compare genomes on other pages. Click on the sTOL logo on the right to browse GO terms distributed over the tree.


Plot phylogenetic tree for selected genomes:

 
  Select Function of Node Hyperlinks:
  • Subtree
  • Ancestral State
Plot tree as:
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  ...or Download in Newick Format:
  • SUPERFAMILY codes
  • NCBI taxonomy IDs
  • Full names
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Select a list of genome identifiers

Build a list of comma separated genome identifiers using the genome checkboxes and/or taxon links.

Selected genomes: Mmm,RxS,7ko,gr,nq,ST,TT,hg,n4,n3,ns,yh,ve,vd,q0,lth,fg,nx,fo,fv,R0R,wt,3Ju,re,nj,hfv,6mX,EPt,b7,lz,Fm1,FSZ,6z5,qg,txD,ztx,4IZ,wc,l3,K5N,UlW,t4,nd,yo,PCo,qe,ym,q3,LLd,j2,hk,qc,AR,o7,TV,TP,TR,iv,i6,im,ur,nh,PC,qxC,vXE,ao,qYv,an,HlW,GrQ,KZp,Rcy,AC,gi,oVw,CUl,a8,zmD,a5,gq,a7,PM,dox,TM,q8,0Rm,ip,ng,ly,dh,q7,wfR,CD,t3,ik,al,zk,WIB,yl,Sj2,iu,90j,PP,vw,gl,yv,y4,kw,go,urB,yz,y6,y8,xs,y1,kl,A8o,o9,hj,po

The values in the 'Code' column are the 2-letter genome identifiers used by the SUPERFAMILY database. Some of the identifiers have a relation to the species name, but many do not.

Add strains

Select Code Name Genus Family Order Class Phylum Kingdom Superkingdom
hsHomo sapiens 76_38
xpPan troglodytes 76_2.1.4
gxGorilla gorilla 76_3.1
ofPongo abelii 76_2
NlNomascus leucogenys 76_1.0
hFlPapio anubis 76
ruMacaca mulatta 76_1
CJCallithrix jacchus 76_3.2.1
obOtolemur garnettii 76_3
ioMicrocebus murinus 76_1
ihTarsius syrichta 76_1
rnRattus norvegicus 76_5.0
mmMus musculus 76_38
gbIctidomys tridecemlineatus 76_2
inDipodomys ordii 76_1
HgHeterocephalus glaber v1.7-2
guCavia porcellus 76_3
okOryctolagus cuniculus 76_2
oqOchotona princeps 76
tzTupaia belangeri 76
SSSus scrofa 76_10.2
bvBos taurus 76_3.1
tfIOvis aries 76_3.1
vuVicugna pacos 76_1
utTursiops truncatus 76_1
MpfMustela putorius furo 76_1.0
PAAiluropoda melanoleuca 76_1
dgCanis familiaris 76_3.1
feFelis catus 76_6.2
eqEquus caballus 76_2
luMyotis lucifugus 76_2.0
vrPteropus vampyrus 76_1
xrSorex araneus 76_1
ekErinaceus europaeus 76
vnProcavia capensis 76_1
lkLoxodonta africana 76_3
eeEchinops telfairi 76
d5Dasypus novemcinctus 76_2
GGCholoepus hoffmanni 76_1
mrMacropus eugenii 76_1.0
TdSarcophilus harrisii 76_7.0
opMonodelphis domestica 76_5
ohOrnithorhynchus anatinus 76_5
SKSaccoglossus kowalevskii v3.0
PmPetromyzon marinus 76_7.0
zfTaeniopygia guttata 76_3.2.4
Pr5Ficedula albicollis 76_1.0
MLMeleagris gallopavo 76_2
ggGallus gallus 76_4
7N1Anas platyrhynchos 76_1.0
PsiPelodiscus sinensis 76_1.0
nkAnolis carolinensis 76_2.0
xlXenopus laevis
xnXenopus tropicalis 76_4.2
LcLatimeria chalumnae 76_1
74pLepisosteus oculatus 76
CoGadus morhua 76_1
tnTetraodon nigroviridis 76_8
toTakifugu rubripes 76_4
gcGasterosteus aculeatus 76_1
olOryzias latipes 76_1
XmXiphophorus maculatus 76_4.4.2
vR2Poecilia formosa 76
OnOreochromis niloticus 76_1.0
94RAstyanax mexicanus 76
daDanio rerio 76_9
w1Oikopleura dioica
c0Ciona savignyi 76_2.0
isCiona intestinalis 76
tuStrongylocentrotus purpuratus v3.1
bfOctopus bimaculoides 280
UcXCrassostrea gigas 22
gyLottia gigantea
hxHelobdella robusta
i1Capitella sp. I
DpDanaus plexippus OGS1.0
HmHeliconius melpomene
omBombyx mori
nzNasonia vitripennis
aiApis mellifera 38.2d
zgHarpegnathos saltator v3.3
zlLinepithema humile v1.1
znSolenopsis invicta v.2.2.3
zjPogonomyrmex barbatus v1.2
AeAcromyrmex echinatior v3.8
zbAtta cephalotes v1.1
zdCamponotus floridanus v3.3
gdDrosophila grimshawi 1.3
gwDrosophila willistoni 1.3
doDrosophila pseudoobscura 2.13
dqDrosophila persimilis 1.3
DsDrosophila suzukii
dyDrosophila yakuba 1.3
dwDrosophila simulans 1.3
dzDrosophila sechellia 1.3
ddDrosophila melanogaster 76_5
geDrosophila erecta 1.3
dkDrosophila ananassae 1.3
duDrosophila virilis 1.2
dxDrosophila mojavensis 1.3
DGNMegaselia scalaris 22
axAedes aegypti 55
ieCulex pipiens quinquefasciatus
nzUAnopheles darlingi 22
agAnopheles gambiae 49_3j
tjTribolium castaneum 3.0
hvPediculus humanus corporis
yk1Rhodnius prolixus 22
qpAcyrthosiphon pisum
d7Daphnia pulex
m08Strigamia maritima 22
TuTetranychus urticae
iiIxodes scapularis
wpPristionchus pacificus
MIMeloidogyne incognita
MhMeloidogyne hapla
SiOOnchocerca volvulus 22
r0Brugia malayi WS218
wjCaenorhabditis japonica
wnCaenorhabditis brenneri
wrCaenorhabditis remanei
clCaenorhabditis elegans 76_235
cwCaenorhabditis briggsae 2
4v4Trichinella spiralis 22
HymHymenolepis microstoma
maaEchinococcus multilocularis
EcgEchinococcus granulosus
TsTaenia solium
hzSchistosoma mansoni
APAcropora digitifera v1.0
nwNematostella vectensis 1.0
qmHydra vulgaris
z4Amphimedon queenslandica
rqTrichoplax adhaerens
PRProterospongia sp. ATCC 50818
ovMonosiga brevicollis
SASphaeroforma arctica JP610
wzCapsaspora owczarzaki ATCC 30864
x6lConidiobolus coronatus NRRL28638 v1.0
gzMalassezia globosa CBS 7966
IA4Sporisorium reilianum 22
umUstilago maydis
qnWallemia sebi v1.0
mWgMixia osmundae IAM 14324 v1.0
OwfCronartium quercuum f. sp. fusiforme G11 v1.0
p4Puccinia graminis f. sp. tritici CRL 75-36-700-3
qlMelampsora laricis-populina
qbRhodotorula graminis WP1 v1.0
yuSporobolomyces roseus IAM 13481
X4qMicrobotryum violaceum 22
iUFSphaerobolus stellatus v1.0
NX7Piloderma croceum F 1598 v1.0
SLSerpula lacrymans var. lacrymans S7.9
q1Coniophora puteana
dUPHydnomerulius pinastri v2.0
fu6Paxillus rubicundulus Ve08.2h10 v1.0
rAMPisolithus microcarpus 441 v1.0
i0vPisolithus tinctorius Marx 270 v1.0
KRsScleroderma citrinum Foug A v1.0
orCoprinopsis cinerea okayama7 130 v3
POPleurotus ostreatus
aIMAmanita thiersii Skay4041 v1.0
bU9Amanita muscaria Koide v1.0
GfCGalerina marginata v1.0
VL4Hebeloma cylindrosporum h7 v2.0
loLaccaria bicolor S238N-H82
ABAgaricus bisporus var. bisporus
zcSchizophyllum commune
qiStereum hirsutum FP-91666 SS1 v1.0
qaHeterobasidion annosum
q6Gloeophyllum trabeumv1.0
q9Punctularia strigosozonata v1.0
fcPhanerochaete chrysosporium RP-78 2.1
rXiSebacina vermifera MAFF 305830 v1.0
q4Fomitiporia mediterranea v1.0
1baTulasnella calospora AL13/4D v1.0
iaPostia placenta
qoWolfiporia cocos MD-104 SS10 v1.0
q5Fomitopsis pinicolav1.0
h5JFomitopsis pinicola FP-58527 SS1 v3.0
qjTrametes versicolor v1.0
q2Dichomitus squalens
lqTremella mesenterica
MmmApiospora montagnei NRRL 25634 v1.0
RxSDaldinia eschscholzii EC12 v1.0
7koMagnaporthe poae ATCC 64411 22
grMagnaporthe grisea 70-15
nqPodospora anserina
STSporotrichum thermophile ATCC 42464
TTThielavia terrestris NRRL 8126
hgChaetomium globosum CBS 148.51
n4Neurospora tetrasperma
n3Neurospora discreta FGSC 8579
nsNeurospora crassa OR74A
yhCryphonectria parasitica
veVerticillium albo-atrum VaMs.102
vdVerticillium dahliae VdLs.17
q0Acremonium alcalophilumv 1.0
lthGlomerella graminicola 22
fgFusarium graminearum
nxNectria haematococca mpVI
foFusarium oxysporum f. sp. lycopersici 4286
fvFusarium verticillioides 7600
R0RTrichoderma asperellum CBS 433.97 v1.0
wtTrichoderma atroviride
3JuTrichoderma citrinoviride v1.0
reTrichoderma reesei 1.2
njTrichoderma virens Gv29-8
hfvTrichoderma longibrachiatum ATCC 18648 v1.0
6mXTrichoderma harzianum CBS 226.95 v1.0
EPtAmorphotheca resinae v1.0
b7Botrytis cinerea B05.10
lzSclerotinia sclerotiorum
Fm1Blumeria graminis 22
FSZDidymella exigua CBS 183.55 v1.0
6z5Leptosphaeria maculans 22
qgSetosphaeria turcica v1.0
txDCochliobolus miyabeanus ATCC 44560 v1.0
ztxCochliobolus victoriae FI3 v1.0
4IZCochliobolus carbonum 26-R-13 v1.0
wcCochliobolus heterostrophus
l3Alternaria brassicicola
K5NCochliobolus lunatus m118 v2.0
UlWPyrenophora teres f. teres 22
t4Pyrenophora tritici-repentis
ndStagonospora nodorum
yoMycosphaerella graminicola IPO323
PCoZasmidium cellare ATCC 36951 v1.0
qeSeptoria musiva v1.0
ymMycosphaerella fijiensis CIRAD86
q3Dothistroma septosporum
LLdAureobasidium pullulans var. subglaciale EXF-2481 v1.0
j2Ajellomyces dermatitidis SLH14081
hkHistoplasma capsulatum class NAmI strain WU24
qcMicrosporum canis CBS 113480
ARArthroderma benhamiae CBS 112371
o7Trichophyton equinum CBS 127.97
TVTrichophyton verrucosum HKI 0517
TPTrichophyton tonsurans CBS 112818
TRTrichophyton rubrum CBS 118892
ivParacoccidioides brasiliensis Pb18
i6Coccidioides posadasii RMSCC 3488
imCoccidioides immitis RS
urUncinocarpus reesii 1704
nhNeosartorya fischeri NRRL 181
PCPenicillium chrysogenum Wisconsin 54-1255
qxCPenicillium chrysogenum v1.0
vXEAspergillus acidus v1.0
aoAspergillus fumigatus Af293
qYvAspergillus brasiliensis v1.0
anAspergillus nidulans FGSC A4
HlWAspergillus sydowii v1.0
GrQAspergillus versicolor v1.0
KZpAspergillus glaucus
RcyAspergillus zonatus v1.0
ACAspergillus carbonarius ITEM 5010
giAspergillus terreus NIH2624
oVwAspergillus tubingensis v1.0
CUlAspergillus wentii v1.0
a8Aspergillus oryzae RIB40
zmDAspergillus niger 22
a5Aspergillus niger ATCC 1015
gqAspergillus flavus NRRL3357
a7Aspergillus clavatus NRRL 1
PMPenicillium marneffei ATCC 18224
doxTuber melanosporum Mel28 22
TMTuber melanosporum Vittad
q8Pichia membranifaciensv1.0
0RmBabjeviella inositovora NRRL Y-12698 v1.0
ipPichia stipitis CBS 6054
ngCandida guilliermondii ATCC 6260
lyLodderomyces elongisporus NRRL YB-4239
dhDebaromyces hansenii