SUPERFAMILY 1.75 HMM library and genome assignments server

Genome Names, Identifiers and Phylogenetic Trees

Create custom lists of genome identifiers or phylogenetic trees.

These lists of genomes can be used to plot phylogenetic trees on this page, or to compare genomes on other pages. Click on the sTOL logo on the right to browse GO terms distributed over the tree.


Plot phylogenetic tree for selected genomes:

 
  Select Function of Node Hyperlinks:
  • Subtree
  • Ancestral State
Plot tree as:
  • PNG
  • PDF
  • SVG
  ...or Download in Newick Format:
  • SUPERFAMILY codes
  • NCBI taxonomy IDs
  • Full names
(show help)

Select a list of genome identifiers

Build a list of comma separated genome identifiers using the genome checkboxes and/or taxon links.

Selected genomes: hs,xp,gx,of,Nl,hFl,ru,CJ,ob,io,ih,rn,mm,gb,in,Hg,gu,ok,oq,tz,SS,bv,tfI,vu,ut,Mpf,PA,dg,fe,eq,lu,vr,xr,ek,vn,lk,ee,d5,GG,mr,Td,op,oh,SK,Pm,zf,Pr5,ML,gg,7N1,Psi,nk,xl,xn,Lc,74p,Co,tn,to,gc,ol,Xm,vR2,On,94R,da,w1,c0,is,tu,bf,UcX,gy,hx,i1,Dp,Hm,om,nz,ai,zg,zl,zn,zj,Ae,zb,zd,gd,gw,do,dq,Ds,dy,dw,dz,dd,ge,dk,du,dx,DGN,ax,ie,nzU,ag,tj,hv,yk1,qp,d7,m08,Tu,ii,wp,MI,Mh,SiO,r0,wj,wn,wr,cl,cw,4v4,Hym,maa,Ecg,Ts,hz,AP,nw,qm,z4,rq,PR,ov,SA,wz,x6l,gz,IA4,um,qn,mWg,Owf,p4,ql,qb,yu,X4q,iUF,NX7,SL,q1,dUP,fu6,rAM,i0v,KRs,or,PO,aIM,bU9,GfC,VL4,lo,AB,zc,qi,qa,q6,q9,fc,rXi,q4,1ba,ia,qo,q5,h5J,qj,q2,lq,Mmm,RxS,7ko,gr,nq,ST,TT,hg,n4,n3,ns,yh,ve,vd,q0,lth,fg,nx,fo,fv,R0R,wt,3Ju,re,nj,hfv,6mX,EPt,b7,lz,Fm1,FSZ,6z5,qg,txD,ztx,4IZ,wc,l3,K5N,UlW,t4,nd,yo,PCo,qe,ym,q3,LLd,j2,hk,qc,AR,o7,TV,TP,TR,iv,i6,im,ur,nh,PC,qxC,vXE,ao,qYv,an,HlW,GrQ,KZp,Rcy,AC,gi,oVw,CUl,a8,zmD,a5,gq,a7,PM,dox,TM,q8,0Rm,ip,ng,ly,dh,q7,wfR,CD,t3,ik,al,zk,WIB,yl,Sj2,iu,90j,PP,vw,gl,yv,y4,kw,go,urB,yz,y6,y8,xs,y1,kl,A8o,o9,hj,po,C24,AM,Mv,hn,ry,ul,rzm,zi,dt,yd,ED,EI,en,gj,Ppi,Ppa,Eg,Tc,p5l,Cc,Cs,kle,Bra,p06,l4,at,r6,mw,9UD,yg,CU,w3,cwb,PE,Zra,ME,pt,vt,MG,z7,pT,ACh,Ac,wUr,UJc,Ov1,BD,NGD,QxX,117,Og,jS2,X03,Fzj,os,AnK,Phe,ze,e0I,oj,Si,LPn,Mba,t09,r9u,pw,o8,oz,ou,Ba,ij,iq,CX,Ach,h2,vg,vo,BHK,cy,H7u,ya,Pop,Tt,iSI,gf,Cyp,LM,em,lh,ib,TI,uz,o6,Tb,tb,Es,a6,hqz,zUU,Dhk,Pu,tfV,5oN,cM3,ra,sj,iy,yy,V7G,wf,wa,wg,Pma,ir,hy,Im,rm,uc,cv,un,uv,ue,ug,o0,pv,nu,pl,vx,fw,py,fy,fb,Smn,eb,tx,Gt,we

The values in the 'Code' column are the 2-letter genome identifiers used by the SUPERFAMILY database. Some of the identifiers have a relation to the species name, but many do not.

Add strains

Select Code Name Genus Family Order Class Phylum Kingdom Superkingdom
hsHomo sapiens 76_38
xpPan troglodytes 76_2.1.4
gxGorilla gorilla 76_3.1
ofPongo abelii 76_2
NlNomascus leucogenys 76_1.0
hFlPapio anubis 76
ruMacaca mulatta 76_1
CJCallithrix jacchus 76_3.2.1
obOtolemur garnettii 76_3
ioMicrocebus murinus 76_1
ihTarsius syrichta 76_1
rnRattus norvegicus 76_5.0
mmMus musculus 76_38
gbIctidomys tridecemlineatus 76_2
inDipodomys ordii 76_1
HgHeterocephalus glaber v1.7-2
guCavia porcellus 76_3
okOryctolagus cuniculus 76_2
oqOchotona princeps 76
tzTupaia belangeri 76
SSSus scrofa 76_10.2
bvBos taurus 76_3.1
tfIOvis aries 76_3.1
vuVicugna pacos 76_1
utTursiops truncatus 76_1
MpfMustela putorius furo 76_1.0
PAAiluropoda melanoleuca 76_1
dgCanis familiaris 76_3.1
feFelis catus 76_6.2
eqEquus caballus 76_2
luMyotis lucifugus 76_2.0
vrPteropus vampyrus 76_1
xrSorex araneus 76_1
ekErinaceus europaeus 76
vnProcavia capensis 76_1
lkLoxodonta africana 76_3
eeEchinops telfairi 76
d5Dasypus novemcinctus 76_2
GGCholoepus hoffmanni 76_1
mrMacropus eugenii 76_1.0
TdSarcophilus harrisii 76_7.0
opMonodelphis domestica 76_5
ohOrnithorhynchus anatinus 76_5
SKSaccoglossus kowalevskii v3.0
PmPetromyzon marinus 76_7.0
zfTaeniopygia guttata 76_3.2.4
Pr5Ficedula albicollis 76_1.0
MLMeleagris gallopavo 76_2
ggGallus gallus 76_4
7N1Anas platyrhynchos 76_1.0
PsiPelodiscus sinensis 76_1.0
nkAnolis carolinensis 76_2.0
xlXenopus laevis
xnXenopus tropicalis 76_4.2
LcLatimeria chalumnae 76_1
74pLepisosteus oculatus 76
CoGadus morhua 76_1
tnTetraodon nigroviridis 76_8
toTakifugu rubripes 76_4
gcGasterosteus aculeatus 76_1
olOryzias latipes 76_1
XmXiphophorus maculatus 76_4.4.2
vR2Poecilia formosa 76
OnOreochromis niloticus 76_1.0
94RAstyanax mexicanus 76
daDanio rerio 76_9
w1Oikopleura dioica
c0Ciona savignyi 76_2.0
isCiona intestinalis 76
tuStrongylocentrotus purpuratus v3.1
bfOctopus bimaculoides 280
UcXCrassostrea gigas 22
gyLottia gigantea
hxHelobdella robusta
i1Capitella sp. I
DpDanaus plexippus OGS1.0
HmHeliconius melpomene
omBombyx mori
nzNasonia vitripennis
aiApis mellifera 38.2d
zgHarpegnathos saltator v3.3
zlLinepithema humile v1.1
znSolenopsis invicta v.2.2.3
zjPogonomyrmex barbatus v1.2
AeAcromyrmex echinatior v3.8
zbAtta cephalotes v1.1
zdCamponotus floridanus v3.3
gdDrosophila grimshawi 1.3
gwDrosophila willistoni 1.3
doDrosophila pseudoobscura 2.13
dqDrosophila persimilis 1.3
DsDrosophila suzukii
dyDrosophila yakuba 1.3
dwDrosophila simulans 1.3
dzDrosophila sechellia 1.3