SUPERFAMILY 1.75 HMM library and genome assignments server

  Home > Genome names, identifiers and phylogenetic trees

Genome Names, Identifiers and Phylogenetic Trees

Create custom lists of genome identifiers or phylogenetic trees.

These lists of genomes can be used to plot phylogenetic trees on this page, or to compare genomes on other pages. Click on the sTOL logo on the right to browse GO terms distributed over the tree.

Genome Identifier to Name Search:
Include strains:

Select a list of genome identifiers

Build a list of comma separated genome identifiers using the genome checkboxes and/or taxon links.

The values in the 'Code' column are the 2-letter genome identifiers used by the SUPERFAMILY database. Some of the identifiers have a relation to the species name, but many do not.

Add strains

Select Code Name Genus Family Order Class Phylum Kingdom Superkingdom
hsHomo sapiens 66_37
xpPan troglodytes 66_214
gxGorilla gorilla 66_31
ofPongo abelii 66_1
NlNomascus leucogenys 66_1
ruMacaca mulatta 66_10
CJCallithrix jacchus 66_321
obOtolemur garnettii 66_3
ioMicrocebus murinus 66_1
ihTarsius syrichta 66_1
rnRattus norvegicus 66_34
mmMus musculus 66_37
gbSpermophilus tridecemlineatus 66_1
inDipodomys ordii 66_1
HgHeterocephalus glaber v1.7-2
guCavia porcellus 66_3
okOryctolagus cuniculus 66_3
oqOchotona princeps 66_1
tzTupaia belangeri 66_1
SSSus scrofa 66_9
bvBos taurus 66_31
vuVicugna pacos 66_1
utTursiops truncatus 66_1
PAAiluropoda melanoleuca 66_1
dgCanis familiaris 66_2
feFelis catus 66_1
eqEquus caballus 66_2
luMyotis lucifugus 66_2
vrPteropus vampyrus 66_1
xrSorex araneus 66_1
ekErinaceus europaeus 66_1
vnProcavia capensis 66_1
lkLoxodonta africana 66_3
eeEchinops telfairi 66_1
d5Dasypus novemcinctus 66_2
GGCholoepus hoffmanni 66_1
mrMacropus eugenii 66_1
TdSarcophilus harrisii 66_7
opMonodelphis domestica 66_5
ohOrnithorhynchus anatinus 66_1
SKSaccoglossus kowalevskii v3.0
PmPetromyzon marinus 66_7
LcLatimeria chalumnae 66_1
nkAnolis carolinensis 66_2
zfTaeniopygia guttata 66_1
MLMeleagris gallopavo 66_21
ggGallus gallus 66_2
xlXenopus laevis
xnXenopus tropicalis 66_42
daDanio rerio 66_9
CoGadus morhua 66_1
gcGasterosteus aculeatus 66_1
olOryzias latipes 66_1
tnTetraodon nigroviridis 66_8
toTakifugu rubripes 66_4
bfBranchiostoma floridae 1.0
w1Oikopleura dioica
c0Ciona savignyi 66_2
isCiona intestinalis 66_3
tuStrongylocentrotus purpuratus v3.1
hxHelobdella robusta
i1Capitella sp. I
DpDanaus plexippus OGS1.0
HmHeliconius melpomene
HnHeliconius numata
omBombyx mori
nzNasonia vitripennis
aiApis mellifera 38.2d
zgHarpegnathos saltator v3.3
zlLinepithema humile v1.1
znSolenopsis invicta v.2.2.3
zjPogonomyrmex barbatus v1.2
AeAcromyrmex echinatior v3.8
zbAtta cephalotes v1.1
zdCamponotus floridanus v3.3
gdDrosophila grimshawi 1.3
gwDrosophila willistoni 1.3
doDrosophila pseudoobscura 2.13
dqDrosophila persimilis 1.3
dyDrosophila yakuba 1.3
dwDrosophila simulans 1.3
dzDrosophila sechellia 1.3
ddDrosophila melanogaster 66_539
geDrosophila erecta 1.3
dkDrosophila ananassae 1.3
duDrosophila virilis 1.2
dxDrosophila mojavensis 1.3
axAedes aegypti 55
ieCulex pipiens quinquefasciatus
agAnopheles gambiae 49_3j
tjTribolium castaneum 3.0
hvPediculus humanus corporis
qpAcyrthosiphon pisum
d7Daphnia pulex
TuTetranychus urticae
iiIxodes scapularis
gyLottia gigantea
wpPristionchus pacificus
MIMeloidogyne incognita
MhMeloidogyne hapla
r0Brugia malayi WS218
wjCaenorhabditis japonica
wnCaenorhabditis brenneri
wrCaenorhabditis remanei
clCaenorhabditis elegans 66_220
cwCaenorhabditis briggsae 2
hzSchistosoma mansoni
APAcropora digitifera v1.0
nwNematostella vectensis 1.0
qmHydra magnipapillata
z4Amphimedon queenslandica
rqTrichoplax adhaerens
PRProterospongia sp. ATCC 50818
ovMonosiga brevicollis
SASphaeroforma arctica JP610
wzCapsaspora owczarzaki ATCC 30864
gzMalassezia globosa CBS 7966
umUstilago maydis
qnWallemia sebi v1.0
p4Puccinia graminis f. sp. tritici CRL 75-36-700-3
qlMelampsora laricis-populina
qbRhodotorula graminis WP1 v1.0
yuSporobolomyces roseus IAM 13481
SLSerpula lacrymans var. lacrymans S7.9
q1Coniophora puteana
orCoprinopsis cinerea okayama7 130 v3
POPleurotus ostreatus
loLaccaria bicolor S238N-H82
ABAgaricus bisporus var. bisporus
zcSchizophyllum commune
qiStereum hirsutum FP-91666 SS1 v1.0
qaHeterobasidion annosum
q6Gloeophyllum trabeumv1.0
q9Punctularia strigosozonata v1.0
fcPhanerochaete chrysosporium RP-78 2.1
q4Fomitiporia mediterranea v1.0
iaPostia placenta
qoWolfiporia cocos MD-104 SS10 v1.0
q5Fomitopsis pinicolav1.0
qjTrametes versicolor v1.0
q2Dichomitus squalens
lqTremella mesenterica
grMagnaporthe grisea 70-15
nqPodospora anserina
STSporotrichum thermophile ATCC 42464
TTThielavia terrestris NRRL 8126
hgChaetomium globosum CBS 148.51
n4Neurospora tetrasperma
n3Neurospora discreta FGSC 8579
nsNeurospora crassa OR74A
yhCryphonectria parasitica
vdVerticillium dahliae VdLs.17
veVerticillium albo-atrum VaMs.102
q0Acremonium alcalophilumv 1.0
foFusarium oxysporum f. sp. lycopersici 4286
nxNectria haematococca mpVI
fvFusarium verticillioides 7600
fgFusarium graminearum
wtTrichoderma atroviride
reTrichoderma reesei 1.2
njTrichoderma virens Gv29-8
b7Botrytis cinerea B05.10
lzSclerotinia sclerotiorum
l3Alternaria brassicicola
qgSetosphaeria turcica v1.0
t4Pyrenophora tritici-repentis
wcCochliobolus heterostrophus
ndStagonospora nodorum
yoMycosphaerella graminicola IPO323
qeSeptoria musiva v1.0
ymMycosphaerella fijiensis CIRAD86
q3Dothistroma septosporum
j2Ajellomyces dermatitidis SLH14081
hkHistoplasma capsulatum class NAmI strain WU24
qcMicrosporum canis CBS 113480
gpMicrosporum gypseum
ARArthroderma benhamiae CBS 112371
o7Trichophyton equinum CBS 127.97
TVTrichophyton verrucosum HKI 0517
TPTrichophyton tonsurans CBS 112818
TRTrichophyton rubrum CBS 118892
ivParacoccidioides brasiliensis Pb18
i6Coccidioides posadasii RMSCC 3488
imCoccidioides immitis RS
urUncinocarpus reesii 1704
nhNeosartorya fischeri NRRL 181
PCPenicillium chrysogenum Wisconsin 54-1255
PMPenicillium marneffei ATCC 18224
aoAspergillus fumigatus Af293
ACAspergillus carbonarius ITEM 5010
giAspergillus terreus NIH2624
a8Aspergillus oryzae RIB40
a5Aspergillus niger ATCC 1015
gqAspergillus flavus NRRL3357
a7Aspergillus clavatus NRRL 1
anAspergillus nidulans FGSC A4
TMTuber melanosporum Vittad
q8Pichia membranifaciensv1.0
ipPichia stipitis CBS 6054
ngCandida guilliermondii ATCC 6260
lyLodderomyces elongisporus NRRL YB-4239
dhDebaromyces hansenii
q7Hansenula polymorpha v2.0
CDCandida dubliniensis CD36
t3Candida tropicalis MYA-3404
ikCandida parapsilosis
alCandida albicans SC5314
zkWickerhamomyces anomalus
ylYarrowia lipolytica CLIB122
iuCandida lusitaniae ATCC 42720
PPPichia pastoris GS115
vwVanderwaltozyma polyspora DSM 70294
glCandida glabrata CBS138
yvKluyveromyces thermotolerans CBS 6340
y4Lachancea kluyveri
kwKluyveromyces waltii
goAshbya gossypii ATCC 10895
yzZygosaccharomyces rouxii
y6Saccharomyces mikatae MIT
y8Saccharomyces paradoxus MIT
xsSaccharomyces cerevisiae 66_4
y1Saccharomyces bayanus MIT
klKluyveromyces lactis
o9Schizosaccharomyces octosporus yFS286
hjSchizosaccharomyces japonicus yFS275
poSchizosaccharomyces pombe
AMAllomyces macrogynus ATCC 38327
MvMortierella verticillata NRRL 6337
ryRhizopus oryzae RA 99-880
hnPhycomyces blakesleeanus
ulMucor circinelloides
ziSpizellomyces punctatus DAOM BR117
dtDictyostelium discoideum
ydDictyostelium purpureum
EDEntamoeba dispar 1.2
EIEntamoeba invadens 1.2
enEntamoeba histolytica 1
EgEucalyptus grandis 6.0
z8Theobroma cacao Matina 1-6 v0.9
CcCitrus clementina 6.0
CsCitrus sinensis 6.0
l4Arabidopsis lyrata
atArabidopsis thaliana 10
r6Carica papaya
mwMedicago truncatula
ygGlycine max
CUCucumis sativus
w3Fragaria vesca
z5Malus x domestica
ptPopulus trichocarpa 6.0
vtVitis vinifera
z7Solanum lycopersicum v.2.3
pTSolanum tuberosum
AcAquilegia coerulea 6.0
BDBrachypodium distachyon
OgOryza glaberrima
osOryza sativa ssp. japonica 5.0
zeZea mays subsp. mays
ojSorghum bicolor
SiSetaria italica 6.0
gjSelaginella moellendorffii
pwPhyscomitrella patens subsp. patens
o8Ostreococcus sp. RCC809
ozOstreococcus lucimarinus CCE9901
ouOstreococcus tauri
BaBathycoccus
ijMicromonas sp. RCC299
iqMicromonas pusilla CCMP1545 v3.0
CXCoccomyxa sp. C-169
h2Chlorella sp. NC64A
vgChlorella vulgaris
voVolvox carteri f. nagariensis
cyChlamydomonas reinhardtii 4.0
yaCyanidioschyzon merolae
TtThecamonas trahens ATCC 50062
gfGiardia lamblia 2.3
TITrypanosoma vivax
uzTrypanosoma cruzi strain CL Brener
o6Trypanosoma congolense 2.4
tbTrypanosoma brucei
LMLeishmania mexicana 2.4
emLeishmania major strain Friedlin
lhLeishmania infantum JPCM5 2.4
ibLeishmania braziliensis MHOM/BR/75/M2904 2.4
EsEctocarpus siliculosus
a6Aureococcus anophagefferens
PuPythium ultimum v1.7-2
raPhytophthora ramorum 1.1
sjPhytophthora sojae 1.1
iyPhytophthora infestans T30-4
yyPhytophthora capsici
wfPhaeodactylum tricornutumCCAP 1055/1
waFragilariopsis cylindrus
wgThalassiosira pseudonana CCMP1335
irParamecium tetraurelia
hyTetrahymena thermophila SB210 1
o0Babesia bovis T2Bo
pvTheileria parva
nuTheileria annulata
plPlasmodium falciparum 3D7
vxPlasmodium vivax SaI-1 7.0
fwPlasmodium knowlesi strain H
pyPlasmodium yoelii ssp. yoelii 1
fyPlasmodium chabaudi
fbPlasmodium berghei ANKA
rmCryptosporidium hominis
ucCryptosporidium muris
cvCryptosporidium parvum Iowa II
unNeospora caninum
ueToxoplasma gondii ME49
ugToxoplasma gondii GT1
uvToxoplasma gondii VEG
ebNaegleria gruberi
txTrichomonas vaginalis
weEmiliania huxleyi CCMP1516
9yCandidatus Phytoplasma mali
ayAster yellows witches-broom phytoplasma AYWB
oyOnion yellows phytoplasma OY-M
8bAcholeplasma laidlawii PG-8A
mfMesoplasma florum L1
uuUreaplasma parvum ser. 3 ATCC 700970
kfUreaplasma urealyticum ser. 10 ATCC 33699
lIMycoplasma leachii PG50
miMycoplasma mycoides ssp. mycoides SC PG1
yiMycoplasma capricolum ssp. capricolum ATCC 27343
jYMycoplasma suis Illinois
dUMycoplasma suis KI3806
awMycoplasma crocodyli MP145
3OMycoplasma conjunctivae HRC/581
hWMycoplasma haemofelis Langford 1
jTMycoplasma bovis PG45
meMycoplasma penetrans HF-2
m0Mycoplasma mobile 163K
gLMycoplasma fermentans M64
kRMycoplasma fermentans JER
9wMycoplasma arthritidis 158L3-1
45Mycoplasma agalactiae PG2
7LMycoplasma agalactiae
ycMycoplasma synoviae 53
mqMycoplasma pulmonis UAB CTIP
mpMycoplasma pneumoniae M129
cOMycoplasma hyorhinis str. HUB-1
x9Mycoplasma hyopneumoniae 232
6HMycoplasma hominis
mgMycoplasma genitalium G37
myMycoplasma gallisepticum R(low)
7KAminobacterium colombiense DSM 12261
9CThermanaerovibrio acidaminovorans DSM 6589
hASpirochaeta sp. Buddy
bCBrachyspira murdochii DSM 12563
bHBrachyspira pilosicoli 95/1000
3JBrachyspira hyodysenteriae WA1
0kLeptospira borgpetersenii ser. Hardjo-bovis L550
lrLeptospira interrogans ser. Lai 56601
83Leptospira biflexa ser. Patoc Patoc 1 (Paris)
hFTreponema azotonutricium ZAS-9
czTreponema primitia ZAS-2
a4Treponema brennaborense DSM 12168
ePTreponema succinifaciens DSM 2489
tpTreponema pallidum ssp. pallidum Nichols
tdTreponema denticola ATCC 35405
fZSpirochaeta coccoides DSM 17374
cJSpirochaeta smaragdinae DSM 11293
iJSpirochaeta thermophila DSM 6192
gaBorrelia garinii PBi
04Borrelia afzelii PKo
bbBorrelia burgdorferi B31
g7Borrelia recurrentis A1
f7Borrelia duttonii Ly
9cBorrelia turicatae 91E135
9uBorrelia hermsii DAH
piRhodopirellula baltica SH 1
lAIsosphaera pallida ATCC 43644
aAPirellula staleyi DSM 6068
cBPlanctomyces limnophilus DSM 3776
gOPlanctomyces brasiliensis DSM 5305
7JGardnerella vaginalis 409-05
blBifidobacterium longum NCC2705
g5Bifidobacterium animalis ssp. lactis AD011
7QBifidobacterium dentium Bd1
dQBifidobacterium bifidum S17
jUBifidobacterium bifidum PRL2010
5gBifidobacterium adolescentis ATCC 15703
58Kineococcus radiotolerans SRS30216
4DCatenulispora acidiphila DSM 44928
9HStackebrandtia nassauensis DSM 44728
3qAcidothermus cellulolyticus 11B
2VNakamurella multipartita DSM 44233
7FGeodermatophilus obscurus DSM 43160
fkFrankia sp. CcI3
1bFrankia alni ACN14a
tfThermobifida fusca YX
dFNocardiopsis dassonvillei ssp. dassonvillei DSM 43111
6VThermomonospora curvata DSM 43183
8UStreptosporangium roseum DSM 43021
7nStreptomyces griseus ssp. griseus NBRC 13350
s9Streptomyces avermitilis MA-4680
7EStreptomyces scabiei 87.22
sfStreptomyces coelicolor
dDThermobispora bispora DSM 43833
1ZActinosynnema mirum DSM 43827
1QSaccharomonospora viridis DSM 43017
gIPseudonocardia dioxanivorans CB1190
18Saccharopolyspora erythraea NRRL 2338
cWAmycolatopsis mediterranei U32
7AKribbella flavida DSM 17836
0jNocardioides sp. JS614
acPropionibacterium acnes KPA171202
cNPropionibacterium freudenreichii ssp. shermanii CIRM-BIA1
61Salinispora arenicola CNS-205
1hSalinispora tropica CNB-440
lGVerrucosispora maris AB-18-032
iCMicromonospora sp. L5
aYMicromonospora aurantiaca ATCC 27029
dGSegniliparus rotundus DSM 44985
bMTsukamurella paurometabola DSM 20162
8GGordonia bronchialis DSM 43247
3rRhodococcus jostii RHA1
eLRhodococcus equi 103S
3ERhodococcus opacus B4
2TRhodococcus erythropolis PR4
nfNocardia farcinica IFM 10152
dTAmycolicicoccus subflavus DQS3-9A1
8cMycobacterium abscessus ATCC 19977
ybMycobacterium sp. MCS
avMycobacterium avium ssp. paratuberculosis K-10
28Mycobacterium vanbaalenii PYR-1
mbMycobacterium tuberculosis H37Rv
mcMycobacterium bovis AF2122/97
5oMycobacterium ulcerans Agy99
4hMycobacterium gilvum PYR-GCK
8uMycobacterium marinum M
3eMycobacterium smegmatis MC2 155
mlMycobacterium leprae TN
4ZCorynebacterium aurimucosum ATCC 700975
2HCorynebacterium kroppenstedtii DSM 44385
coCorynebacterium efficiens YS-314
7hCorynebacterium urealyticum DSM 7109
jkCorynebacterium jeikeium K411
bRCorynebacterium pseudotuberculosis FRC41
cdCorynebacterium diphtheriae NCTC 13129
twTropheryma whipplei Twist
aRSanguibacter keddieii DSM 10542
2GKytococcus sedentarius DSM 20547
5UBeutenbergia cavernae DSM 12333
lxLeifsonia xyli ssp. xyli CTCB07
jFMicrobacterium testaceum StLB037
32Clavibacter michiganensis ssp. michiganensis NCPPB 382
2XJonesia denitrificans DSM 20603
fDIntrasporangium calvum DSM 43043
3GBrachybacterium faecium DSM 4810
gRIsoptericola variabilis 225
7IXylanimonas cellulosilytica DSM 15894
cRCellulomonas flavigena DSM 20109
gGCellulomonas fimi ATCC 484
98Kocuria rhizophila DC2201
6QRothia mucilaginosa DY-18
idRothia dentocariosa ATCC 17931
jhArthrobacter phenanthrenivorans Sphe3
1fArthrobacter sp. FB24
gnArthrobacter arilaitensis Re117
6EArthrobacter chlorophenolicus A6
56Arthrobacter aurescens TC1
7fRenibacterium salmoninarum ATCC 33209
2QMicrococcus luteus NCTC 2665
bNMobiluncus curtisii ATCC 43063
bTArcanobacterium haemolyticum DSM 20595
AcfActinomyces sp. F0330
cYOlsenella uli DSM 7084
2UCryptobacterium curtum DSM 15641
1OEggerthella lenta DSM 2243
4CSlackia heliotrinireducens DSM 20476
jlCoriobacterium glomerans PW2
0RAtopobium parvulum DSM 20469
8NConexibacter woesei DSM 14684
rwRubrobacter xylanophilus DSM 9941
3DAcidimicrobium ferrooxidans DSM 10331
jADesulfurispirillum indicum S5
iICalditerrivibrio nitroreducens DSM 19672
8ODenitrovibrio acetiphilus DSM 12809
7NDeferribacter desulfuricans SSM1
2EKosmotoga olearia TBF 19.5.1
6yPetrotoga mobilis SJ95
3lFervidobacterium nodosum Rt17-B1
2yThermosipho melanesiensis BI429
jtThermosipho africanus TCF52B
5vThermotoga lettingae TMO
92Thermotoga sp. RQ2
9EThermotoga naphthophila RKU-10
0vThermotoga petrophila RKU-1
1JThermotoga neapolitana DSM 4359
tmThermotoga maritima MSB8
bGDehalogenimonas lykanthroporepellens BL-DC-9
dlDehalococcoides sp. CBDB1
etDehalococcoides ethenogenes 195
gBAnaerolinea thermophila UNI-1
4MThermomicrobium roseum DSM 5159
7ZSphaerobacter thermophilus DSM 20745
5uHerpetosiphon aurantiacus ATCC 23779
4aRoseiflexus sp. RS-1
77Roseiflexus castenholzii DSM 13941
2RChloroflexus sp. Y-400-fl
jbChloroflexus aggregans DSM 9485
6wChloroflexus aurantiacus J-10-fl
exThermovibrio ammonificans HB-1
frDesulfurobacterium thermolithotrophum DSM 11699
96Sulfurihydrogenibium sp. YO3AOP1
3ASulfurihydrogenibium azorense Az-Fu1
5NPersephonella marina EX-H1
e8Hydrogenobaculum sp. Y04AAS1
7OThermocrinis albus DSM 14484
aaAquifex aeolicus VF5
9LHydrogenobacter thermophilus TK-6
6BGemmatimonas aurantiaca T-27
8TFibrobacter succinogenes ssp. succinogenes S85
a3Candidatus Koribacter versatilis Ellin345
25Candidatus Solibacter usitatus Ellin6076
kDTerriglobus saanensis SP1PR4
eDAcidobacterium sp. MP5ACTX9
2LAcidobacterium capsulatum ATCC 51196
94Elusimicrobium minutum Pei191
k6uncultured Termite group 1 bacterium phylotype Rs-D17
9sPelodictyon phaeoclathratiforme BU-1
p7Chlorobium luteolum DSM 273
c5Chlorobium chlorochromatii CaD3
3vChlorobium phaeobacteroides DSM 266
1xChlorobium phaeovibrioides DSM 265
fpChlorobium limicola DSM 245
evChlorobaculum parvum NCIB 8327
chChlorobium tepidum TLS
9oChloroherpeton thalassium ATCC 35110
edProsthecochloris aestuarii DSM 271
8JSalinibacter ruber
aDRhodothermus marinus DSM 4252
dnMarivirga tractuosa DSM 4126
jVLeadbetterella byssophila DSM 17132
2DDyadobacter fermentans DSM 18053
37Cytophaga hutchinsonii ATCC 33406
7PSpirosoma linguale DSM 74
h8Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
bJPrevotella melaninogenica ATCC 25845
fIPrevotella denticola F0289
7YPrevotella ruminicola 23
0gParabacteroides distasonis ATCC 8503
jPPaludibacter propionicigenes WB4
iOOdoribacter splanchnicus DSM 20712
kTPorphyromonas asaccharolytica DSM 20707
pgPorphyromonas gingivalis W83
eSBacteroides salanitronis DSM 18170
jLBacteroides helcogenes P 36-108
0rBacteroides vulgatus ATCC 8482
btBacteroides thetaiotaomicron VPI-5482
flBacteroides fragilis NCTC 9343
f6Candidatus Amoebophilus asiaticus 5a2
5YChitinophaga pinensis DSM 2588
eUHaliscomenobacter hydrossis DSM 1100
iRPedobacter saltans DSM 12145
3YPedobacter heparinus DSM 2366
kNSphingobacterium sp. 21
64Candidatus Sulcia muelleri GWSS
kUFluviicola taffensis DSM 16823
9XZunongwangia profunda SM-A87
jIKrokinobacter sp. 4H-3-7-5
1sGramella forsetii KT0803
kSMaribacter sp. HTCC2170
6MRobiginitalea biformata HTCC2501
cQCroceibacter atlanticus HTCC2559
l6Cellulophaga algicola DSM 14237
kCCellulophaga lytica DSM 7489
4VFlavobacteriaceae bacterium 3519-10
hURiemerella anatipestifer DSM 15868
1MCapnocytophaga ochracea DSM 7271
kXWeeksella virosa DSM 16922
5dFlavobacterium psychrophilum JIP02/86
1zFlavobacterium johnsoniae UW101
6XBlattabacterium sp. Bge
ixDictyoglomus turgidum DSM 6724
k3Dictyoglomus thermophilum H-6-12
dNWaddlia chondrophila WSU 86-1044
p0Candidatus Protochlamydia amoebophila UWE25
c1Chlamydophila caviae GPIC
c6Chlamydophila felis Fe/C-56
c4Chlamydophila abortus S26/3
hDChlamydophila pecorum E58
cmChlamydia muridarum Nigg
c2Chlamydophila pneumoniae TW-183
jKChlamydophila psittaci 6BC
ctChlamydia trachomatis D/UW-3/CX
6LCoraliomargarita akajimensis DSM 45221
8iOpitutus terrae PB90-1
9hMethylacidiphilum infernorum V4
9aAkkermansia muciniphila ATCC BAA-835
k7Thermodesulfovibrio yellowstonii DSM 11347
cSCandidatus Nitrospira defluvii
7GStreptobacillus moniliformis DSM 12112
8PSebaldella termitidis ATCC 33386
0MLeptotrichia buccalis C-1013-b
hVIlyobacter polytropus DSM 2926
fnFusobacterium nucleatum ssp. nucleatum ATCC 25586
dRCandidatus Cloacamonas acidaminovorans
8EThermobaculum terrenum ATCC BAA-798
dcTruepera radiovictrix DSM 17093
1BDeinococcus deserti VCD115
iLDeinococcus maricopensis DSM 21211
d4Deinococcus geothermalis DSM 11300
jCDeinococcus proteolyticus MRP
drDeinococcus radiodurans R1
fEOceanithermus profundus DSM 14977
gPMarinithermus hydrothermalis DSM 14884
dAMeiothermus silvanus DSM 9946
aLMeiothermus ruber DSM 1279
l8Thermus scotoductus SA-01
t0Thermus thermophilus HB27
8KAcidaminococcus fermentans DSM 20731
8LVeillonella parvula DSM 2008
dSSelenomonas sputigena ATCC 35185
eVErysipelothrix rhusiopathiae Fujisawa
j0Natranaerobius thermophilus JW/NM-WN-LF
jQEthanoligenens harbinense YUAN-3
fFRuminococcus albus 7
sbSymbiobacterium thermophilum IAM 14863
1HAnaerococcus prevotii DSM 20548
8gFinegoldia magna ATCC 29328
gZThermaerobacter marianensis DSM 12885
9ZClostridiales genomosp. BVAB3 UPII9-5
7uCandidatus Desulforudis audaxviator MP104C
bFThermincola potens JR
09Pelotomaculum thermopropionicum SI
kKSyntrophobotulus glycolicus DSM 8271
d2Desulfitobacterium hafniense Y51
jEDesulfotomaculum carboxydivorans CO-1-SRB
0cDesulfotomaculum reducens MI-1
2PDesulfotomaculum acetoxidans DSM 771
4QDesulfotomaculum kuznetsovii DSM 6115
eBDesulfotomaculum ruminis DSM 2154
4PEubacterium rectale ATCC 33656
3NEubacterium eligens ATCC 27750
iXEubacterium limosum KIST612
eOClostridium sticklandii DSM 519
3xClostridium difficile 630
hEClostridium lentocellum DSM 5427
dBButyrivibrio proteoclasticus B316
bUSyntrophothermus lipocalidus DSM 12680
2lSyntrophomonas wolfei ssp. wolfei Goettingen
8jHeliobacterium modesticaldum Ice1
68Alkaliphilus oremlandii OhILAs
0nAlkaliphilus metalliredigens QYMF
d3Clostridium saccharolyticum WM1
5zClostridium phytofermentans ISDg
12Clostridium novyi NT
cFClostridium ljungdahlii
16Clostridium kluyveri DSM 555
0ZClostridium cellulolyticum H10
03Clostridium beijerinckii NCIMB 8052
4xClostridium thermocellum ATCC 27405
teClostridium tetani E88
cuClostridium perfringens 13
aVClostridium cellulovorans 743B
0iClostridium botulinum A ATCC 3502
caClostridium acetobutylicum ATCC 824
ahMahella australiensis 50-1 BON
cZThermosediminibacter oceani DSM 16646
bVCaldicellulosiruptor obsidiansis OB47
fACaldicellulosiruptor kronotskyensis 2002
iHCaldicellulosiruptor hydrothermalis 108
eJCaldicellulosiruptor owensensis OL
hNCaldicellulosiruptor kristjanssonii 177R1B
1qCaldicellulosiruptor saccharolyticus DSM 8903
5EAnaerocellum thermophilum DSM 6725
gUThermoanaerobacterium xylanolyticum LX-11
cLThermoanaerobacterium thermosaccharolyticum DSM 571
kcThermodesulfobium narugense DSM 14796
h3Coprothermobacter proteolyticus DSM 5265
eATepidanaerobacter sp. Re1
ttThermoanaerobacter tengcongensis MB4
c9Carboxydothermus hydrogenoformans Z-2901
m8Moorella thermoacetica ATCC 39073
a1Ammonifex degensii KC4
aXThermoanaerobacter mathranii ssp. mathranii A3
82Thermoanaerobacter pseudethanolicus ATCC 33223
8dThermoanaerobacter sp. X514
6OThermoanaerobacter italicus Ab9
fJThermoanaerobacter brockii ssp. finnii Ako-1
cDAcetohalobium arabaticum DSM 5501
5DHalothermothrix orenii H 168
hMHalanaerobium sp. sapolanicus
jSCarnobacterium sp. 17-4
kJAerococcus urinae ACS-120-V-Col10a
lLMelissococcus plutonius ATCC 35311
efEnterococcus faecalis V583
4mOenococcus oeni PSU-1
cKLeuconostoc kimchii IMSNU 11154
cULeuconostoc gasicomitatum LMG 18811
7xLeuconostoc citreum KM20
2sLeuconostoc mesenteroides ssp. mesenteroides ATCC 8293
bPLactobacillus casei Zhang
1oLactobacillus casei ATCC 334
fXLactobacillus kefiranofaciens ZW3
8ZLactobacillus crispatus ST1
0FLactobacillus rhamnosus GG
ljLactobacillus johnsonii NCC 533
lvLactobacillus salivarius UCC118
9bLactobacillus fermentum IFO 3956
iKLactobacillus amylovorus GRL 1112
lsLactobacillus sakei ssp. sakei 23K
49Lactobacillus reuteri DSM 20016
13Lactobacillus gasseri ATCC 33323
lbLactobacillus plantarum WCFS1
79Lactobacillus helveticus DPC 4571
ldLactobacillus delbrueckii ssp. bulgaricus ATCC 11842
gKLactobacillus buchneri NRRL B-30929
52Lactobacillus brevis ATCC 367
ltLactobacillus acidophilus NCFM
0dPediococcus pentosaceus ATCC 25745
llLactococcus lactis ssp. lactis Il1403
7DStreptococcus gallolyticus UCN34
lBStreptococcus pasteurianus ATCC 43144
4JStreptococcus dysgalactiae ssp. equisimilis GGS_124
aPStreptococcus mitis B6
5HStreptococcus uberis 0140J
kFStreptococcus parauberis KCTC 11537
x2Streptococcus pyogenes M1 GAS
aWStreptococcus pneumoniae TCH8431/19A
srStreptococcus pneumoniae TIGR4
s5Streptococcus agalactiae NEM316
s6Streptococcus mutans UA159
sdStreptococcus thermophilus LMG 18311
4rStreptococcus suis 05ZYH33
5bStreptococcus sanguinis SK36
adStreptococcus oralis Uo5
6sStreptococcus gordonii Challis subCH1
0HExiguobacterium sp. AT1b
7rExiguobacterium sibiricum 255-15
8DBacillus tusciae DSM 2912
4AAlicyclobacillus acidocaldarius ssp. acidocaldarius DSM 446
2FBrevibacillus brevis NBRC 100599
3HPaenibacillus sp. JDR-2
iDPaenibacillus polymyxa SC2
kVPaenibacillus polymyxa E681
2gListeria welshimeri ser. 6b SLCC5334
liListeria innocua Clip11262
6WListeria seeligeri ser. 1/2b SLCC3954
lmListeria monocytogenes EGD-e
7zLysinibacillus sphaericus C3-41
oiOceanobacillus iheyensis HTE831
j6Anoxybacillus flavithermus WK1
cCGeobacillus sp. C56-T3
1LGeobacillus sp. WCH70
1uGeobacillus thermodenitrificans NG80-2
gkGeobacillus kaustophilus HTA426
gDBacillus atrophaeus 1942
bsBacillus subtilis ssp. subtilis 168
lfBacillus licheniformis ATCC 14580
2oBacillus amyloliquefaciens FZB42
bhBacillus halodurans C-125
62Bacillus weihenstephanensis KBAB4
koBacillus thuringiensis ser. konkukian 97-27
cIBacillus thuringiensis BMB171
cPBacillus cereus biov. anthracis CI
bcBacillus cereus ATCC 14579
cGBacillus selenitireducens MLS10
aNBacillus pseudofirmus OF4
x4Bacillus clausii KSM-K16
jZBacillus cellulosilyticus DSM 2522
6fBacillus pumilus SAFR-032
aOBacillus megaterium QM B1551
1VMacrococcus caseolyticus JCSC5402
gXStaphylococcus pseudintermedius HKU10-03
ztStaphylococcus saprophyticus ssp. saprophyticus ATCC 15305
6TStaphylococcus lugdunensis HKU09-01
zhStaphylococcus haemolyticus JCSC1435
epStaphylococcus epidermidis RP62A
5SStaphylococcus carnosus ssp. carnosus TM300
aqStaphylococcus aureus ssp. aureus NCTC 8325
6CNautilia profundicola AmH
aBSulfurospirillum deleyianum DSM 6946
dHArcobacter nitrofigilis DSM 7299
6kArcobacter butzleri RM4018
00Campylobacter hominis ATCC BAA-381
4ICampylobacter lari RM2100
3yCampylobacter curvus 525.92
6xCampylobacter concisus 13826
cjCampylobacter jejuni ssp. jejuni NCTC 11168
35Campylobacter fetus ssp. fetus 82-40
eESulfuricurvum kujiense DSM 16994
lHSulfurimonas autotrophica DSM 16294
tiSulfurimonas denitrificans DSM 1251
wsWolinella succinogenes DSM 1740
hhHelicobacter hepaticus ATCC 51449
9THelicobacter mustelae 12198
jJHelicobacter felis ATCC 49179
hlHelicobacter acinonychis Sheeba
ciHelicobacter pylori B8
hpHelicobacter pylori 26695
gHNitratifractor salsuginis DSM 16511
1dNitratiruptor sp. SB155-2
1tSulfurovum sp. NBC37-1
dIDesulfarculus baarsii DSM 2075
bdBdellovibrio bacteriovorus HD100
iYDesulfobacca acetoxidans DSM 11109
ytSyntrophus aciditrophicus SB
0lSyntrophobacter fumaroxidans MPOB
cMDesulfurivibrio alkaliphilus AHT2
dpDesulfotalea psychrophila LSv54
iUDesulfobulbus propionicus DSM 2032
9lDesulfatibacillum alkenivorans AK-01
3WDesulfobacterium autotrophicum HRM2
2KDesulfohalobium retbaense DSM 5692
6DDesulfomicrobium baculatum DSM 4028
lnLawsonia intracellularis PHE/MN1-00
5KDesulfovibrio magneticus RS-1
hODesulfovibrio aespoeensis Aspo-2
dsDesulfovibrio desulfuricans ssp. desulfuricans G20
dvDesulfovibrio vulgaris Hildenborough
3FDesulfovibrio salexigens DSM 2638
f3Hippea maritima DSM 10411
3cPelobacter propionicus DSM 2379
p8Pelobacter carbinolicus DSM 2380
3gGeobacter uraniireducens Rf4
5ZGeobacter sp. FRC-32
9zGeobacter lovleyi SZ
jwGeobacter bemidjiensis Bem
gsGeobacter sulfurreducens PCA
gmGeobacter metallireducens GS-15
aEHaliangium ochraceum DSM 14365
60Sorangium cellulosum So ce 56
jXStigmatella aurantiaca DW4/3-1
55Anaeromyxobacter sp. Fw109-5
aeAnaeromyxobacter dehalogenans 2CP-C
m1Myxococcus xanthus DK 1622
53Magnetococcus sp. MC-1
8BSideroxydans lithotrophicus ES-1
bDGallionella capsiferriformans ES-2
azAromatoleum aromaticum EbN1
djDechloromonas aromatica RCB
5AThauera sp. MZ1T
0NLaribacter hongkongensis HLHK9
viChromobacterium violaceum ATCC 12472
nnNeisseria meningitidis Z2491
hLNeisseria lactamica 020-06
niNeisseria gonorrhoeae FA 1090
bBMethylotenera sp. 301
1WMethylotenera mobilis JLW8
4RMethylovorus sp. SIP3-4
m7Methylobacillus flagellatus KT
ntThiobacillus denitrificans ATCC 25259
0ECandidatus Accumulibacter phosphatis clade IIA UW-1
14Methylibium petroleiphilum PM1
bSThiomonas intermedia K12
7iLeptothrix cholodnii SP-6
rlRalstonia eutropha JMP134
9xCupriavidus taiwanensis
r4Cupriavidus metallidurans CH34
kqRalstonia pickettii 12J
dKRalstonia solanacearum PSI07
bYRalstonia solanacearum CFBP2957
rsRalstonia solanacearum GMI1000
0sPolynucleobacter necessarius ssp. asymbioticus QLW-P1DMWA-1
eKBurkholderia rhizoxinica HKI 454
kuBurkholderia phytofirmans PsJN
90Burkholderia phymatum STM815
b5Burkholderia thailandensis E264
peBurkholderia pseudomallei K96243
biBurkholderia mallei ATCC 23344
bkBurkholderia sp. 383
0uBurkholderia ambifaria AMMD
b6Burkholderia cenocepacia AU 1054
76Burkholderia multivorans ATCC 17616
30Burkholderia vietnamiensis G4
b4Burkholderia xenovorans LB400
eMBurkholderia gladioli BSR3
2YBurkholderia glumae BGR1
rxRhodoferax ferrireducens T118
4bVerminephrobacter eiseniae EF01-2
iVAlicycliphilus denitrificans K601
iZAlicycliphilus denitrificans BC
eIDelftia sp. Cs1-4
7dDelftia acidovorans SPH-1
p6Polaromonas sp. JS666
01Polaromonas naphthalenivorans CJ2
2BVariovorax paradoxus S110
0UAcidovorax ebreus TPSY
43Acidovorax sp. JS42
4tAcidovorax citrulli AAC00-1
f5Acidovorax avenae ssp. avenae ATCC 19860
dWCandidatus Zinderia insecticola CARI
5eHerminiimonas arsenicoxydans
4dJanthinobacterium sp. Marseille
bIHerbaspirillum seropedicae SmR1
gNPusillimonas sp. T7-7
kGTaylorella equigenitalis MCE9
5yBordetella petrii DSM 12804
9kBordetella avium 197N
beBordetella pertussis Tohama I
bpBordetella parapertussis 12822
boBordetella bronchiseptica RB50
dYAchromobacter xylosoxidans A8
nlNitrosospira multiformis ATCC 25196
fBNitrosomonas sp. AL212
3jNitrosomonas eutropha C91
neNitrosomonas europaea ATCC 19718
bAParvularcula bermudensis HTCC2503
hCAsticcacaulis excentricus CB 48
dCBrevundimonas subvibrioides ATCC 15264
7oCaulobacter sp. K31
8ACaulobacter segnis ATCC 21756
kkPhenylobacterium zucineum HLK1
eyErythrobacter litoralis HTCC2594
akSphingopyxis alaskensis RB2256
fUNovosphingobium sp. PP1Y
nvNovosphingobium aromaticivorans DSM 12444
9tSphingobium japonicum UT26S
g4Sphingobium chlorophenolicum L-1
2iSphingomonas wittichii RW1
zmZymomonas mobilis ssp. mobilis ZM4
2xMaricaulis maris MCS10
5WHirschia baltica ATCC 49814
54Hyphomonas neptunium ATCC 15444
6qDinoroseobacter shibae DFL 12
jaJannaschia sp. CCS1
icRuegeria sp. TM1040
sgRuegeria pomeroyi DSS-3
iBKetogulonicigenium vulgare Y25
2rRoseobacter denitrificans OCh 114
rhRhodobacter sphaeroides 2.4.1
6NRhodobacter capsulatus SB 1003
27Paracoccus denitrificans PD1222
m5Magnetospirillum magneticum AMB-1
kgRhodospirillum centenum SW
rbRhodospirillum rubrum ATCC 11170
9RAzospirillum sp. B510
3mGranulibacter bethesdensis CGDNIH1
7cGluconacetobacter diazotrophicus PAl 5
lKAcidiphilium multivorum AIU301
hTAcidiphilium cryptum JF-5
oxGluconobacter oxydans 621H
1SAcetobacter pasteurianus IFO 3283-01
fQPolymorphum gilvum SL003B-26A1
9WCandidatus Puniceispirillum marinum IMCC1322
jHCandidatus Pelagibacter sp. IMCC9063
ubCandidatus Pelagibacter ubique HTCC1062
ncNeorickettsia sennetsu Miyayama
0TNeorickettsia risticii Illinois
9qWolbachia endosymbiont of Culex_quinquefasciatus Pel
woWolbachia endosymbiont of Drosophila melanogaster
wlWolbachia endosymbiont TRS of Brugia malayi
5TWolbachia sp. wRi
egEhrlichia chaffeensis Arkansas
elEhrlichia canis Jake
asAnaplasma phagocytophilum HZ
amAnaplasma marginale St. Maries
9DAnaplasma centrale Israel
2qOrientia tsutsugamushi Boryong
r3Rickettsia bellii RML369-C
6hRickettsia canadensis McKiel
rtRickettsia typhi Wilmington
rpRickettsia prowazekii Madrid E
0WRickettsia peacockii Rustic
rfRickettsia felis URRWXCal2
6aRickettsia massiliae MTU5
2CRickettsia africae ESF-5
74Rickettsia akari Hartford
6bRickettsia rickettsii Sheila Smith
rcRickettsia conorii Malish 7
cVStarkeya novella DSM 506
2dXanthobacter autotrophicus Py2
75Azorhizobium caulinodans ORS 571
j5Methylobacterium chloromethanicum CM4
6rMethylobacterium extorquens PA1
7sMethylobacterium sp. 4-46
fjMethylobacterium populi BJ001
6GMethylobacterium nodulans ORS 2060
7wMethylobacterium radiotolerans JCM 2831
1KCandidatus Hodgkinia cicadicola Dsem
40Ochrobactrum anthropi ATCC 49188
1YBrucella microti CCM 4915
6zBrucella canis ATCC 23365
brBrucella suis 1330
bmBrucella melitensis bv. 1 16M
1kBrucella ovis ATCC 25840
b3Brucella abortus bv. 1 9-941
1TRhizobium sp. NGR234
2mSinorhizobium medicae WSM419
smSinorhizobium meliloti 1021
rzRhizobium etli CFN 42
17Rhizobium leguminosarum bv. viciae 3841
kWAgrobacterium sp. H13-3
5CAgrobacterium vitis S4
0YAgrobacterium radiobacter K84
auAgrobacterium tumefaciens C58
3ZCandidatus Liberibacter asiaticus psy62
0pChelativorans sp. BNC1
1eParvibaculum lavamentivorans DS-1
iAMesorhizobium ciceri biov. biserrulae WSM1271
mkMesorhizobium loti MAFF303099
keMethylocella silvestris BL2
8qBeijerinckia indica ssp. indica ATCC 9039
fCRhodomicrobium vannielii ATCC 17100
bZHyphomicrobium denitrificans ATCC 51888
jjOligotropha carboxidovorans OM5
rdRhodopseudomonas palustris CGA009
wiNitrobacter winogradskyi Nb-255
nbNitrobacter hamburgensis X14
26Bradyrhizobium sp. ORS278
bjBradyrhizobium japonicum USDA 110
6uBartonella tribocorum CIP 105476
gMBartonella clarridgeiae 73
hoBartonella henselae Houston-1
4KBartonella grahamii as4aup
bqBartonella quintana Toulouse
4cBartonella bacilliformis KC583
kjAcidithiobacillus ferrooxidans ATCC 23270
m3Mannheimia succiniciproducens MBEL55E
3LAggregatibacter aphrophilus NJ8700
7SAggregatibacter actinomycetemcomitans D11S-1
5qHaemophilus somnus 129PT
dPGallibacterium anatis UMN179
pmPasteurella multocida ssp. multocida Pm70
kmHaemophilus parasuis SH0165
hdHaemophilus ducreyi 35000HP
hiHaemophilus influenzae Rd KW20
4kActinobacillus succinogenes 130Z
1cActinobacillus pleuropneumoniae L20
3MTolumonas auensis DSM 9187
iQAeromonas veronii B565
44Aeromonas salmonicida ssp. salmonicida A449
33Aeromonas hydrophila ssp. hydrophila ATCC 7966
k1Aliivibrio salmonicida LFI1238
vfVibrio fischeri ES114
vpVibrio parahaemolyticus RIMD 2210633
65Vibrio harveyi ATCC BAA-1116
8WVibrio sp. Ex25
knVibrio splendidus LGP32
vbVibrio vulnificus YJ016
vcVibrio cholerae O1 biov. El Tor N16961
hePhotobacterium profundum SS9
0xPsychromonas ingrahamii 37
ilIdiomarina loihiensis L2TR
eYFerrimonas balearica DSM 9799
h5Shewanella piezotolerans WP3
1rShewanella loihica PV-4
8lShewanella halifaxensis HAW-EB4
6dShewanella sediminis HAW-EB3
hwShewanella denitrificans OS217
6tShewanella pealeana ATCC 700345
slShewanella oneidensis MR-1
2zShewanella baltica OS155
88Shewanella woodyi ATCC 51908
24Shewanella sp. MR-7
2pShewanella amazonensis SB2B
7HShewanella violacea DSS12
3wShewanella frigidimarina NCIMB 400
2aShewanella putrefaciens CN-32
lwColwellia psychrerythraea 34H
eXPseudoalteromonas sp. SM9913
pxPseudoalteromonas atlantica T6c
haPseudoalteromonas haloplanktis TAC125
2OTeredinibacter turnerae T7901
d0Saccharophagus degradans 2-40
fVGlaciecola sp. 4H-3-7+YE-5
1nMarinobacter aquaeolei VT8
kMAlteromonas sp. SN2
kbAlteromonas macleodii Deep ecotype
hcHahella chejuensis KCTC 2396
4HKangiella koreensis DSM 16069
2bAlcanivorax borkumensis SK2
fLMarinomonas posidonica IVIA-Po-181
0zMarinomonas sp. MWYL1
kPMarinomonas mediterranea MMB-1
c8Chromohalobacter salexigens DSM 3043
hRHalomonas elongata DSM 2581
gVMethylomonas methanica MC09
mtMethylococcus capsulatus Bath
3iDichelobacter nodosus VCS1703A
gCPseudoxanthomonas suwonensis 11-1
e9Stenotrophomonas maltophilia R551-3
xfXylella fastidiosa 9a5c
xcXanthomonas axonopodis pv. citri 306
6RXanthomonas albilineans
xoXanthomonas oryzae pv. oryzae KACC10331
xdXanthomonas campestris pv. campestris ATCC 33913
8RHalothiobacillus neapolitanus c2
5rAlkalilimnicola ehrlichii MLHE-1
4SThioalkalivibrio sp. HL-EbGR7
3bHalorhodospira halophila SL1
9GAllochromatium vinosum DSM 180
dENitrosococcus watsoni C-113
aJNitrosococcus halophilus Nc4
nrNitrosococcus oceani ATCC 19707
cxCoxiella burnetii RSA 493
8QLegionella longbeachae NSW150
x7Legionella pneumophila ssp. pneumophila Philadelphia 1
cHLegionella pneumophila 2300/99 Alcoy
b1Baumannia cicadellinicola Hc
5sCandidatus Carsonella ruddii PV
bOgamma proteobacterium HdN1
5iCandidatus Vesicomyosocius okutanii HA
5fCandidatus Ruthia magnifica Cm
6ZCronobacter turicensis z3032
9UCandidatus Riesia pediculicola USDA
3IDickeya zeae Ech1591
5JDickeya dadantii Ech703
2SCandidatus Hamiltonella defensa 5AT
ckCandidatus Blochmannia floridanus
7MPectobacterium wasabiae WPP163
erPectobacterium atrosepticum SCRI1043
1APectobacterium carotovorum ssp. carotovorum PC1
ogSodalis glossinidius morsitans
eGPantoea sp. At-9b
eTPantoea vagans C9-1
9YPantoea ananatis LMG 20103
wbWigglesworthia glossinidia
iTRahnella sp. Y9602
3KPhotorhabdus asymbiotica
pdPhotorhabdus luminescens ssp. laumondii TTO1
0OEdwardsiella ictaluri 93-146
8MEdwardsiella tarda EIB202
yrYersinia pseudotuberculosis IP 32953
ypYersinia pestis CO92
1gYersinia enterocolitica ssp. enterocolitica 8081
7BXenorhabdus bovienii SS-2004
bQXenorhabdus nematophila ATCC 19061
onShigella sonnei Ss046
fsShigella flexneri 2a 2457T
d1Shigella dysenteriae Sd197
sqShigella boydii Sb227
hGSerratia sp. AS12
hrSerratia sp. AS9
7eSerratia proteamaculans 568
jnProteus mirabilis HI4320
8VKlebsiella variicola At-22
2kKlebsiella pneumoniae ssp. pneumoniae MGH 78578
kdEscherichia fergusonii ATCC 35469
ecEscherichia coli K-12 subMG1655
ejErwinia tasmaniensis Et1/99
dJErwinia billingiae Eb661
7RErwinia pyrifoliae Ep1/96
8HErwinia amylovora ATCC 49946
08Enterobacter sp. 638
bXEnterobacter cloacae ssp. cloacae ATCC 13047
8YCitrobacter rodentium ICC168
5xCitrobacter koseri ATCC BAA-895
4WAzotobacter vinelandii DJ
hQPseudomonas brassicacearum ssp. brassicacearum NFM421
pqPseudomonas entomophila L48
pjPseudomonas syringae pv. tomato DC3000
2ePseudomonas stutzeri A1501
fPPseudomonas fulva 12-X
psPseudomonas putida KT2440
qfPseudomonas fluorescens Pf-5
4yPseudomonas mendocina ymp
paPseudomonas aeruginosa PAO1
9mCellvibrio japonicus Ueda107
1vPsychrobacter sp. PRwf-1
riPsychrobacter arcticus 273-4
pzPsychrobacter cryohalolentis K5
dLMoraxella catarrhalis RH4
aUAcinetobacter sp. DR1
1lAcinetobacter baumannii ATCC 17978
abAcinetobacter sp. ADP1
fOThioalkalimicrobium cyclicum ALM1
tcThiomicrospira crunogena XCL-2
8pFrancisella philomiragia ssp. philomiragia ATCC 25017
gvGloeobacter violaceus PCC 7421
p1Prochlorococcus marinus MIT 9313
dMNostoc azollae 0708
9jNostoc punctiforme PCC 73102
noNostoc sp. PCC 7120
vaAnabaena variabilis ATCC 29413
4iTrichodesmium erythraeum IMS101
81Acaryochloris marina MBIC11017
thThermosynechococcus elongatus BP-1
aKcyanobacterium UCYN-A
8tCyanothece sp. ATCC 51142
csSynechocystis sp. PCC 6803
x3Synechococcus elongatus PCC 6301
84Microcystis aeruginosa NIES-843
kYCenarchaeum symbiosum A
6eNitrosopumilus maritimus SCM1
naNanoarchaeum equitans Kin4-M
7vCandidatus Korarchaeum cryptofilum OPF8
6JMethanocella paludicola SANAE
11Methanosaeta thermophila PT
hPMethanosaeta concilii GP-6
bEMethanohalobium evestigatum Z-7303
m9Methanococcoides burtonii DSM 6242
maMethanosarcina acetivorans C2A
mzMethanosarcina mazei Go1
fuMethanosarcina barkeri Fusaro
aHMethanohalophilus mahii DSM 5219
jxMethanosphaerula palustris E1-9c
3pCandidatus Methanoregula boonei 6A8
m6Methanospirillum hungatei JF-1
4lMethanocorpusculum labreanum Z
23Methanoculleus marisnigri JR1
jGMethanoplanus petrolearius DSM 11571
mnMethanopyrus kandleri AV19
aQFerroglobus placidus DSM 10642
7WArchaeoglobus profundus DSM 5631
fSArchaeoglobus veneficus SNP6
afArchaeoglobus fulgidus DSM 4304
h6Thermococcus onnurineus NA1
tkThermococcus kodakarensis KOD1
5VThermococcus gammatolerans EJ3
0XThermococcus sibiricus MM 739
eZThermococcus barophilus MP
iFPyrococcus sp. NA2
phPyrococcus horikoshii OT3
pbPyrococcus abyssi GE5
puPyrococcus furiosus DSM 3638
tvThermoplasma volcanium GSS1
taThermoplasma acidophilum DSM 1728
p3Picrophilus torridus DSM 9790
bWHalalkalicoccus jeotgali B3
1wHaloquadratum walsbyi DSM 16790
4XHalomicrobium mukohataei DSM 12286
3RHalorhabdus utahensis DSM 12940
9PHaloterrigena turkmenica DSM 5511
npNatronomonas pharaonis DSM 2160
aMNatrialba magadii ATCC 43099
l9Halogeometricum borinquense DSM 11551
4BHalorubrum lacusprofundi ATCC 49239
aGHaloferax volcanii DS2
8mHalobacterium salinarum R1
hbHalobacterium sp. NRC-1
hmHaloarcula marismortui ATCC 43049
kOMethanotorris igneus Kol 5
6SMethanocaldococcus sp. FS406-22
3PMethanocaldococcus fervens AG86
aCMethanocaldococcus vulcanius M7
cXMethanocaldococcus infernus ME
mjMethanocaldococcus jannaschii DSM 2661
4vMethanococcus aeolicus Nankai-3
m2Methanococcus maripaludis S2
cTMethanococcus voltae A3
57Methanococcus vannielii SB
eCMethanothermus fervidus DSM 2088
cAMethanothermobacter marburgensis Marburg
mdMethanothermobacter thermautotrophicus Delta H
m4Methanosphaera stadtmanae DSM 3091
9QMethanobrevibacter ruminantium M1
1pMethanobrevibacter smithii ATCC 35061
iWMethanobacterium sp. AL-21
jOMethanobacterium sp. SWAN-1
3nuncultured methanogenic archaeon RC-I
9OAciduliprofundum boonei T469
aZAcidilobus saccharovorans 345-15
5mHyperthermus butylicus DSM 5456
hBIgnisphaera aggregans DSM 17230
apAeropyrum pernix K1
63Ignicoccus hospitalis KIN4/I
bKThermosphaera aggregans DSM 11486
cEStaphylothermus hellenicus DSM 12710
0eStaphylothermus marinus F1
fdDesulfurococcus kamchatkensis 1221n
fHDesulfurococcus mucosus DSM 2162
lCMetallosphaera cuprina Ar-4
02Metallosphaera sedula DSM 5348
jmAcidianus hospitalis W1
svSulfolobus tokodaii 7
0GSulfolobus islandicus Y.N.15.51
ssSulfolobus solfataricus P2
zaSulfolobus acidocaldarius DSM 639
2vThermofilum pendens Hrk 5
hZVulcanisaeta moutnovskia 768-28
jBVulcanisaeta distributa DSM 14429
6nCaldivirga maquilingensis IC-167
4uPyrobaculum calidifontis JCM 11548
5aPyrobaculum arsenaticum DSM 13514
pcPyrobaculum aerophilum IM2
34Pyrobaculum islandicum DSM 4184
kzThermoproteus uzoniensis 768-20
8hThermoproteus neutrophilus V24Sta
Table contains 1273 items

Jump to [ Top of page ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2010 The SUPERFAMILY authors and Julian Gough.