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  Home > Genomes > Bacteroides thetaiotaomicron VPI-5482 > gi|29349109|ref|NP_812612.1|

Domain assignment for gi|29349109|ref|NP_812612.1| from Bacteroides thetaiotaomicron VPI-5482

Domain architecture

Domain assignment details

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Strong hits

Sequence:  gi|29349109|ref|NP_812612.1|
Domain Number 1 Region: 23-550
Classification Level Classification E-value
Superfamily TPR-like 9.86e-104
Family SusD-like 1.27e-14
Further Details:      
 

Protein sequence

External link(s) gi|29349109|ref|NP_812612.1|
Sequence length 551
Comment SusD, outer membrane protein [Bacteroides thetaiotaomicron VPI-5482]
Sequence 
MKTKYIKQLFSAALIAVLSSGVTSCINDLDISPIDPQTGGSFDQQGVFVKGYAMLGVTGQ
KGIDGSPDLDGQDEGESGFYRTTFNCNELPTDECLWAWQENQDIPQLTSISWSPSSQRTE
WVYVRLGYDITQYNFFLDQTEGMTDAETLRQRAEIRFLRALHYWYFLDLFGKAPFKEHFS
NDLPVEKKGTELYTYIQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYLNAGVYTGQ
TDYAKAEEYASKVIGSAYKLCTNYSELFMADNDENENAMQEIILPIRQDGVKTRNYGGST
YLVCGTRVAGMPRMGTTNGWSCIFARAAMVQKFFSNLEDVPMLPADVEIPTKGLDTDEQI
DAFDAEHGIRTEDMIKAAGDDRALLYSGVGGGRRKIQTDAISGFTDGLSIVKWQNYRSDG
KPVSHATYPDTDIPLFRLAEAYLTRAEAIFRQGGDATGDINELRKRANCTRKVQTVTEQE
LIDEWAREFYLEGRRRSDLVRFGMFTTNKYLWDWKGGAMNGTSVASYYNKYPIPVSDINN
NRNMSQNEGYK
Download sequence
Identical sequences C6IPW7 Q8A1G2
226186.BT_3701 gi|29349109|ref|NP_812612.1|

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.