SUPERFAMILY 1.75 HMM library and genome assignments server

Eubacterium siraeum superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium; [Eubacterium] siraeum

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 2343 total
1368 (58 %) with assignment
306 average length
55 % amino acid coverage
Domains: 2000 total
542 unique superfamilies
317 unique families
286 average length
3.7 average superfamily size
73 % formed by duplication
Domain combinations: 334 domain pairs
751 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

202 177 55 7 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
41 41 7 0 SCOP 47413 lambda repressor-like DNA-binding domains
40 40 17 5 SCOP 51445 (Trans)glycosidases
35 34 12 5 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
32 31 13 0 SCOP 46785 "Winged helix" DNA-binding domain
28 15 6 3 SCOP 53067 Actin-like ATPase domain
28 21 10 0 SCOP 46689 Homeodomain-like
27 27 10 5 SCOP 51735 NAD(P)-binding Rossmann-fold domains
26 22 4 1 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
25 11 11 0 SCOP 49265 Fibronectin type III
22 21 6 1 SCOP 53850 Periplasmic binding protein-like II
21 18 17 1 SCOP 50249 Nucleic acid-binding proteins
20 20 8 1 SCOP 56784 HAD-like
20 20 11 2 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
19 17 13 5 SCOP 54211 Ribosomal protein S5 domain 2-like
19 18 3 0 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
18 12 7 5 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
17 17 3 0 SCOP 102114 Radical SAM enzymes
17 17 5 1 SCOP 52172 CheY-like
17 12 9 0 SCOP 55021 ACT-like
16 16 2 1 SCOP 90123 ABC transporter transmembrane region
15 15 2 3 SCOP 53383 PLP-dependent transferases
15 15 3 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
15 15 5 0 SCOP 56349 DNA breaking-rejoining enzymes
14 14 3 1 SCOP 161098 MetI-like
14 14 4 0 SCOP 56300 Metallo-dependent phosphatases
13 13 10 1 SCOP 55681 Class II aaRS and biotin synthetases
12 12 3 2 SCOP 53448 Nucleotide-diphospho-sugar transferases
11 11 10 2 SCOP 52374 Nucleotidylyl transferase
11 10 8 0 SCOP 54862 4Fe-4S ferredoxins
10 9 3 3 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
9 7 5 2 SCOP 56059 Glutathione synthetase ATP-binding domain-like
9 9 6 2 SCOP 52317 Class I glutamine amidotransferase-like
9 8 6 2 SCOP 51905 FAD/NAD(P)-binding domain
9 9 6 3 SCOP 53098 Ribonuclease H-like
9 9 5 1 SCOP 55174 Alpha-L RNA-binding motif
9 9 3 1 SCOP 109604 HD-domain/PDEase-like
9 9 5 0 SCOP 54001 Cysteine proteinases
9 9 4 0 SCOP 110849 ParB/Sulfiredoxin
9 8 6 2 SCOP 50447 Translation proteins
9 9 8 0 SCOP 55073 Nucleotide cyclase
8 8 3 4 SCOP 51569 Aldolase
8 7 4 1 SCOP 53271 PRTase-like
8 8 4 1 SCOP 52980 Restriction endonuclease-like
8 8 8 3 SCOP 52402 Adenine nucleotide alpha hydrolases-like
8 8 4 1 SCOP 53187 Zn-dependent exopeptidases
8 8 3 0 SCOP 52266 SGNH hydrolase
8 3 2 0 SCOP 49478 Cna protein B-type domain
8 8 3 1 SCOP 46894 C-terminal effector domain of the bipartite response regulators
8 8 4 1 SCOP 53822 Periplasmic binding protein-like I
8 6 3 1 SCOP 116734 DNA methylase specificity domain
8 8 2 0 SCOP 53041 Resolvase-like
8 6 6 1 SCOP 47781 RuvA domain 2-like
8 8 8 2 SCOP 75005 Arabinanase/levansucrase/invertase
7 7 3 3 SCOP 51556 Metallo-dependent hydrolases
7 7 1 0 SCOP 53474 alpha/beta-Hydrolases
7 7 2 3 SCOP 53613 Ribokinase-like
7 7 3 0 SCOP 55811 Nudix
7 6 4 2 SCOP 52096 ClpP/crotonase
7 7 7 1 SCOP 49785 Galactose-binding domain-like
7 7 6 1 SCOP 56601 beta-lactamase/transpeptidase-like
7 7 4 0 SCOP 57783 Zinc beta-ribbon
7 6 4 0 SCOP 55785 PYP-like sensor domain (PAS domain)
7 7 4 1 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
7 7 3 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
7 7 5 1 SCOP 52922 TK C-terminal domain-like
7 5 3 1 SCOP 52440 PreATP-grasp domain
7 7 3 0 SCOP 51215 Regulatory protein AraC
7 7 2 1 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
6 6 4 2 SCOP 50104 Translation proteins SH3-like domain
6 6 4 3 SCOP 75217 alpha/beta knot
6 5 2 0 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
6 6 3 2 SCOP 56796 Dehydroquinate synthase-like
6 6 4 2 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
6 6 3 0 SCOP 46955 Putative DNA-binding domain
6 3 2 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
6 6 2 0 SCOP 109709 KorB DNA-binding domain-like
6 6 6 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 3 1 1 SCOP 54980 EF-G C-terminal domain-like
6 6 5 2 SCOP 53623 MurD-like peptide ligases, catalytic domain
6 6 4 0 SCOP 81653 Calcium ATPase, transduction domain A
5 5 2 3 SCOP 51366 Ribulose-phoshate binding barrel
5 5 1 0 SCOP 52833 Thioredoxin-like
5 5 3 3 SCOP 55120 Pseudouridine synthase
5 5 3 1 SCOP 47240 Ferritin-like
5 5 2 0 SCOP 52218 Flavoproteins
5 5 3 1 SCOP 51161 Trimeric LpxA-like enzymes
5 3 3 0 SCOP 81296 E set domains
5 5 4 3 SCOP 74650 Galactose mutarotase-like
5 5 4 1 SCOP 48208 Six-hairpin glycosidases
5 3 3 0 SCOP 55008 HMA, heavy metal-associated domain
5 5 5 0 SCOP 52058 L domain-like
5 4 4 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
5 5 4 0 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
5 5 3 1 SCOP 81665 Calcium ATPase, transmembrane domain M
4 4 3 1 SCOP 56731 DNA primase core
4 4 3 0 SCOP 89447 AbrB/MazE/MraZ-like
4 4 2 2 SCOP 53633 Carbamate kinase-like
4 4 4 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
4 4 2 2 SCOP 53720 ALDH-like
4 3 3 0 SCOP 48452 TPR-like
4 4 3 0 SCOP 56281 Metallo-hydrolase/oxidoreductase
4 4 2 0 SCOP 51419 PLP-binding barrel
4 4 1 1 SCOP 56801 Acetyl-CoA synthetase-like
4 4 2 2 SCOP 51182 RmlC-like cupins
4 4 1 0 SCOP 54523 Pili subunits
4 4 2 1 SCOP 89550 PHP domain-like
4 4 2 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
4 2 1 0 SCOP 63411 LuxS/MPP-like metallohydrolase
4 4 2 1 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
4 4 3 0 SCOP 50037 C-terminal domain of transcriptional repressors
4 4 2 1 SCOP 63817 Sortase
4 3 2 2 SCOP 53901 Thiolase-like
4 4 4 1 SCOP 103039 CheC-like
4 4 1 2 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
4 4 3 0 SCOP 103190 Sensory domain-like
4 3 2 1 SCOP 51971 Nucleotide-binding domain
4 4 3 0 SCOP 51011 Glycosyl hydrolase domain
4 4 3 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
3 3 1 0 SCOP 55594 HPr-like
3 3 3 1 SCOP 81606 PP2C-like
3 3 3 1 SCOP 56112 Protein kinase-like (PK-like)
3 3 3 2 SCOP 53697 SIS domain
3 3 1 1 SCOP 111331 NAD kinase/diacylglycerol kinase-like
3 3 2 1 SCOP 64182 DHH phosphoesterases
3 3 1 1 SCOP 53784 Phosphofructokinase
3 3 2 1 SCOP 100950 NagB/RpiA/CoA transferase-like
3 3 1 2 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
3 3 3 0 SCOP 51261 Duplicated hybrid motif
3 3 3 2 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
3 3 3 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
3 3 1 1 SCOP 64518 Phase 1 flagellin
3 3 2 1 SCOP 51395 FMN-linked oxidoreductases
3 3 2 0 SCOP 48371 ARM repeat
3 3 3 1 SCOP 52949 Macro domain-like
3 3 1 0 SCOP 50475 FMN-binding split barrel
3 3 2 0 SCOP 55315 L30e-like
3 3 3 1 SCOP 56672 DNA/RNA polymerases
3 3 2 1 SCOP 50891 Cyclophilin-like
3 3 3 1 SCOP 54534 FKBP-like
3 3 1 1 SCOP 53639 AraD/HMP-PK domain-like
3 3 2 1 SCOP 88713 Glycoside hydrolase/deacetylase
3 3 2 1 SCOP 52954 Class II aaRS ABD-related
3 3 2 0 SCOP 54631 CBS-domain pair
3 3 2 0 SCOP 102405 MCP/YpsA-like
3 3 3 0 SCOP 141868 EAL domain-like
3 3 2 3 SCOP 51998 PFL-like glycyl radical enzymes
3 3 3 2 SCOP 81301 Nucleotidyltransferase
3 3 2 2 SCOP 52467 DHS-like NAD/FAD-binding domain
3 2 2 0 SCOP 160537 SpoVG-like
3 3 2 1 SCOP 52335 Methylglyoxal synthase-like
3 3 2 0 SCOP 57802 Rubredoxin-like
3 2 2 1 SCOP 56024 Phospholipase D/nuclease
3 3 2 0 SCOP 49452 Starch-binding domain-like
3 3 3 0 SCOP 82171 DPP6 N-terminal domain-like
3 3 3 0 SCOP 46548 alpha-helical ferredoxin
3 3 1 1 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
3 3 2 0 SCOP 46589 tRNA-binding arm
3 2 2 0 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
3 1 1 0 SCOP 55979 DNA clamp
3 3 3 1 SCOP 56719 Type II DNA topoisomerase
3 3 3 1 SCOP 52009 Phosphohistidine domain
3 1 1 1 SCOP 55973 S-adenosylmethionine synthetase
3 3 2 0 SCOP 158472 HAMP domain-like
3 2 2 0 SCOP 116726 TrkA C-terminal domain-like
3 3 1 0 SCOP 50621 Alanine racemase C-terminal domain-like
3 3 3 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
3 2 2 1 SCOP 56042 PurM C-terminal domain-like
3 3 3 1 SCOP 53920 Fe-only hydrogenase
3 3 1 0 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
3 3 2 0 SCOP 52279 Beta-D-glucan exohydrolase, C-terminal domain
3 2 2 1 SCOP 55326 PurM N-terminal domain-like
3 3 3 0 SCOP 52113 BRCT domain
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 1 1 0 SCOP 53738 Phosphoglucomutase, first 3 domains
3 3 2 1 SCOP 53743 FucI/AraA N-terminal and middle domains
3 3 2 0 SCOP 69189 Penicillin-binding protein associated domain
3 3 2 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
3 3 3 1 SCOP 81271 TGS-like
3 2 2 0 SCOP 49303 beta-Galactosidase/glucuronidase domain
3 3 1 1 SCOP 101821 Aminopeptidase/glucanase lid domain
2 2 2 0 SCOP 48013 NusB-like
2 2 1 1 SCOP 53167 Purine and uridine phosphorylases
2 2 2 1 SCOP 53927 Cytidine deaminase-like
2 2 1 1 SCOP 52141 Uracil-DNA glycosylase-like
2 2 1 1 SCOP 56420 Peptide deformylase
2 2 2 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 1 SCOP 55920 Creatinase/aminopeptidase
2 1 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
2 2 1 0 SCOP 118010 TM1457-like
2 2 1 1 SCOP 75620 Release factor
2 2 1 0 SCOP 47336 ACP-like
2 2 1 0 SCOP 103473 MFS general substrate transporter
2 2 1 1 SCOP 82549 DAK1/DegV-like
2 2 2 1 SCOP 82649 SufE/NifU
2 2 2 1 SCOP 50324 Inorganic pyrophosphatase
2 2 2 0 SCOP 81333 F1F0 ATP synthase subunit C
2 2 2 1 SCOP 109755 PhoU-like
2 2 1 1 SCOP 48557 L-aspartase-like
2 2 2 1 SCOP 48150 DNA-glycosylase
2 2 1 0 SCOP 53254 Phosphoglycerate mutase-like
2 2 2 0 SCOP 117143 Flagellar hook protein flgE
2 2 1 1 SCOP 55298 YjgF-like
2 1 1 1 SCOP 110296 Oligoxyloglucan reducing end-specific cellobiohydrolase
2 2 2 1 SCOP 88723 PIN domain-like
2 2 2 1 SCOP 53328 Formyltransferase
2 2 2 1 SCOP 53649 Alkaline phosphatase-like
2 2 2 0 SCOP 56317 Carbon-nitrogen hydrolase
2 2 2 0 SCOP 51306 LexA/Signal peptidase
2 2 2 0 SCOP 49899 Concanavalin A-like lectins/glucanases
2 2 2 0 SCOP 55781 GAF domain-like
2 2 2 1 SCOP 52151 FabD/lysophospholipase-like
2 2 2 1 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
2 2 2 1 SCOP 55931 Glutamine synthetase/guanido kinase
2 2 1 0 SCOP 101478 ADP-ribosylglycohydrolase
2 2 2 2 SCOP 53795 PEP carboxykinase-like
2 2 1 0 SCOP 141571 Pentapeptide repeat-like
2 2 1 0 SCOP 54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
2 2 2 0 SCOP 54909 Dimeric alpha+beta barrel
2 2 2 0 SCOP 52016 LeuD/IlvD-like
2 2 2 1 SCOP 111352 Ammonium transporter
2 2 1 0 SCOP 53807 "Helical backbone" metal receptor
2 2 2 1 SCOP 51230 Single hybrid motif
2 2 2 0 SCOP 160246 EspE N-terminal domain-like
2 2 2 0 SCOP 81901 HCP-like
2 2 2 0 SCOP 53300 vWA-like
2 2 1 0 SCOP 50118 Cell growth inhibitor/plasmid maintenance toxic component
2 2 2 0 SCOP 54913 GlnB-like
2 2 2 0 SCOP 54736 ClpS-like
2 2 2 1 SCOP 53955 Lysozyme-like
2 2 2 1 SCOP 53732 Aconitase iron-sulfur domain
2 2 2 1 SCOP 69065 RNase III domain-like
2 2 2 0 SCOP 88697 PUA domain-like
2 2 1 1 SCOP 55826 YbaK/ProRS associated domain
2 2 1 1 SCOP 161070 SNF-like
2 2 2 0 SCOP 75138 HprK N-terminal domain-like
2 2 2 0 SCOP 101801 Surface presentation of antigens (SPOA)
2 2 2 0 SCOP 50346 PRC-barrel domain
2 2 2 1 SCOP 55186 ThrRS/AlaRS common domain
2 2 1 0 SCOP 48498 Tetracyclin repressor-like, C-terminal domain
2 2 2 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
2 2 2 0 SCOP 48024 N-terminal domain of DnaB helicase
2 2 2 0 SCOP 50156 PDZ domain-like
2 2 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
2 2 2 0 SCOP 52200 Toll/Interleukin receptor TIR domain
2 2 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
2 2 1 1 SCOP 51246 Rudiment single hybrid motif
2 2 1 0 SCOP 56176 FAD-binding/transporter-associated domain-like
2 2 2 0 SCOP 81923 Double Clp-N motif
2 2 2 0 SCOP 160443 SMR domain-like
2 2 2 0 SCOP 69304 Tricorn protease N-terminal domain
2 2 1 1 SCOP 48019 post-AAA+ oligomerization domain-like
2 2 1 0 SCOP 49384 Carbohydrate-binding domain
2 1 1 1 SCOP 48029 FliG
2 1 1 0 SCOP 158499 DnaD domain-like
2 2 2 0 SCOP 49373 Invasin/intimin cell-adhesion fragments
2 2 2 1 SCOP 48334 DNA repair protein MutS, domain III
2 2 2 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 2 1 0 SCOP 101967 Adhesin YadA, collagen-binding domain
2 2 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
2 2 1 0 SCOP 47979 Iron-dependent repressor protein, dimerization domain
2 2 2 0 SCOP 63380 Riboflavin synthase domain-like
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 1 0 SCOP 51984 MurCD N-terminal domain
2 2 1 0 SCOP 54373 FAD-linked reductases, C-terminal domain
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 1 0 SCOP 117892 Band 7/SPFH domain
2 2 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
2 2 1 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
2 2 2 1 SCOP 55271 DNA repair protein MutS, domain I
2 2 1 0 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
2 2 1 0 SCOP 55261 GAD domain-like
2 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
2 1 1 1 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
2 1 1 0 SCOP 55666 Ribonuclease PH domain 2-like
2 1 1 0 SCOP 54184 Penicillin-binding protein 2x (pbp-2x), c-terminal domain
1 1 1 0 SCOP 53790 Tetrapyrrole methylase
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 1 SCOP 142433 CinA-like
1 1 1 0 SCOP 82607 YbaB-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 0 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 1 SCOP 46946 S13-like H2TH domain
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
1 1 1 1 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
1 1 1 0 SCOP 53597 Dihydrofolate reductase-like
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 51658 Xylose isomerase-like
1 1 1 0 SCOP 143800 L28p-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 75625 YebC-like
1 1 1 1 SCOP 47729 IHF-like DNA-binding proteins
1 1 1 1 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
1 1 1 0 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
1 1 1 1 SCOP 89623 Ribose/Galactose isomerase RpiB/AlsB
1 1 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 1 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 1 SCOP 69765 IpsF-like
1 1 1 1 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
1 1 1 1 SCOP 51730 FAD-linked oxidoreductase
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 1 SCOP 51283 dUTPase-like
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 0 SCOP 54292 2Fe-2S ferredoxin-like
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 1 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 1 SCOP 55205 EPT/RTPC-like
1 1 1 0 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
1 1 1 0 SCOP 140566 FlgN-like
1 1 1 1 SCOP 52304 Type II 3-dehydroquinate dehydratase
1 1 1 0 SCOP 117130 CsrA-like
1 1 1 1 SCOP 48576 Terpenoid synthases
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 1 SCOP 51430 NAD(P)-linked oxidoreductase
1 1 1 0 SCOP 55469 FMN-dependent nitroreductase-like
1 1 1 1 SCOP 48256 Citrate synthase
1 1 1 1 SCOP 69500 DTD-like
1 1 1 0 SCOP 47226 Histidine-containing phosphotransfer domain, HPT domain
1 1 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
1 1 1 0 SCOP 54427 NTF2-like
1 1 1 0 SCOP 52499 Isochorismatase-like hydrolases
1 1 1 0 SCOP 48239 Terpenoid cyclases/Protein prenyltransferases
1 1 1 0 SCOP 159468 AtpF-like
1 1 1 0 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 1 0 SCOP 47819 HRDC-like
1 1 1 1 SCOP 52972 ITPase-like
1 1 1 1 SCOP 82282 Homocysteine S-methyltransferase
1 1 1 0 SCOP 103486 V-type ATP synthase subunit C
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 0 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 55961 Bet v1-like
1 1 1 0 SCOP 56399 ADP-ribosylation
1 1 1 0 SCOP 58113 Apolipoprotein A-I
1 1 1 0 SCOP 101960 Stabilizer of iron transporter SufD
1 1 1 1 SCOP 141734 HisI-like
1 1 1 0 SCOP 111038 YjbQ-like
1 1 1 0 SCOP 69118 AhpD-like
1 1 1 0 SCOP 143422 Transposase IS200-like
1 1 1 0 SCOP 52091 SpoIIaa-like
1 1 1 0 SCOP 51717 Dihydropteroate synthetase-like
1 1 1 0 SCOP 103642 Sec-C motif
1 1 1 0 SCOP 55718 SCP-like
1 1 1 1 SCOP 50494 Trypsin-like serine proteases
1 1 1 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 1 0 SCOP 143011 RelE-like
1 1 1 0 SCOP 50341 CheW-like
1 1 1 1 SCOP 142754 NadA-like
1 1 1 1 SCOP 56266 DmpA/ArgJ-like
1 1 1 0 SCOP 82771 GIY-YIG endonuclease
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 55797 PR-1-like
1 1 1 0 SCOP 55154 CYTH-like phosphatases
1 1 1 0 SCOP 81340 Clc chloride channel
1 1 1 0 SCOP 161111 Cation efflux protein transmembrane domain-like
1 1 1 0 SCOP 109854 DinB/YfiT-like putative metalloenzymes
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 0 SCOP 116842 XseB-like
1 1 1 1 SCOP 111304 Recombination protein RecR
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 0 SCOP 159894 YgaC/TfoX-N like
1 1 1 0 SCOP 54518 Tubby C-terminal domain-like
1 1 1 0 SCOP 54975 Acylphosphatase/BLUF domain-like
1 1 1 0 SCOP 103084 Holliday junction resolvase RusA
1 1 1 0 SCOP 111369 HlyD-like secretion proteins
1 1 1 0 SCOP 102829 Cell division protein ZapA-like
1 1 1 1 SCOP 51391 Thiamin phosphate synthase
1 1 1 1 SCOP 144052 Thermophilic metalloprotease-like
1 1 1 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
1 1 1 0 SCOP 89095 GatB/YqeY motif
1 1 1 0 SCOP 81330 Gated mechanosensitive channel
1 1 1 0 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 103088 OmpA-like
1 1 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
1 1 1 0 SCOP 55804 Phoshotransferase/anion transport protein
1 1 1 0 SCOP 48295 TrpR-like
1 1 1 0 SCOP 140931 Fic-like
1 1 1 1 SCOP 143631 ApbE-like
1 1 1 1 SCOP 56821 Prismane protein-like
1 1 1 0 SCOP 158622 YheA/YmcA-like
1 1 1 0 SCOP 140683 SP0561-like
1 1 1 0 SCOP 50814 Lipocalins
1 1 1 0 SCOP 56507 Methionine synthase activation domain-like
1 1 1 0 SCOP 101116 Flagellar export chaperone FliS
1 1 1 0 SCOP 141457 BH3618-like
1 1 1 0 SCOP 101473 DhaL-like
1 1 1 0 SCOP 50486 FMT C-terminal domain-like
1 1 1 0 SCOP 53163 HybD-like
1 1 1 0 SCOP 160940 Api92-like
1 1 1 0 SCOP 53146 Nitrogenase accessory factor-like
1 1 1 0 SCOP 50331 MOP-like
1 1 1 0 SCOP 75471 YhbY-like
1 1 1 0 SCOP 69754 Ribosome binding protein Y (YfiA homologue)
1 1 1 0 SCOP 101498 Anti-sigma factor FlgM
1 1 1 0 SCOP 142906 YjbR-like
1 1 1 0 SCOP 55136 Probable bacterial effector-binding domain
1 1 1 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
1 1 1 1 SCOP 46565 Chaperone J-domain
1 1 1 0 SCOP 102546 RbsD-like
1 1 1 1 SCOP 56574 Serpins
1 1 1 0 SCOP 143437 THUMP domain-like
1 1 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
1 1 1 0 SCOP 52777 CoA-dependent acyltransferases
1 1 1 0 SCOP 56563 Major capsid protein gp5
1 1 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
1 1 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 0 SCOP 143865 CorA soluble domain-like
1 1 1 1 SCOP 158832 Tex N-terminal region-like
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 0 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
1 1 1 1 SCOP 52794 PTS system IIB component-like
1 1 1 1 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 101898 NHL repeat
1 1 1 0 SCOP 55608 Homing endonucleases
1 1 1 1 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 50405 Actin-crosslinking proteins
1 1 1 0 SCOP 118352 HSP33 redox switch-like
1 1 1 0 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
1 1 1 0 SCOP 54106 LysM domain
1 1 1 0 SCOP 160544 EscU C-terminal domain-like
1 1 1 0 SCOP 158221 YnzC-like
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 81573 F1F0 ATP synthase subunit B, membrane domain
1 1 1 0 SCOP 69360 Cell wall binding repeat
1 1 1 0 SCOP 52935 PK C-terminal domain-like
1 1 1 0 SCOP 118116 DNA mismatch repair protein MutL
1 1 1 0 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 1 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 1 SCOP 68923 PEP carboxykinase N-terminal domain
1 1 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 1 SCOP 56037 PheT/TilS domain
1 1 1 0 SCOP 47090 PGBD-like
1 1 1 0 SCOP 63999 Thiamin pyrophosphokinase, catalytic domain
1 1 1 0 SCOP 55307 Tubulin C-terminal domain-like
1 1 1 1 SCOP 140990 FtsH protease domain-like
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 0 SCOP 74853 Lamin A/C globular tail domain
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 0 SCOP 54171 DNA-binding domain
1 1 1 0 SCOP 49363 Purple acid phosphatase, N-terminal domain
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 81891 Poly A polymerase C-terminal region-like
1 1 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
1 1 1 0 SCOP 57825 Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
1 1 1 0 SCOP 57863 ArfGap/RecO-like zinc finger
1 1 1 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 90209 Ran binding protein zinc finger-like
1 1 1 0 SCOP 160964 MalF N-terminal region-like
1 1 1 0 SCOP 81631 PAP/OAS1 substrate-binding domain
1 1 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
1 1 1 0 SCOP 46604 Epsilon subunit of F1F0-ATP synthase C-terminal domain
1 1 1 0 SCOP 63418 MurE/MurF N-terminal domain
1 1 1 0 SCOP 75569 Archaeal IMP cyclohydrolase PurO
1 1 1 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
1 1 1 0 SCOP 55945 TATA-box binding protein-like
1 1 1 0 SCOP 54768 dsRNA-binding domain-like
1 1 1 0 SCOP 141259 CarD-like
1 1 1 0 SCOP 53155 Methylated DNA-protein cysteine methyltransferase domain
1 1 1 0 SCOP 47831 Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
1 1 1 0 SCOP 54752 RecA protein, C-terminal domain
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 0 SCOP 89082 Antibiotic binding domain of TipA-like multidrug resistance regulators
1 1 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 1 SCOP 50443 FucI/AraA C-terminal domain-like
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 1 SCOP 64397 Hsp33 domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 0 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
1 1 1 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 0 SCOP 143724 PHP14-like
1 1 1 0 SCOP 142019 Nqo1 FMN-binding domain-like
1 1 1 0 SCOP 47757 Chemotaxis receptor methyltransferase CheR, N-terminal domain
1 1 1 1 SCOP 64158 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 1 0 SCOP 110942 HSP90 C-terminal domain
1 1 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 1 SCOP 75553 Smc hinge domain
1 1 1 0 SCOP 160527 V-type ATPase subunit E-like
1 1 1 0 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 89000 post-HMGL domain-like
1 1 1 0 SCOP 63862 Thiamin pyrophosphokinase, substrate-binding domain
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 116878 TrmE connector domain
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 0 SCOP 143517 TRCF domain-like
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 1 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 46929 DNA helicase RuvA subunit, C-terminal domain
1 1 1 0 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 0 SCOP 53150 DNA repair protein MutS, domain II
1 1 1 0 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 140356 PPK N-terminal domain-like
1 1 1 0 SCOP 56519 Penicillin binding protein dimerisation domain
1 1 1 0 SCOP 117125 Putative glucosidase YicI, C-terminal domain
1 1 1 1 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 82829 MesJ substrate recognition domain-like
1 1 1 0 SCOP 102741 Obg GTP-binding protein C-terminal domain
1 1 1 0 SCOP 46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
1 1 1 0 SCOP 160996 HI0933 insert domain-like

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