SUPERFAMILY 1.75 HMM library and genome assignments server

Candidatus Tremblaya princeps PCIT superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Proteobacteria; Betaproteobacteria; unclassified Betaproteobacteria; Candidatus Tremblaya; Candidatus Tremblaya princeps; Candidatus Tremblaya princeps PCIT

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Domain assignments


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Assignment statistics

Sequences: 121 total
110 (91 %) with assignment
252 average length
88 % amino acid coverage
Domains: 151 total
105 unique superfamilies
47 unique families
243 average length
1.4 average superfamily size
30 % formed by duplication
Domain combinations: 35 domain pairs
99 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

10 6 3 1 SCOP 50249 Nucleic acid-binding proteins
9 8 7 2 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
5 4 4 1 SCOP 54211 Ribosomal protein S5 domain 2-like
5 4 4 2 SCOP 50447 Translation proteins
4 4 2 2 SCOP 51569 Aldolase
3 3 3 2 SCOP 51735 NAD(P)-binding Rossmann-fold domains
2 2 1 0 SCOP 52317 Class I glutamine amidotransferase-like
2 2 2 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 1 1 SCOP 51366 Ribulose-phoshate binding barrel
2 2 2 1 SCOP 50104 Translation proteins SH3-like domain
2 2 1 1 SCOP 53137 Translational machinery components
2 1 1 1 SCOP 53067 Actin-like ATPase domain
2 2 1 0 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
2 1 1 1 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
2 2 1 0 SCOP 53850 Periplasmic binding protein-like II
2 2 1 0 SCOP 47060 S15/NS1 RNA-binding domain
2 2 2 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 1 1 1 SCOP 51726 UROD/MetE-like
2 2 2 0 SCOP 52016 LeuD/IlvD-like
2 1 1 1 SCOP 54980 EF-G C-terminal domain-like
2 1 1 0 SCOP 56053 Ribosomal protein L6
2 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
1 1 1 0 SCOP 53271 PRTase-like
1 1 1 0 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 0 SCOP 56112 Protein kinase-like (PK-like)
1 1 1 0 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
1 1 1 0 SCOP 56047 Ribosomal protein S8
1 1 1 0 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 0 SCOP 46946 S13-like H2TH domain
1 1 1 0 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 0 SCOP 143800 L28p-like
1 1 1 0 SCOP 53098 Ribonuclease H-like
1 1 1 1 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
1 1 1 1 SCOP 55174 Alpha-L RNA-binding motif
1 1 1 1 SCOP 53383 PLP-dependent transferases
1 1 1 1 SCOP 82649 SufE/NifU
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 1 SCOP 52402 Adenine nucleotide alpha hydrolases-like
1 1 1 0 SCOP 50129 GroES-like
1 1 1 0 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 53633 Carbamate kinase-like
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 1 SCOP 51730 FAD-linked oxidoreductase
1 1 1 1 SCOP 51161 Trimeric LpxA-like enzymes
1 1 1 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 0 SCOP 54862 4Fe-4S ferredoxins
1 1 1 0 SCOP 89360 HesB-like domain
1 1 1 0 SCOP 54292 2Fe-2S ferredoxin-like
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 0 SCOP 102114 Radical SAM enzymes
1 1 1 1 SCOP 52096 ClpP/crotonase
1 1 1 1 SCOP 55205 EPT/RTPC-like
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 1 SCOP 56796 Dehydroquinate synthase-like
1 1 1 0 SCOP 111148 YggX-like
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 0 SCOP 141734 HisI-like
1 1 1 0 SCOP 81301 Nucleotidyltransferase
1 1 1 0 SCOP 89550 PHP domain-like
1 1 1 0 SCOP 52467 DHS-like NAD/FAD-binding domain
1 1 1 0 SCOP 54736 ClpS-like
1 1 1 1 SCOP 53732 Aconitase iron-sulfur domain
1 1 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
1 1 1 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
1 1 1 0 SCOP 101738 SspB-like
1 1 1 0 SCOP 46565 Chaperone J-domain
1 1 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 1 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
1 1 1 0 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 48019 post-AAA+ oligomerization domain-like
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 0 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 1 0 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 0 SCOP 54768 dsRNA-binding domain-like
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain

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