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Candidatus Moranella endobia PCIT superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Candidatus Moranella; Candidatus Moranella endobia; Candidatus Moranella endobia PCIT

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Domain assignments


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Assignment statistics

Sequences: 406 total
359 (88 %) with assignment
340 average length
80 % amino acid coverage
Domains: 598 total
310 unique superfamilies
275 unique families
308 average length
1.9 average superfamily size
48 % formed by duplication
Domain combinations: 173 domain pairs
293 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

50 45 31 9 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
31 22 16 5 SCOP 50249 Nucleic acid-binding proteins
13 13 10 2 SCOP 55681 Class II aaRS and biotin synthetases
12 6 2 3 SCOP 53067 Actin-like ATPase domain
12 10 9 4 SCOP 54211 Ribosomal protein S5 domain 2-like
11 11 10 2 SCOP 52374 Nucleotidylyl transferase
10 10 7 4 SCOP 51735 NAD(P)-binding Rossmann-fold domains
8 7 7 2 SCOP 50447 Translation proteins
7 7 2 4 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
7 7 2 4 SCOP 53098 Ribonuclease H-like
6 3 3 4 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
6 6 6 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 3 3 1 SCOP 54980 EF-G C-terminal domain-like
5 5 4 3 SCOP 50104 Translation proteins SH3-like domain
5 5 3 3 SCOP 55120 Pseudouridine synthase
5 5 3 1 SCOP 55174 Alpha-L RNA-binding motif
5 2 2 1 SCOP 57783 Zinc beta-ribbon
4 3 3 2 SCOP 56059 Glutathione synthetase ATP-binding domain-like
4 4 2 1 SCOP 52833 Thioredoxin-like
4 4 4 1 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
4 3 3 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
4 4 2 3 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
3 3 3 1 SCOP 51905 FAD/NAD(P)-binding domain
3 2 2 1 SCOP 51366 Ribulose-phoshate binding barrel
3 3 1 2 SCOP 53383 PLP-dependent transferases
3 3 3 2 SCOP 52402 Adenine nucleotide alpha hydrolases-like
3 3 2 2 SCOP 51161 Trimeric LpxA-like enzymes
3 3 2 0 SCOP 89360 HesB-like domain
3 3 3 2 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
3 3 1 2 SCOP 52096 ClpP/crotonase
3 3 1 1 SCOP 75169 DsrEFH-like
3 2 2 2 SCOP 54534 FKBP-like
3 3 3 1 SCOP 52954 Class II aaRS ABD-related
3 3 2 0 SCOP 56601 beta-lactamase/transpeptidase-like
3 2 2 1 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
3 3 1 1 SCOP 90123 ABC transporter transmembrane region
3 3 2 0 SCOP 46589 tRNA-binding arm
3 1 1 1 SCOP 55979 DNA clamp
3 3 2 1 SCOP 48019 post-AAA+ oligomerization domain-like
3 3 3 2 SCOP 52922 TK C-terminal domain-like
3 2 2 1 SCOP 52440 PreATP-grasp domain
3 2 2 2 SCOP 63380 Riboflavin synthase domain-like
3 2 2 0 SCOP 117892 Band 7/SPFH domain
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
2 2 1 2 SCOP 51569 Aldolase
2 2 2 1 SCOP 52317 Class I glutamine amidotransferase-like
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 1 SCOP 46946 S13-like H2TH domain
2 2 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
2 2 2 2 SCOP 52218 Flavoproteins
2 2 1 2 SCOP 143800 L28p-like
2 2 1 1 SCOP 75620 Release factor
2 2 2 2 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
2 2 2 2 SCOP 75217 alpha/beta knot
2 2 2 2 SCOP 52980 Restriction endonuclease-like
2 2 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 2 0 SCOP 51261 Duplicated hybrid motif
2 2 1 1 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
2 2 2 0 SCOP 54862 4Fe-4S ferredoxins
2 2 2 2 SCOP 50715 Ribosomal protein L25-like
2 2 1 1 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
2 2 1 0 SCOP 102114 Radical SAM enzymes
2 2 1 0 SCOP 49764 HSP20-like chaperones
2 2 1 1 SCOP 101960 Stabilizer of iron transporter SufD
2 2 2 0 SCOP 46955 Putative DNA-binding domain
2 2 2 1 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
2 2 2 1 SCOP 51230 Single hybrid motif
2 2 2 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
2 2 2 0 SCOP 81301 Nucleotidyltransferase
2 2 2 1 SCOP 53955 Lysozyme-like
2 2 2 1 SCOP 88697 PUA domain-like
2 1 1 1 SCOP 53901 Thiolase-like
2 1 1 0 SCOP 56024 Phospholipase D/nuclease
2 2 2 1 SCOP 47781 RuvA domain 2-like
2 2 2 1 SCOP 55186 ThrRS/AlaRS common domain
2 1 1 1 SCOP 48592 GroEL equatorial domain-like
2 1 1 0 SCOP 50156 PDZ domain-like
2 1 1 1 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
2 2 2 1 SCOP 56719 Type II DNA topoisomerase
2 2 2 1 SCOP 52210 Succinyl-CoA synthetase domains
2 2 2 1 SCOP 56037 PheT/TilS domain
2 2 2 0 SCOP 81891 Poly A polymerase C-terminal region-like
2 2 2 1 SCOP 54768 dsRNA-binding domain-like
2 1 1 0 SCOP 47794 Rad51 N-terminal domain-like
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 1 1 1 SCOP 55124 Nitrite/Sulfite reductase N-terminal domain-like
2 2 2 1 SCOP 81271 TGS-like
2 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
2 1 1 1 SCOP 55666 Ribonuclease PH domain 2-like
2 2 1 0 SCOP 56519 Penicillin binding protein dimerisation domain
1 1 1 1 SCOP 51556 Metallo-dependent hydrolases
1 1 1 1 SCOP 56731 DNA primase core
1 1 1 1 SCOP 48013 NusB-like
1 1 1 1 SCOP 53271 PRTase-like
1 1 1 1 SCOP 55594 HPr-like
1 1 1 1 SCOP 53927 Cytidine deaminase-like
1 1 1 1 SCOP 53790 Tetrapyrrole methylase
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 1 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 52141 Uracil-DNA glycosylase-like
1 1 1 1 SCOP 56420 Peptide deformylase
1 1 1 1 SCOP 53697 SIS domain
1 1 1 0 SCOP 56784 HAD-like
1 1 1 0 SCOP 54197 HIT-like
1 1 1 1 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 1 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 1 SCOP 55920 Creatinase/aminopeptidase
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 1 SCOP 64182 DHH phosphoesterases
1 1 1 1 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 56300 Metallo-dependent phosphatases
1 1 1 1 SCOP 53784 Phosphofructokinase
1 1 1 1 SCOP 47240 Ferritin-like
1 1 1 1 SCOP 141091 L21p-like
1 1 1 1 SCOP 110324 Ribosomal L27 protein-like
1 1 1 0 SCOP 46785 "Winged helix" DNA-binding domain
1 1 1 0 SCOP 47336 ACP-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 75625 YebC-like
1 1 1 1 SCOP 82649 SufE/NifU
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 1 SCOP 46992 Ribosomal protein S20
1 1 1 1 SCOP 109998 Triger factor/SurA peptide-binding domain-like
1 1 1 1 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
1 1 1 1 SCOP 50129 GroES-like
1 1 1 1 SCOP 53850 Periplasmic binding protein-like II
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 1 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 1 SCOP 54565 Ribosomal protein S16
1 1 1 1 SCOP 48557 L-aspartase-like
1 1 1 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
1 1 1 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
1 1 1 1 SCOP 51283 dUTPase-like
1 1 1 1 SCOP 111337 QueA-like
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 1 SCOP 56770 HydA/Nqo6-like
1 1 1 0 SCOP 48452 TPR-like
1 1 1 0 SCOP 54292 2Fe-2S ferredoxin-like
1 1 1 0 SCOP 55811 Nudix
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 0 SCOP 56281 Metallo-hydrolase/oxidoreductase
1 1 1 1 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
1 1 1 1 SCOP 56655 Carbohydrate phosphatase
1 1 1 1 SCOP 53254 Phosphoglycerate mutase-like
1 1 1 0 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
1 1 1 0 SCOP 55229 Cell division protein MinE topological specificity domain
1 1 1 1 SCOP 56935 Porins
1 1 1 0 SCOP 51395 FMN-linked oxidoreductases
1 1 1 1 SCOP 82657 BolA-like
1 1 1 1 SCOP 52304 Type II 3-dehydroquinate dehydratase
1 1 1 1 SCOP 46689 Homeodomain-like
1 1 1 0 SCOP 117130 CsrA-like
1 1 1 1 SCOP 64307 SirA-like
1 1 1 1 SCOP 52121 Lumazine synthase
1 1 1 0 SCOP 69721 DsrC, the gamma subunit of dissimilatory sulfite reductase
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 1 SCOP 54995 Ribosomal protein S6
1 1 1 0 SCOP 50182 Sm-like ribonucleoproteins
1 1 1 0 SCOP 109604 HD-domain/PDEase-like
1 1 1 0 SCOP 55315 L30e-like
1 1 1 1 SCOP 56672 DNA/RNA polymerases
1 1 1 1 SCOP 88723 PIN domain-like
1 1 1 1 SCOP 53328 Formyltransferase
1 1 1 1 SCOP 56322 ADC synthase
1 1 1 1 SCOP 51306 LexA/Signal peptidase
1 1 1 1 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 1 SCOP 52151 FabD/lysophospholipase-like
1 1 1 0 SCOP 69618 HemD-like
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 1 SCOP 52172 CheY-like
1 1 1 0 SCOP 143243 Nqo5-like
1 1 1 1 SCOP 51998 PFL-like glycyl radical enzymes
1 1 1 1 SCOP 50494 Trypsin-like serine proteases
1 1 1 0 SCOP 53807 "Helical backbone" metal receptor
1 1 1 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
1 1 1 0 SCOP 89550 PHP domain-like
1 1 1 0 SCOP 50692 ADC-like
1 1 1 1 SCOP 63892 Pyridoxine 5'-phosphate synthase
1 1 1 1 SCOP 56762 HydB/Nqo4-like
1 1 1 0 SCOP 46894 C-terminal effector domain of the bipartite response regulators
1 1 1 1 SCOP 54736 ClpS-like
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 1 SCOP 69065 RNase III domain-like
1 1 1 1 SCOP 56219 DNase I-like
1 1 1 1 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 1 SCOP 158442 DsbB-like
1 1 1 0 SCOP 51391 Thiamin phosphate synthase
1 1 1 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
1 1 1 1 SCOP 102400 DNA polymerase III chi subunit
1 1 1 0 SCOP 81330 Gated mechanosensitive channel
1 1 1 0 SCOP 55826 YbaK/ProRS associated domain
1 1 1 1 SCOP 103025 Folate-binding domain
1 1 1 1 SCOP 52335 Methylglyoxal synthase-like
1 1 1 1 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
1 1 1 0 SCOP 50037 C-terminal domain of transcriptional repressors
1 1 1 1 SCOP 111384 OmpH-like
1 1 1 0 SCOP 75138 HprK N-terminal domain-like
1 1 1 1 SCOP 53062 PTS system fructose IIA component-like
1 1 1 1 SCOP 50486 FMT C-terminal domain-like
1 1 1 1 SCOP 101738 SspB-like
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 0 SCOP 50974 Nitrous oxide reductase, N-terminal domain
1 1 1 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
1 1 1 1 SCOP 46565 Chaperone J-domain
1 1 1 0 SCOP 50346 PRC-barrel domain
1 1 1 0 SCOP 46548 alpha-helical ferredoxin
1 1 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
1 1 1 1 SCOP 52777 CoA-dependent acyltransferases
1 1 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 1 1 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
1 1 1 1 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
1 1 1 1 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 0 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
1 1 1 0 SCOP 102220 DNA polymerase III psi subunit
1 1 1 1 SCOP 51246 Rudiment single hybrid motif
1 1 1 1 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 1 SCOP 81923 Double Clp-N motif
1 1 1 1 SCOP 52728 PTS IIb component
1 1 1 1 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 1 SCOP 141255 YccV-like
1 1 1 1 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 63848 Cell-division inhibitor MinC, C-terminal domain
1 1 1 0 SCOP 52935 PK C-terminal domain-like
1 1 1 1 SCOP 52009 Phosphohistidine domain
1 1 1 1 SCOP 109635 DnaK suppressor protein DksA, alpha-hairpin domain
1 1 1 1 SCOP 118116 DNA mismatch repair protein MutL
1 1 1 1 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 1 SCOP 48334 DNA repair protein MutS, domain III
1 1 1 1 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 1 SCOP 55307 Tubulin C-terminal domain-like
1 1 1 1 SCOP 140990 FtsH protease domain-like
1 1 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
1 1 1 0 SCOP 142984 Nqo1 middle domain-like
1 1 1 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
1 1 1 1 SCOP 54826 Enolase N-terminal domain-like
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 68912 Rho N-terminal domain-like
1 1 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
1 1 1 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 52113 BRCT domain
1 1 1 1 SCOP 47831 Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
1 1 1 1 SCOP 81624 N-terminal domain of MutM-like DNA repair proteins
1 1 1 0 SCOP 54752 RecA protein, C-terminal domain
1 1 1 1 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 0 SCOP 140490 Nqo1C-terminal domain-like
1 1 1 1 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 1 SCOP 55271 DNA repair protein MutS, domain I
1 1 1 1 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
1 1 1 1 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 1 SCOP 142019 Nqo1 FMN-binding domain-like
1 1 1 1 SCOP 55261 GAD domain-like
1 1 1 1 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 1 0 SCOP 75615 Siroheme synthase middle domains-like
1 1 1 1 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 1 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
1 1 1 1 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 0 SCOP 101790 Aminomethyltransferase beta-barrel domain
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 1 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 1 SCOP 117023 DNA primase DnaG, C-terminal domain
1 1 1 0 SCOP 46929 DNA helicase RuvA subunit, C-terminal domain
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 0 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 1 SCOP 53150 DNA repair protein MutS, domain II
1 1 1 1 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 82829 MesJ substrate recognition domain-like
1 1 1 0 SCOP 46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain

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