SUPERFAMILY 1.75 HMM library and genome assignments server

Populus trichocarpa v156 superfamily assignments

Taxonomy
Taxonomy browser entry

Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus; Populus trichocarpa

Downloads
Fasta format sequences
Domain assignments


Jump to [ Top of page · Domain assignments ]

Assignment statistics

Sequences: 45033 total
26591 (59 %) with assignment
383 average length
44 % amino acid coverage
Domains: 37760 total
974 unique superfamilies
814 unique families
286 average length
38.8 average superfamily size
97 % formed by duplication
Domain combinations: 994 domain pairs
3703 unique architectures

Jump to [ Top of page · Assignment statistics ]

Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies