SUPERFAMILY 1.75 HMM library and genome assignments server

Babela massiliensis superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; unclassified Deltaproteobacteria; unclassified Deltaproteobacteria (miscellaneous); delta proteobacterium BABL1

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Domain assignments


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Assignment statistics

Sequences: 979 total
611 (62 %) with assignment
333 average length
54 % amino acid coverage
Domains: 896 total
319 unique superfamilies
131 unique families
289 average length
2.8 average superfamily size
64 % formed by duplication
Domain combinations: 149 domain pairs
361 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

153 125 13 1 SCOP 48403 Ankyrin repeat
100 91 40 8 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
39 4 4 0 SCOP 48726 Immunoglobulin
23 17 14 2 SCOP 50249 Nucleic acid-binding proteins
12 12 5 0 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
12 11 10 4 SCOP 54211 Ribosomal protein S5 domain 2-like
11 11 3 1 SCOP 53474 alpha/beta-Hydrolases
11 11 10 2 SCOP 52374 Nucleotidylyl transferase
10 10 8 1 SCOP 55681 Class II aaRS and biotin synthetases
8 8 4 1 SCOP 52833 Thioredoxin-like
8 5 5 1 SCOP 53067 Actin-like ATPase domain
8 8 1 0 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
8 7 7 2 SCOP 50447 Translation proteins
7 7 3 0 SCOP 56784 HAD-like
7 7 3 0 SCOP 55811 Nudix
7 7 4 0 SCOP 46565 Chaperone J-domain
7 5 4 0 SCOP 50156 PDZ domain-like
6 6 3 0 SCOP 51905 FAD/NAD(P)-binding domain
6 6 2 2 SCOP 53098 Ribonuclease H-like
6 6 6 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 3 3 1 SCOP 54980 EF-G C-terminal domain-like
5 5 4 1 SCOP 50104 Translation proteins SH3-like domain
5 5 4 1 SCOP 55174 Alpha-L RNA-binding motif
5 2 2 0 SCOP 81333 F1F0 ATP synthase subunit C
5 2 2 0 SCOP 49299 PKD domain
4 4 4 2 SCOP 51735 NAD(P)-binding Rossmann-fold domains
4 4 2 3 SCOP 55120 Pseudouridine synthase
4 4 3 0 SCOP 56300 Metallo-dependent phosphatases
4 4 3 1 SCOP 75217 alpha/beta knot
4 4 2 0 SCOP 48452 TPR-like
4 4 2 0 SCOP 54001 Cysteine proteinases
4 4 3 1 SCOP 52954 Class II aaRS ABD-related
4 4 2 0 SCOP 53300 vWA-like
4 2 2 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
4 1 1 0 SCOP 63411 LuxS/MPP-like metallohydrolase
4 3 3 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
3 3 1 0 SCOP 161098 MetI-like
3 3 2 0 SCOP 56112 Protein kinase-like (PK-like)
3 3 3 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
3 3 3 0 SCOP 46785 "Winged helix" DNA-binding domain
3 3 1 0 SCOP 143800 L28p-like
3 3 2 0 SCOP 103473 MFS general substrate transporter
3 3 3 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
3 3 2 0 SCOP 55315 L30e-like
3 3 1 0 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
3 2 2 0 SCOP 57783 Zinc beta-ribbon
3 3 2 0 SCOP 54523 Pili subunits
3 3 3 0 SCOP 81301 Nucleotidyltransferase
3 3 3 1 SCOP 88697 PUA domain-like
3 3 3 0 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
3 3 3 1 SCOP 55186 ThrRS/AlaRS common domain
3 1 1 0 SCOP 55979 DNA clamp
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
2 2 1 0 SCOP 53448 Nucleotide-diphospho-sugar transferases
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 2 2 SCOP 53697 SIS domain
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 1 SCOP 55920 Creatinase/aminopeptidase
2 2 1 1 SCOP 47240 Ferritin-like
2 2 1 1 SCOP 75620 Release factor
2 2 1 2 SCOP 53383 PLP-dependent transferases
2 2 1 0 SCOP 47729 IHF-like DNA-binding proteins
2 2 1 0 SCOP 52402 Adenine nucleotide alpha hydrolases-like
2 2 2 1 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
2 2 2 1 SCOP 50129 GroES-like
2 2 1 1 SCOP 53850 Periplasmic binding protein-like II
2 2 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 2 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
2 2 1 0 SCOP 48150 DNA-glycosylase
2 2 2 0 SCOP 52096 ClpP/crotonase
2 2 2 1 SCOP 50978 WD40 repeat-like
2 2 2 0 SCOP 109604 HD-domain/PDEase-like
2 2 2 0 SCOP 88723 PIN domain-like
2 2 1 1 SCOP 51445 (Trans)glycosidases
2 2 2 0 SCOP 51306 LexA/Signal peptidase
2 2 1 1 SCOP 52972 ITPase-like
2 2 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
2 2 2 1 SCOP 52151 FabD/lysophospholipase-like
2 2 2 2 SCOP 55931 Glutamine synthetase/guanido kinase
2 2 2 0 SCOP 54631 CBS-domain pair
2 2 2 0 SCOP 46955 Putative DNA-binding domain
2 2 2 1 SCOP 50494 Trypsin-like serine proteases
2 2 2 1 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
2 2 2 0 SCOP 56349 DNA breaking-rejoining enzymes
2 2 2 0 SCOP 160246 EspE N-terminal domain-like
2 2 2 0 SCOP 81901 HCP-like
2 2 1 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
2 1 1 0 SCOP 89095 GatB/YqeY motif
2 1 1 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
2 2 1 0 SCOP 69322 Tricorn protease domain 2
2 2 2 0 SCOP 75011 3-carboxy-cis,cis-mucoante lactonizing enzyme
2 2 2 0 SCOP 47781 RuvA domain 2-like
2 2 1 1 SCOP 90123 ABC transporter transmembrane region
2 2 1 0 SCOP 46589 tRNA-binding arm
2 2 2 0 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
2 2 1 0 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
2 1 1 1 SCOP 48592 GroEL equatorial domain-like
2 2 2 0 SCOP 56176 FAD-binding/transporter-associated domain-like
2 2 2 1 SCOP 56719 Type II DNA topoisomerase
2 1 1 0 SCOP 53681 Aspartate/glutamate racemase
2 2 2 1 SCOP 48334 DNA repair protein MutS, domain III
2 2 1 1 SCOP 140990 FtsH protease domain-like
2 2 2 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
2 2 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
2 2 2 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
2 2 2 0 SCOP 53623 MurD-like peptide ligases, catalytic domain
2 1 1 0 SCOP 56053 Ribosomal protein L6
2 1 1 0 SCOP 53738 Phosphoglucomutase, first 3 domains
2 2 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
2 2 2 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
2 1 1 0 SCOP 55666 Ribonuclease PH domain 2-like
2 2 1 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
1 1 1 1 SCOP 51556 Metallo-dependent hydrolases
1 1 1 1 SCOP 56731 DNA primase core
1 1 1 1 SCOP 51569 Aldolase
1 1 1 0 SCOP 48013 NusB-like
1 1 1 1 SCOP 52317 Class I glutamine amidotransferase-like
1 1 1 0 SCOP 53271 PRTase-like
1 1 1 1 SCOP 53927 Cytidine deaminase-like
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 0 SCOP 53613 Ribokinase-like
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 52141 Uracil-DNA glycosylase-like
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 0 SCOP 51366 Ribulose-phoshate binding barrel
1 1 1 0 SCOP 54197 HIT-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 0 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 1 SCOP 46946 S13-like H2TH domain
1 1 1 0 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 1 SCOP 64182 DHH phosphoesterases
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 103657 BAR/IMD domain-like
1 1 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
1 1 1 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
1 1 1 1 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 1 SCOP 51658 Xylose isomerase-like
1 1 1 0 SCOP 47336 ACP-like
1 1 1 0 SCOP 51695 PLC-like phosphodiesterases
1 1 1 1 SCOP 75625 YebC-like
1 1 1 0 SCOP 82649 SufE/NifU
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 52980 Restriction endonuclease-like
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 0 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 0 SCOP 51283 dUTPase-like
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 0 SCOP 56281 Metallo-hydrolase/oxidoreductase
1 1 1 0 SCOP 101908 Putative isomerase YbhE
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 1 SCOP 53187 Zn-dependent exopeptidases
1 1 1 1 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
1 1 1 0 SCOP 50182 Sm-like ribonucleoproteins
1 1 1 0 SCOP 103506 Mitochondrial carrier
1 1 1 0 SCOP 52949 Macro domain-like
1 1 1 0 SCOP 50475 FMN-binding split barrel
1 1 1 1 SCOP 56801 Acetyl-CoA synthetase-like
1 1 1 1 SCOP 55469 FMN-dependent nitroreductase-like
1 1 1 1 SCOP 56672 DNA/RNA polymerases
1 1 1 0 SCOP 48613 Heme oxygenase-like
1 1 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
1 1 1 1 SCOP 54534 FKBP-like
1 1 1 0 SCOP 53649 Alkaline phosphatase-like
1 1 1 0 SCOP 55144 LigT-like
1 1 1 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 1 0 SCOP 57997 Tropomyosin
1 1 1 0 SCOP 56317 Carbon-nitrogen hydrolase
1 1 1 0 SCOP 54928 RNA-binding domain, RBD
1 1 1 0 SCOP 51126 Pectin lyase-like
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 0 SCOP 57850 RING/U-box
1 1 1 0 SCOP 55008 HMA, heavy metal-associated domain
1 1 1 0 SCOP 58113 Apolipoprotein A-I
1 1 1 0 SCOP 52058 L domain-like
1 1 1 0 SCOP 102405 MCP/YpsA-like
1 1 1 1 SCOP 51998 PFL-like glycyl radical enzymes
1 1 1 0 SCOP 47413 lambda repressor-like DNA-binding domains
1 1 1 0 SCOP 143100 TTHA1013/TTHA0281-like
1 1 1 0 SCOP 75712 Rad50 coiled-coil Zn hook
1 1 1 0 SCOP 82771 GIY-YIG endonuclease
1 1 1 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 89550 PHP domain-like
1 1 1 0 SCOP 161111 Cation efflux protein transmembrane domain-like
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 0 SCOP 54736 ClpS-like
1 1 1 1 SCOP 111304 Recombination protein RecR
1 1 1 0 SCOP 54786 YcfA/nrd intein domain
1 1 1 0 SCOP 53822 Periplasmic binding protein-like I
1 1 1 1 SCOP 69796 Thymidylate synthase-complementing protein Thy1
1 1 1 0 SCOP 56219 DNase I-like
1 1 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
1 1 1 0 SCOP 54975 Acylphosphatase/BLUF domain-like
1 1 1 0 SCOP 102829 Cell division protein ZapA-like
1 1 1 0 SCOP 101307 YutG-like
1 1 1 0 SCOP 103088 OmpA-like
1 1 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
1 1 1 0 SCOP 160537 SpoVG-like
1 1 1 1 SCOP 140478 LemA-like
1 1 1 0 SCOP 48295 TrpR-like
1 1 1 0 SCOP 140931 Fic-like
1 1 1 0 SCOP 111384 OmpH-like
1 1 1 1 SCOP 50486 FMT C-terminal domain-like
1 1 1 0 SCOP 69786 YggU-like
1 1 1 0 SCOP 81593 Nucleotidyltransferase substrate binding subunit/domain
1 1 1 0 SCOP 50331 MOP-like
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 0 SCOP 56024 Phospholipase D/nuclease
1 1 1 0 SCOP 69754 Ribosome binding protein Y (YfiA homologue)
1 1 1 0 SCOP 82171 DPP6 N-terminal domain-like
1 1 1 0 SCOP 158791 MgtE N-terminal domain-like
1 1 1 0 SCOP 102198 Putative cyclase
1 1 1 0 SCOP 57667 beta-beta-alpha zinc fingers
1 1 1 0 SCOP 69819 MTH1598-like
1 1 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
1 1 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
1 1 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 1 0 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
1 1 1 0 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 0 SCOP 50960 TolB, C-terminal domain
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 69318 Integrin alpha N-terminal domain
1 1 1 0 SCOP 81923 Double Clp-N motif
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 69304 Tricorn protease N-terminal domain
1 1 1 0 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 48019 post-AAA+ oligomerization domain-like
1 1 1 0 SCOP 109635 DnaK suppressor protein DksA, alpha-hairpin domain
1 1 1 0 SCOP 118116 DNA mismatch repair protein MutL
1 1 1 0 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 0 SCOP 58064 Influenza hemagglutinin (stalk)
1 1 1 0 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 0 SCOP 81665 Calcium ATPase, transmembrane domain M
1 1 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 116726 TrkA C-terminal domain-like
1 1 1 1 SCOP 56037 PheT/TilS domain
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 161093 MgtE membrane domain-like
1 1 1 1 SCOP 55307 Tubulin C-terminal domain-like
1 1 1 0 SCOP 81383 F-box domain
1 1 1 1 SCOP 54826 Enolase N-terminal domain-like
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 81891 Poly A polymerase C-terminal region-like
1 1 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
1 1 1 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
1 1 1 0 SCOP 81631 PAP/OAS1 substrate-binding domain
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
1 1 1 0 SCOP 63418 MurE/MurF N-terminal domain
1 1 1 0 SCOP 47823 lambda integrase-like, N-terminal domain
1 1 1 0 SCOP 54768 dsRNA-binding domain-like
1 1 1 0 SCOP 141259 CarD-like
1 1 1 0 SCOP 53155 Methylated DNA-protein cysteine methyltransferase domain
1 1 1 0 SCOP 140860 Pseudo ankyrin repeat-like
1 1 1 0 SCOP 117892 Band 7/SPFH domain
1 1 1 0 SCOP 54752 RecA protein, C-terminal domain
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 0 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 1 SCOP 55271 DNA repair protein MutS, domain I
1 1 1 0 SCOP 81271 TGS-like
1 1 1 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 0 SCOP 140864 TROVE domain-like
1 1 1 0 SCOP 54368 Glutamine synthetase, N-terminal domain
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 1 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 1 0 SCOP 81653 Calcium ATPase, transduction domain A
1 1 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
1 1 1 0 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 1 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 0 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 0 SCOP 53150 DNA repair protein MutS, domain II
1 1 1 1 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3

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