SUPERFAMILY 1.75 HMM library and genome assignments server

Ictidomys tridecemlineatus 76_2 superfamily assignments

Taxonomy
Taxonomy browser entry

Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Sciuridae; Xerinae; Marmotini; Ictidomys; Ictidomys tridecemlineatus

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 20000 total
14693 (73 %) with assignment
513 average length
45 % amino acid coverage
Domains: 28276 total
1076 unique superfamilies
1305 unique families
314 average length
26.3 average superfamily size
96 % formed by duplication
Domain combinations: 1411 domain pairs
4504 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

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Superfamilies