SUPERFAMILY 1.75 HMM library and genome assignments server

syncytium symbiont of Diaphorina citri superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Proteobacteria; Betaproteobacteria; unclassified Betaproteobacteria; Candidatus Profftella; Candidatus Profftella armatura

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Domain assignments


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Assignment statistics

Sequences: 372 total
334 (90 %) with assignment
365 average length
78 % amino acid coverage
Domains: 579 total
284 unique superfamilies
192 unique families
317 average length
2 average superfamily size
51 % formed by duplication
Domain combinations: 157 domain pairs
272 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

42 39 23 7 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
22 16 12 3 SCOP 50249 Nucleic acid-binding proteins
19 4 4 0 SCOP 47336 ACP-like
15 10 9 4 SCOP 51735 NAD(P)-binding Rossmann-fold domains
15 5 4 1 SCOP 53901 Thiolase-like
12 12 10 1 SCOP 55681 Class II aaRS and biotin synthetases
10 9 6 3 SCOP 51905 FAD/NAD(P)-binding domain
10 10 9 1 SCOP 52374 Nucleotidylyl transferase
10 10 7 3 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
10 9 7 2 SCOP 50447 Translation proteins
9 8 7 5 SCOP 54211 Ribosomal protein S5 domain 2-like
8 4 3 1 SCOP 53067 Actin-like ATPase domain
7 7 6 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 6 3 1 SCOP 52833 Thioredoxin-like
6 6 4 3 SCOP 52402 Adenine nucleotide alpha hydrolases-like
6 6 2 2 SCOP 52096 ClpP/crotonase
6 3 2 1 SCOP 54980 EF-G C-terminal domain-like
5 5 4 2 SCOP 50104 Translation proteins SH3-like domain
5 5 3 3 SCOP 55120 Pseudouridine synthase
5 5 3 1 SCOP 55174 Alpha-L RNA-binding motif
5 5 4 1 SCOP 54862 4Fe-4S ferredoxins
5 5 2 2 SCOP 102114 Radical SAM enzymes
4 2 2 2 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
4 4 2 1 SCOP 53098 Ribonuclease H-like
4 3 2 1 SCOP 52777 CoA-dependent acyltransferases
3 3 3 1 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
3 3 1 2 SCOP 53383 PLP-dependent transferases
3 3 3 2 SCOP 75217 alpha/beta knot
3 3 3 2 SCOP 54292 2Fe-2S ferredoxin-like
3 3 3 0 SCOP 52954 Class II aaRS ABD-related
3 3 2 1 SCOP 51230 Single hybrid motif
3 3 3 0 SCOP 88697 PUA domain-like
3 2 2 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
3 2 2 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
3 3 2 0 SCOP 46589 tRNA-binding arm
3 1 1 0 SCOP 55979 DNA clamp
3 3 2 2 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
3 1 1 1 SCOP 55973 S-adenosylmethionine synthetase
3 3 2 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
2 2 2 2 SCOP 56059 Glutathione synthetase ATP-binding domain-like
2 2 2 0 SCOP 48013 NusB-like
2 2 2 1 SCOP 53927 Cytidine deaminase-like
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 2 1 SCOP 53790 Tetrapyrrole methylase
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 2 SCOP 47240 Ferritin-like
2 2 1 0 SCOP 143800 L28p-like
2 2 1 1 SCOP 75620 Release factor
2 2 2 2 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
2 2 2 1 SCOP 53850 Periplasmic binding protein-like II
2 2 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 1 1 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
2 2 1 1 SCOP 89360 HesB-like domain
2 2 2 1 SCOP 50715 Ribosomal protein L25-like
2 2 2 1 SCOP 142695 RibA-like
2 2 1 0 SCOP 81343 Fumarate reductase respiratory complex transmembrane subunits
2 2 2 1 SCOP 52151 FabD/lysophospholipase-like
2 2 1 0 SCOP 54631 CBS-domain pair
2 2 2 2 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
2 2 2 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
2 2 2 1 SCOP 46565 Chaperone J-domain
2 2 2 1 SCOP 55186 ThrRS/AlaRS common domain
2 2 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
2 2 1 0 SCOP 56176 FAD-binding/transporter-associated domain-like
2 1 1 0 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
2 2 1 0 SCOP 48019 post-AAA+ oligomerization domain-like
2 2 2 1 SCOP 56719 Type II DNA topoisomerase
2 2 2 1 SCOP 52210 Succinyl-CoA synthetase domains
2 2 2 0 SCOP 56037 PheT/TilS domain
2 2 2 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 2 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
2 2 2 0 SCOP 54768 dsRNA-binding domain-like
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 1 1 0 SCOP 55124 Nitrite/Sulfite reductase N-terminal domain-like
2 2 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 1 SCOP 81271 TGS-like
2 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
2 1 1 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
2 1 1 0 SCOP 55666 Ribonuclease PH domain 2-like
2 2 1 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 1 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
1 1 1 1 SCOP 51556 Metallo-dependent hydrolases
1 1 1 1 SCOP 56731 DNA primase core
1 1 1 0 SCOP 53474 alpha/beta-Hydrolases
1 1 1 0 SCOP 161098 MetI-like
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 0 SCOP 53613 Ribokinase-like
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 52141 Uracil-DNA glycosylase-like
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 1 SCOP 56420 Peptide deformylase
1 1 1 0 SCOP 54197 HIT-like
1 1 1 0 SCOP 82607 YbaB-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 1 SCOP 55920 Creatinase/aminopeptidase
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 1 SCOP 46946 S13-like H2TH domain
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 56300 Metallo-dependent phosphatases
1 1 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
1 1 1 1 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
1 1 1 1 SCOP 53597 Dihydrofolate reductase-like
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 0 SCOP 46785 "Winged helix" DNA-binding domain
1 1 1 0 SCOP 100950 NagB/RpiA/CoA transferase-like
1 1 1 1 SCOP 75625 YebC-like
1 1 1 1 SCOP 82649 SufE/NifU
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 52980 Restriction endonuclease-like
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 0 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
1 1 1 0 SCOP 50129 GroES-like
1 1 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 1 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 53633 Carbamate kinase-like
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
1 1 1 1 SCOP 55821 YrdC/RibB
1 1 1 0 SCOP 51283 dUTPase-like
1 1 1 1 SCOP 48150 DNA-glycosylase
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 1 SCOP 56770 HydA/Nqo6-like
1 1 1 0 SCOP 55811 Nudix
1 1 1 0 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 0 SCOP 54285 MoaD/ThiS
1 1 1 1 SCOP 56655 Carbohydrate phosphatase
1 1 1 1 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 0 SCOP 51395 FMN-linked oxidoreductases
1 1 1 0 SCOP 82657 BolA-like
1 1 1 0 SCOP 64307 SirA-like
1 1 1 1 SCOP 52121 Lumazine synthase
1 1 1 0 SCOP 48576 Terpenoid synthases
1 1 1 1 SCOP 81452 Cytochrome c oxidase subunit III-like
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 111148 YggX-like
1 1 1 1 SCOP 54995 Ribosomal protein S6
1 1 1 1 SCOP 53187 Zn-dependent exopeptidases
1 1 1 1 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
1 1 1 0 SCOP 49764 HSP20-like chaperones
1 1 1 0 SCOP 52949 Macro domain-like
1 1 1 1 SCOP 56801 Acetyl-CoA synthetase-like
1 1 1 0 SCOP 109604 HD-domain/PDEase-like
1 1 1 0 SCOP 55315 L30e-like
1 1 1 1 SCOP 48256 Citrate synthase
1 1 1 0 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
1 1 1 0 SCOP 88723 PIN domain-like
1 1 1 1 SCOP 53328 Formyltransferase
1 1 1 0 SCOP 54534 FKBP-like
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 1 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 1 SCOP 81442 Cytochrome c oxidase subunit I-like
1 1 1 0 SCOP 53800 Chelatase
1 1 1 1 SCOP 55931 Glutamine synthetase/guanido kinase
1 1 1 1 SCOP 143243 Nqo5-like
1 1 1 1 SCOP 51998 PFL-like glycyl radical enzymes
1 1 1 0 SCOP 46955 Putative DNA-binding domain
1 1 1 1 SCOP 52016 LeuD/IlvD-like
1 1 1 0 SCOP 57783 Zinc beta-ribbon
1 1 1 0 SCOP 51679 Bacterial luciferase-like
1 1 1 1 SCOP 49503 Cupredoxins
1 1 1 0 SCOP 81301 Nucleotidyltransferase
1 1 1 0 SCOP 89550 PHP domain-like
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 1 SCOP 56762 HydB/Nqo4-like
1 1 1 1 SCOP 52467 DHS-like NAD/FAD-binding domain
1 1 1 0 SCOP 54736 ClpS-like
1 1 1 0 SCOP 53822 Periplasmic binding protein-like I
1 1 1 1 SCOP 53732 Aconitase iron-sulfur domain
1 1 1 0 SCOP 69065 RNase III domain-like
1 1 1 1 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 1 SCOP 143456 VC0467-like
1 1 1 1 SCOP 48173 Cryptochrome/photolyase FAD-binding domain
1 1 1 0 SCOP 52425 Cryptochrome/photolyase, N-terminal domain
1 1 1 0 SCOP 102400 DNA polymerase III chi subunit
1 1 1 0 SCOP 89095 GatB/YqeY motif
1 1 1 0 SCOP 55826 YbaK/ProRS associated domain
1 1 1 0 SCOP 103025 Folate-binding domain
1 1 1 0 SCOP 50037 C-terminal domain of transcriptional repressors
1 1 1 1 SCOP 117457 FumA C-terminal domain-like
1 1 1 0 SCOP 50486 FMT C-terminal domain-like
1 1 1 0 SCOP 64076 MTH938-like
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 1 SCOP 56024 Phospholipase D/nuclease
1 1 1 0 SCOP 47781 RuvA domain 2-like
1 1 1 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
1 1 1 0 SCOP 50346 PRC-barrel domain
1 1 1 0 SCOP 160975 AF1531-like
1 1 1 1 SCOP 46548 alpha-helical ferredoxin
1 1 1 0 SCOP 47616 GST C-terminal domain-like
1 1 1 1 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
1 1 1 1 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 0 SCOP 90123 ABC transporter transmembrane region
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 0 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
1 1 1 1 SCOP 51246 Rudiment single hybrid motif
1 1 1 1 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 1 SCOP 52922 TK C-terminal domain-like
1 1 1 0 SCOP 81573 F1F0 ATP synthase subunit B, membrane domain
1 1 1 0 SCOP 109635 DnaK suppressor protein DksA, alpha-hairpin domain
1 1 1 1 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 1 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 1 SCOP 52440 PreATP-grasp domain
1 1 1 1 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 1 SCOP 81464 Cytochrome c oxidase subunit II-like, transmembrane region
1 1 1 1 SCOP 140990 FtsH protease domain-like
1 1 1 0 SCOP 142984 Nqo1 middle domain-like
1 1 1 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
1 1 1 0 SCOP 54826 Enolase N-terminal domain-like
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
1 1 1 1 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 0 SCOP 47144 HSC20 (HSCB), C-terminal oligomerisation domain
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 0 SCOP 46604 Epsilon subunit of F1F0-ATP synthase C-terminal domain
1 1 1 0 SCOP 52113 BRCT domain
1 1 1 1 SCOP 54373 FAD-linked reductases, C-terminal domain
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 0 SCOP 140490 Nqo1C-terminal domain-like
1 1 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 0 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
1 1 1 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 1 SCOP 142019 Nqo1 FMN-binding domain-like
1 1 1 1 SCOP 55261 GAD domain-like
1 1 1 1 SCOP 110942 HSP90 C-terminal domain
1 1 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 1 0 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 1 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 1 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 1 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 82829 MesJ substrate recognition domain-like
1 1 1 0 SCOP 46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain

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