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Mycoplasma haemocanis str. Illinois superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Tenericutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma; Mycoplasma haemocanis; Mycoplasma haemocanis str. Illinois

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Domain assignments


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Assignment statistics

Sequences: 1156 total
276 (24 %) with assignment
242 average length
28 % amino acid coverage
Domains: 406 total
219 unique superfamilies
91 unique families
283 average length
1.9 average superfamily size
46 % formed by duplication
Domain combinations: 96 domain pairs
216 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

46 43 26 7 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
16 16 1 0 SCOP 116734 DNA methylase specificity domain
14 12 8 2 SCOP 50249 Nucleic acid-binding proteins
11 11 9 1 SCOP 55681 Class II aaRS and biotin synthetases
10 10 8 1 SCOP 52374 Nucleotidylyl transferase
7 6 6 2 SCOP 50447 Translation proteins
6 3 3 2 SCOP 53067 Actin-like ATPase domain
6 6 3 0 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
6 6 5 2 SCOP 54211 Ribosomal protein S5 domain 2-like
6 6 5 0 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
5 5 3 2 SCOP 53271 PRTase-like
4 3 2 0 SCOP 161098 MetI-like
4 4 3 1 SCOP 50104 Translation proteins SH3-like domain
4 4 2 0 SCOP 53098 Ribonuclease H-like
4 4 3 0 SCOP 52954 Class II aaRS ABD-related
4 2 2 1 SCOP 54980 EF-G C-terminal domain-like
3 3 3 1 SCOP 52317 Class I glutamine amidotransferase-like
3 3 3 2 SCOP 51735 NAD(P)-binding Rossmann-fold domains
3 3 2 0 SCOP 56784 HAD-like
3 3 3 1 SCOP 55174 Alpha-L RNA-binding motif
3 3 2 1 SCOP 48557 L-aspartase-like
3 3 2 1 SCOP 109604 HD-domain/PDEase-like
3 2 2 0 SCOP 57783 Zinc beta-ribbon
3 3 3 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
3 1 1 1 SCOP 55973 S-adenosylmethionine synthetase
3 1 1 0 SCOP 53738 Phosphoglucomutase, first 3 domains
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 2 0 SCOP 51905 FAD/NAD(P)-binding domain
2 2 2 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 0 SCOP 64182 DHH phosphoesterases
2 2 1 0 SCOP 52218 Flavoproteins
2 2 1 0 SCOP 143800 L28p-like
2 2 1 1 SCOP 53383 PLP-dependent transferases
2 2 2 1 SCOP 75217 alpha/beta knot
2 2 2 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
2 2 2 1 SCOP 52402 Adenine nucleotide alpha hydrolases-like
2 2 2 0 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
2 2 1 0 SCOP 53850 Periplasmic binding protein-like II
2 2 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 2 1 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
2 2 2 0 SCOP 56281 Metallo-hydrolase/oxidoreductase
2 2 1 0 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
2 2 1 0 SCOP 51430 NAD(P)-linked oxidoreductase
2 2 1 0 SCOP 50494 Trypsin-like serine proteases
2 2 2 0 SCOP 89550 PHP domain-like
2 2 2 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
2 1 1 0 SCOP 56024 Phospholipase D/nuclease
2 2 2 0 SCOP 47781 RuvA domain 2-like
2 2 2 1 SCOP 56719 Type II DNA topoisomerase
2 2 2 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 2 0 SCOP 54768 dsRNA-binding domain-like
2 1 1 0 SCOP 56053 Ribosomal protein L6
2 2 2 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
2 2 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 1 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
1 1 1 0 SCOP 51556 Metallo-dependent hydrolases
1 1 1 0 SCOP 56731 DNA primase core
1 1 1 1 SCOP 51569 Aldolase
1 1 1 0 SCOP 48013 NusB-like
1 1 1 0 SCOP 55594 HPr-like
1 1 1 1 SCOP 53167 Purine and uridine phosphorylases
1 1 1 0 SCOP 74982 Small protein B (SmpB)
1 1 1 0 SCOP 53613 Ribokinase-like
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 0 SCOP 143597 YojJ-like
1 1 1 0 SCOP 56112 Protein kinase-like (PK-like)
1 1 1 1 SCOP 53697 SIS domain
1 1 1 0 SCOP 52833 Thioredoxin-like
1 1 1 0 SCOP 111331 NAD kinase/diacylglycerol kinase-like
1 1 1 0 SCOP 54197 HIT-like
1 1 1 0 SCOP 82607 YbaB-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 0 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 0 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 1 SCOP 55920 Creatinase/aminopeptidase
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 1 SCOP 46946 S13-like H2TH domain
1 1 1 0 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 55120 Pseudouridine synthase
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 56300 Metallo-dependent phosphatases
1 1 1 1 SCOP 53784 Phosphofructokinase
1 1 1 0 SCOP 89447 AbrB/MazE/MraZ-like
1 1 1 1 SCOP 47240 Ferritin-like
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 118010 TM1457-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 1 SCOP 51658 Xylose isomerase-like
1 1 1 0 SCOP 46785 "Winged helix" DNA-binding domain
1 1 1 1 SCOP 75620 Release factor
1 1 1 0 SCOP 103473 MFS general substrate transporter
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 0 SCOP 82649 SufE/NifU
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 52980 Restriction endonuclease-like
1 1 1 0 SCOP 47729 IHF-like DNA-binding proteins
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 0 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
1 1 1 0 SCOP 109755 PhoU-like
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 53633 Carbamate kinase-like
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 0 SCOP 55821 YrdC/RibB
1 1 1 0 SCOP 51261 Duplicated hybrid motif
1 1 1 1 SCOP 53720 ALDH-like
1 1 1 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 56796 Dehydroquinate synthase-like
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 1 SCOP 53187 Zn-dependent exopeptidases
1 1 1 0 SCOP 88723 PIN domain-like
1 1 1 0 SCOP 54534 FKBP-like
1 1 1 0 SCOP 46579 Prefoldin
1 1 1 1 SCOP 53649 Alkaline phosphatase-like
1 1 1 0 SCOP 55781 GAF domain-like
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 1 SCOP 55931 Glutamine synthetase/guanido kinase
1 1 1 0 SCOP 54631 CBS-domain pair
1 1 1 1 SCOP 53795 PEP carboxykinase-like
1 1 1 1 SCOP 51998 PFL-like glycyl radical enzymes
1 1 1 1 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
1 1 1 0 SCOP 54736 ClpS-like
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 0 SCOP 69065 RNase III domain-like
1 1 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 88697 PUA domain-like
1 1 1 0 SCOP 89095 GatB/YqeY motif
1 1 1 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
1 1 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
1 1 1 0 SCOP 55604 Glucose permease domain IIB
1 1 1 0 SCOP 48295 TrpR-like
1 1 1 0 SCOP 75138 HprK N-terminal domain-like
1 1 1 0 SCOP 50331 MOP-like
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
1 1 1 0 SCOP 158791 MgtE N-terminal domain-like
1 1 1 0 SCOP 46565 Chaperone J-domain
1 1 1 0 SCOP 55186 ThrRS/AlaRS common domain
1 1 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 1 0 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 0 SCOP 90123 ABC transporter transmembrane region
1 1 1 0 SCOP 46589 tRNA-binding arm
1 1 1 0 SCOP 55979 DNA clamp
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 52009 Phosphohistidine domain
1 1 1 0 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 0 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 116726 TrkA C-terminal domain-like
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 161093 MgtE membrane domain-like
1 1 1 1 SCOP 140990 FtsH protease domain-like
1 1 1 1 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
1 1 1 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
1 1 1 1 SCOP 54826 Enolase N-terminal domain-like
1 1 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 46934 UBA-like
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 0 SCOP 52113 BRCT domain
1 1 1 0 SCOP 47831 Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
1 1 1 0 SCOP 54752 RecA protein, C-terminal domain
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 0 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 1 SCOP 81271 TGS-like
1 1 1 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 0 SCOP 57774 Microbial and mitochondrial ADK, insert "zinc finger" domain
1 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
1 1 1 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 1 1 SCOP 64158 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 1 0 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 0 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 0 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 0 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 102741 Obg GTP-binding protein C-terminal domain

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