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Buchnera aphidicola BCc superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Buchnera; Buchnera aphidicola; Buchnera aphidicola (Cinara cedri); Buchnera aphidicola BCc

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Domain assignments


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Assignment statistics

Sequences: 362 total
331 (91 %) with assignment
330 average length
83 % amino acid coverage
Domains: 545 total
290 unique superfamilies
207 unique families
300 average length
1.9 average superfamily size
47 % formed by duplication
Domain combinations: 154 domain pairs
271 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

41 37 25 7 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
25 16 12 4 SCOP 50249 Nucleic acid-binding proteins
12 6 3 2 SCOP 53067 Actin-like ATPase domain
12 10 9 5 SCOP 54211 Ribosomal protein S5 domain 2-like
12 12 9 1 SCOP 55681 Class II aaRS and biotin synthetases
11 11 7 4 SCOP 51735 NAD(P)-binding Rossmann-fold domains
10 10 10 1 SCOP 52374 Nucleotidylyl transferase
8 4 4 4 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
8 7 7 2 SCOP 50447 Translation proteins
6 6 3 4 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
6 6 3 1 SCOP 53098 Ribonuclease H-like
6 6 6 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 3 3 1 SCOP 54980 EF-G C-terminal domain-like
5 5 2 3 SCOP 51569 Aldolase
5 5 4 2 SCOP 50104 Translation proteins SH3-like domain
5 5 3 3 SCOP 55120 Pseudouridine synthase
5 5 3 1 SCOP 55174 Alpha-L RNA-binding motif
5 5 3 4 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
4 4 2 1 SCOP 52833 Thioredoxin-like
4 4 1 3 SCOP 53383 PLP-dependent transferases
4 4 2 0 SCOP 102114 Radical SAM enzymes
4 3 3 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
3 3 3 0 SCOP 51905 FAD/NAD(P)-binding domain
3 3 1 2 SCOP 51366 Ribulose-phoshate binding barrel
3 3 3 2 SCOP 52402 Adenine nucleotide alpha hydrolases-like
3 3 2 2 SCOP 53633 Carbamate kinase-like
3 3 2 0 SCOP 89360 HesB-like domain
3 2 2 1 SCOP 52096 ClpP/crotonase
3 3 1 0 SCOP 75169 DsrEFH-like
3 2 2 1 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
3 2 2 0 SCOP 55021 ACT-like
3 2 2 1 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
3 3 2 0 SCOP 46589 tRNA-binding arm
3 1 1 0 SCOP 55979 DNA clamp
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
2 1 1 1 SCOP 56059 Glutathione synthetase ATP-binding domain-like
2 2 2 1 SCOP 52317 Class I glutamine amidotransferase-like
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 2 1 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
2 2 1 1 SCOP 53137 Translational machinery components
2 2 1 0 SCOP 143800 L28p-like
2 2 1 1 SCOP 75620 Release factor
2 2 1 2 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
2 2 2 2 SCOP 52980 Restriction endonuclease-like
2 2 1 1 SCOP 47729 IHF-like DNA-binding proteins
2 2 2 1 SCOP 53850 Periplasmic binding protein-like II
2 2 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 2 0 SCOP 54862 4Fe-4S ferredoxins
2 2 2 1 SCOP 50715 Ribosomal protein L25-like
2 2 2 0 SCOP 54292 2Fe-2S ferredoxin-like
2 2 1 1 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
2 2 1 0 SCOP 82657 BolA-like
2 1 1 1 SCOP 51726 UROD/MetE-like
2 1 1 1 SCOP 54506 Diaminopimelate epimerase-like
2 2 2 0 SCOP 52954 Class II aaRS ABD-related
2 1 1 0 SCOP 46955 Putative DNA-binding domain
2 2 2 0 SCOP 52016 LeuD/IlvD-like
2 2 2 2 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
2 2 2 0 SCOP 51230 Single hybrid motif
2 2 2 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
2 2 2 0 SCOP 81301 Nucleotidyltransferase
2 1 1 1 SCOP 53901 Thiolase-like
2 2 2 1 SCOP 46565 Chaperone J-domain
2 2 2 1 SCOP 55186 ThrRS/AlaRS common domain
2 2 2 1 SCOP 52777 CoA-dependent acyltransferases
2 2 1 0 SCOP 90123 ABC transporter transmembrane region
2 2 1 1 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
2 2 1 0 SCOP 48019 post-AAA+ oligomerization domain-like
2 2 2 1 SCOP 56719 Type II DNA topoisomerase
2 2 2 1 SCOP 52922 TK C-terminal domain-like
2 1 1 1 SCOP 52440 PreATP-grasp domain
2 2 2 0 SCOP 56037 PheT/TilS domain
2 2 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
2 2 2 0 SCOP 81891 Poly A polymerase C-terminal region-like
2 2 2 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 2 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
2 2 2 1 SCOP 54768 dsRNA-binding domain-like
2 1 1 0 SCOP 47794 Rad51 N-terminal domain-like
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
2 1 1 0 SCOP 55666 Ribonuclease PH domain 2-like
2 2 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 1 SCOP 51556 Metallo-dependent hydrolases
1 1 1 1 SCOP 56731 DNA primase core
1 1 1 0 SCOP 53474 alpha/beta-Hydrolases
1 1 1 1 SCOP 48013 NusB-like
1 1 1 1 SCOP 53271 PRTase-like
1 1 1 1 SCOP 53927 Cytidine deaminase-like
1 1 1 0 SCOP 53790 Tetrapyrrole methylase
1 1 1 0 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 52141 Uracil-DNA glycosylase-like
1 1 1 1 SCOP 56420 Peptide deformylase
1 1 1 1 SCOP 53697 SIS domain
1 1 1 1 SCOP 56784 HAD-like
1 1 1 0 SCOP 82607 YbaB-like
1 1 1 1 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 1 SCOP 55920 Creatinase/aminopeptidase
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 1 SCOP 46946 S13-like H2TH domain
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
1 1 1 1 SCOP 53784 Phosphofructokinase
1 1 1 1 SCOP 52218 Flavoproteins
1 1 1 1 SCOP 141091 L21p-like
1 1 1 1 SCOP 110324 Ribosomal L27 protein-like
1 1 1 1 SCOP 51658 Xylose isomerase-like
1 1 1 1 SCOP 100950 NagB/RpiA/CoA transferase-like
1 1 1 0 SCOP 47336 ACP-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 75625 YebC-like
1 1 1 1 SCOP 82649 SufE/NifU
1 1 1 1 SCOP 75217 alpha/beta knot
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 0 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
1 1 1 1 SCOP 50129 GroES-like
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 1 SCOP 51730 FAD-linked oxidoreductase
1 1 1 1 SCOP 48557 L-aspartase-like
1 1 1 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
1 1 1 1 SCOP 51161 Trimeric LpxA-like enzymes
1 1 1 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 1 SCOP 53720 ALDH-like
1 1 1 0 SCOP 51283 dUTPase-like
1 1 1 1 SCOP 48150 DNA-glycosylase
1 1 1 1 SCOP 56770 HydA/Nqo6-like
1 1 1 1 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
1 1 1 0 SCOP 55811 Nudix
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 0 SCOP 56655 Carbohydrate phosphatase
1 1 1 1 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 1 SCOP 53254 Phosphoglycerate mutase-like
1 1 1 1 SCOP 55205 EPT/RTPC-like
1 1 1 0 SCOP 55229 Cell division protein MinE topological specificity domain
1 1 1 0 SCOP 51395 FMN-linked oxidoreductases
1 1 1 0 SCOP 55298 YjgF-like
1 1 1 1 SCOP 52304 Type II 3-dehydroquinate dehydratase
1 1 1 0 SCOP 46689 Homeodomain-like
1 1 1 0 SCOP 117130 CsrA-like
1 1 1 0 SCOP 64307 SirA-like
1 1 1 1 SCOP 81452 Cytochrome c oxidase subunit III-like
1 1 1 0 SCOP 117991 YbeD/HP0495-like
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 1 SCOP 56796 Dehydroquinate synthase-like
1 1 1 1 SCOP 51419 PLP-binding barrel
1 1 1 0 SCOP 111148 YggX-like
1 1 1 1 SCOP 54995 Ribosomal protein S6
1 1 1 1 SCOP 53187 Zn-dependent exopeptidases
1 1 1 1 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
1 1 1 0 SCOP 55387 Frataxin/Nqo15-like
1 1 1 1 SCOP 50182 Sm-like ribonucleoproteins
1 1 1 0 SCOP 109604 HD-domain/PDEase-like
1 1 1 1 SCOP 56672 DNA/RNA polymerases
1 1 1 0 SCOP 88723 PIN domain-like
1 1 1 1 SCOP 53328 Formyltransferase
1 1 1 0 SCOP 54534 FKBP-like
1 1 1 1 SCOP 51306 LexA/Signal peptidase
1 1 1 1 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 0 SCOP 52151 FabD/lysophospholipase-like
1 1 1 1 SCOP 81442 Cytochrome c oxidase subunit I-like
1 1 1 0 SCOP 141734 HisI-like
1 1 1 0 SCOP 54631 CBS-domain pair
1 1 1 0 SCOP 143243 Nqo5-like
1 1 1 0 SCOP 57783 Zinc beta-ribbon
1 1 1 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
1 1 1 1 SCOP 49503 Cupredoxins
1 1 1 0 SCOP 89550 PHP domain-like
1 1 1 0 SCOP 54913 GlnB-like
1 1 1 1 SCOP 56762 HydB/Nqo4-like
1 1 1 1 SCOP 52467 DHS-like NAD/FAD-binding domain
1 1 1 0 SCOP 54736 ClpS-like
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 1 SCOP 53732 Aconitase iron-sulfur domain
1 1 1 0 SCOP 69065 RNase III domain-like
1 1 1 1 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 1 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
1 1 1 0 SCOP 102829 Cell division protein ZapA-like
1 1 1 1 SCOP 88697 PUA domain-like
1 1 1 0 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 103088 OmpA-like
1 1 1 1 SCOP 103025 Folate-binding domain
1 1 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
1 1 1 1 SCOP 52335 Methylglyoxal synthase-like
1 1 1 1 SCOP 48295 TrpR-like
1 1 1 0 SCOP 101801 Surface presentation of antigens (SPOA)
1 1 1 0 SCOP 50486 FMT C-terminal domain-like
1 1 1 0 SCOP 56925 OMPA-like
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 0 SCOP 47781 RuvA domain 2-like
1 1 1 0 SCOP 50974 Nitrous oxide reductase, N-terminal domain
1 1 1 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
1 1 1 0 SCOP 50346 PRC-barrel domain
1 1 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
1 1 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 1 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
1 1 1 1 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
1 1 1 1 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 0 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
1 1 1 1 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 56176 FAD-binding/transporter-associated domain-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 160443 SMR domain-like
1 1 1 0 SCOP 160544 EscU C-terminal domain-like
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 63848 Cell-division inhibitor MinC, C-terminal domain
1 1 1 0 SCOP 52935 PK C-terminal domain-like
1 1 1 1 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 48029 FliG
1 1 1 0 SCOP 81464 Cytochrome c oxidase subunit II-like, transmembrane region
1 1 1 1 SCOP 55307 Tubulin C-terminal domain-like
1 1 1 1 SCOP 140990 FtsH protease domain-like
1 1 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
1 1 1 0 SCOP 142984 Nqo1 middle domain-like
1 1 1 1 SCOP 50621 Alanine racemase C-terminal domain-like
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
1 1 1 1 SCOP 54826 Enolase N-terminal domain-like
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
1 1 1 0 SCOP 68912 Rho N-terminal domain-like
1 1 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
1 1 1 0 SCOP 63380 Riboflavin synthase domain-like
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 0 SCOP 47144 HSC20 (HSCB), C-terminal oligomerisation domain
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
1 1 1 0 SCOP 141259 CarD-like
1 1 1 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
1 1 1 0 SCOP 140490 Nqo1C-terminal domain-like
1 1 1 1 SCOP 55031 Bacterial exopeptidase dimerisation domain
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 1 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 1 SCOP 81271 TGS-like
1 1 1 1 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 1 SCOP 142019 Nqo1 FMN-binding domain-like
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 1 1 SCOP 110942 HSP90 C-terminal domain
1 1 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 1 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 0 SCOP 143517 TRCF domain-like
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 1 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 117023 DNA primase DnaG, C-terminal domain
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 0 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 1 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 82829 MesJ substrate recognition domain-like
1 1 1 0 SCOP 46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain

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