SUPERFAMILY 1.75 HMM library and genome assignments server

Shewanella loihica PV-4 superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella loihica; Shewanella loihica PV-4

Downloads
Fasta format sequences
Domain assignments


Jump to [ Top of page · Domain assignments ]

Assignment statistics

Sequences: 3859 total
2765 (72 %) with assignment
340 average length
64 % amino acid coverage
Domains: 4216 total
764 unique superfamilies
744 unique families
304 average length
5.5 average superfamily size
82 % formed by duplication
Domain combinations: 544 domain pairs
1227 unique architectures

Jump to [ Top of page · Assignment statistics ]

Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies