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Candidatus Hodgkinia cicadicola Dsem superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; unclassified Rhizobiales; Candidatus Hodgkinia; Candidatus Hodgkinia cicadicola; Candidatus Hodgkinia cicadicola Dsem

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 169 total
125 (74 %) with assignment
258 average length
73 % amino acid coverage
Domains: 170 total
118 unique superfamilies
31 unique families
253 average length
1.4 average superfamily size
31 % formed by duplication
Domain combinations: 40 domain pairs
111 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

9 9 6 1 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
5 5 3 1 SCOP 50249 Nucleic acid-binding proteins
5 5 5 1 SCOP 52374 Nucleotidylyl transferase
5 4 4 1 SCOP 54211 Ribosomal protein S5 domain 2-like
5 5 3 1 SCOP 55681 Class II aaRS and biotin synthetases
4 4 1 2 SCOP 53383 PLP-dependent transferases
3 3 2 0 SCOP 53790 Tetrapyrrole methylase
3 3 3 0 SCOP 51905 FAD/NAD(P)-binding domain
3 3 2 0 SCOP 52402 Adenine nucleotide alpha hydrolases-like
3 2 2 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
3 3 3 1 SCOP 50447 Translation proteins
3 2 2 0 SCOP 63380 Riboflavin synthase domain-like
2 2 2 0 SCOP 52317 Class I glutamine amidotransferase-like
2 2 1 1 SCOP 51366 Ribulose-phoshate binding barrel
2 2 2 1 SCOP 50104 Translation proteins SH3-like domain
2 2 1 1 SCOP 53137 Translational machinery components
2 2 1 0 SCOP 55120 Pseudouridine synthase
2 1 1 1 SCOP 53067 Actin-like ATPase domain
2 2 2 0 SCOP 54862 4Fe-4S ferredoxins
2 2 2 0 SCOP 46626 Cytochrome c
2 2 2 0 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
2 1 1 0 SCOP 54980 EF-G C-terminal domain-like
2 1 1 0 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
2 1 1 0 SCOP 55124 Nitrite/Sulfite reductase N-terminal domain-like
2 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
1 1 1 0 SCOP 53474 alpha/beta-Hydrolases
1 1 1 0 SCOP 53271 PRTase-like
1 1 1 0 SCOP 53927 Cytidine deaminase-like
1 1 1 0 SCOP 57829 Zn-binding ribosomal proteins
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 0 SCOP 56420 Peptide deformylase
1 1 1 0 SCOP 54999 Ribosomal protein S10
1 1 1 0 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54570 Ribosomal protein S19
1 1 1 0 SCOP 54843 Ribosomal protein L22
1 1 1 0 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 0 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
1 1 1 0 SCOP 56047 Ribosomal protein S8
1 1 1 0 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 0 SCOP 46946 S13-like H2TH domain
1 1 1 0 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 143034 L35p-like
1 1 1 0 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 0 SCOP 143800 L28p-like
1 1 1 1 SCOP 75620 Release factor
1 1 1 1 SCOP 53098 Ribonuclease H-like
1 1 1 0 SCOP 55174 Alpha-L RNA-binding motif
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 50129 GroES-like
1 1 1 0 SCOP 53850 Periplasmic binding protein-like II
1 1 1 0 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 0 SCOP 51730 FAD-linked oxidoreductase
1 1 1 0 SCOP 51161 Trimeric LpxA-like enzymes
1 1 1 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
1 1 1 1 SCOP 53720 ALDH-like
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 0 SCOP 52313 Ribosomal protein S2
1 1 1 0 SCOP 52096 ClpP/crotonase
1 1 1 0 SCOP 56655 Carbohydrate phosphatase
1 1 1 0 SCOP 52121 Lumazine synthase
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 0 SCOP 54534 FKBP-like
1 1 1 1 SCOP 82282 Homocysteine S-methyltransferase
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 1 SCOP 81442 Cytochrome c oxidase subunit I-like
1 1 1 0 SCOP 53800 Chelatase
1 1 1 0 SCOP 63965 Precorrin-8X methylmutase CbiC/CobH
1 1 1 0 SCOP 101960 Stabilizer of iron transporter SufD
1 1 1 0 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
1 1 1 0 SCOP 141734 HisI-like
1 1 1 0 SCOP 55931 Glutamine synthetase/guanido kinase
1 1 1 1 SCOP 81342 Transmembrane di-heme cytochromes
1 1 1 0 SCOP 81648 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 0 SCOP 51717 Dihydropteroate synthetase-like
1 1 1 0 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
1 1 1 0 SCOP 50022 ISP domain
1 1 1 0 SCOP 49503 Cupredoxins
1 1 1 1 SCOP 52467 DHS-like NAD/FAD-binding domain
1 1 1 0 SCOP 54736 ClpS-like
1 1 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
1 1 1 0 SCOP 103025 Folate-binding domain
1 1 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
1 1 1 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
1 1 1 0 SCOP 56507 Methionine synthase activation domain-like
1 1 1 1 SCOP 52242 Cobalamin (vitamin B12)-binding domain
1 1 1 0 SCOP 46565 Chaperone J-domain
1 1 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 1 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 81464 Cytochrome c oxidase subunit II-like, transmembrane region
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 1 SCOP 110111 Ctag/Cox11
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 54768 dsRNA-binding domain-like
1 1 1 0 SCOP 54373 FAD-linked reductases, C-terminal domain
1 1 1 0 SCOP 56053 Ribosomal protein L6
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 47644 Methionine synthase domain
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain

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