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Candidatus Sulcia muelleri SMDSEM superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; unclassified Flavobacteriales; Candidatus Sulcia; Candidatus Sulcia muelleri; Candidatus Sulcia muelleri SMDSEM

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Domain assignments


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Assignment statistics

Sequences: 242 total
218 (90 %) with assignment
343 average length
82 % amino acid coverage
Domains: 363 total
197 unique superfamilies
103 unique families
314 average length
1.8 average superfamily size
46 % formed by duplication
Domain combinations: 112 domain pairs
187 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

23 20 17 5 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
14 9 6 1 SCOP 50249 Nucleic acid-binding proteins
10 9 9 6 SCOP 54211 Ribosomal protein S5 domain 2-like
9 9 8 2 SCOP 55681 Class II aaRS and biotin synthetases
8 8 5 2 SCOP 51735 NAD(P)-binding Rossmann-fold domains
8 8 8 1 SCOP 52374 Nucleotidylyl transferase
8 6 4 4 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
6 5 4 1 SCOP 51905 FAD/NAD(P)-binding domain
5 4 4 2 SCOP 50447 Translation proteins
5 5 2 2 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
4 4 3 3 SCOP 51569 Aldolase
4 2 2 2 SCOP 53067 Actin-like ATPase domain
4 4 1 0 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
4 4 1 3 SCOP 53383 PLP-dependent transferases
4 4 3 0 SCOP 46626 Cytochrome c
4 4 4 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
4 2 2 1 SCOP 54980 EF-G C-terminal domain-like
3 2 2 2 SCOP 56059 Glutathione synthetase ATP-binding domain-like
3 3 2 1 SCOP 51366 Ribulose-phoshate binding barrel
3 3 2 1 SCOP 50104 Translation proteins SH3-like domain
3 3 3 0 SCOP 52402 Adenine nucleotide alpha hydrolases-like
3 3 3 1 SCOP 53633 Carbamate kinase-like
3 3 3 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
3 3 2 0 SCOP 54862 4Fe-4S ferredoxins
3 3 2 0 SCOP 102114 Radical SAM enzymes
3 3 3 2 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
3 2 2 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
3 2 2 0 SCOP 55021 ACT-like
3 1 1 0 SCOP 55979 DNA clamp
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
2 2 2 1 SCOP 52317 Class I glutamine amidotransferase-like
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 2 1 SCOP 53137 Translational machinery components
2 2 1 2 SCOP 55120 Pseudouridine synthase
2 2 1 0 SCOP 143800 L28p-like
2 2 1 1 SCOP 75620 Release factor
2 2 2 0 SCOP 53098 Ribonuclease H-like
2 2 1 2 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
2 2 2 1 SCOP 55174 Alpha-L RNA-binding motif
2 2 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 1 1 SCOP 48557 L-aspartase-like
2 2 2 1 SCOP 50715 Ribosomal protein L25-like
2 2 2 0 SCOP 53187 Zn-dependent exopeptidases
2 1 1 0 SCOP 54506 Diaminopimelate epimerase-like
2 2 1 0 SCOP 101960 Stabilizer of iron transporter SufD
2 2 2 0 SCOP 52954 Class II aaRS ABD-related
2 1 1 0 SCOP 46955 Putative DNA-binding domain
2 2 2 0 SCOP 52016 LeuD/IlvD-like
2 2 2 0 SCOP 51230 Single hybrid motif
2 1 1 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
2 2 2 1 SCOP 52777 CoA-dependent acyltransferases
2 2 1 1 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
2 2 2 1 SCOP 56719 Type II DNA topoisomerase
2 2 1 0 SCOP 52922 TK C-terminal domain-like
2 1 1 1 SCOP 52440 PreATP-grasp domain
2 2 2 1 SCOP 52210 Succinyl-CoA synthetase domains
2 2 2 0 SCOP 56037 PheT/TilS domain
2 2 2 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
2 1 1 0 SCOP 56053 Ribosomal protein L6
2 2 2 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
2 1 1 0 SCOP 55666 Ribonuclease PH domain 2-like
2 2 2 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
1 1 1 1 SCOP 53271 PRTase-like
1 1 1 0 SCOP 53790 Tetrapyrrole methylase
1 1 1 0 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 56420 Peptide deformylase
1 1 1 0 SCOP 56784 HAD-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 0 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 0 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 1 SCOP 46946 S13-like H2TH domain
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 0 SCOP 82649 SufE/NifU
1 1 1 0 SCOP 75217 alpha/beta knot
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 0 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
1 1 1 0 SCOP 50129 GroES-like
1 1 1 0 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
1 1 1 0 SCOP 53850 Periplasmic binding protein-like II
1 1 1 0 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 1 SCOP 51161 Trimeric LpxA-like enzymes
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 0 SCOP 53720 ALDH-like
1 1 1 0 SCOP 48452 TPR-like
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 55205 EPT/RTPC-like
1 1 1 1 SCOP 52304 Type II 3-dehydroquinate dehydratase
1 1 1 0 SCOP 48576 Terpenoid synthases
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 1 SCOP 56796 Dehydroquinate synthase-like
1 1 1 1 SCOP 51419 PLP-binding barrel
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 0 SCOP 109604 HD-domain/PDEase-like
1 1 1 0 SCOP 55315 L30e-like
1 1 1 0 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
1 1 1 0 SCOP 54534 FKBP-like
1 1 1 1 SCOP 56322 ADC synthase
1 1 1 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 1 0 SCOP 51306 LexA/Signal peptidase
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 0 SCOP 55008 HMA, heavy metal-associated domain
1 1 1 0 SCOP 55961 Bet v1-like
1 1 1 0 SCOP 81442 Cytochrome c oxidase subunit I-like
1 1 1 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
1 1 1 0 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
1 1 1 0 SCOP 52467 DHS-like NAD/FAD-binding domain
1 1 1 0 SCOP 54736 ClpS-like
1 1 1 1 SCOP 53732 Aconitase iron-sulfur domain
1 1 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 88697 PUA domain-like
1 1 1 0 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 52335 Methylglyoxal synthase-like
1 1 1 0 SCOP 48695 Multiheme cytochromes
1 1 1 1 SCOP 46565 Chaperone J-domain
1 1 1 0 SCOP 50346 PRC-barrel domain
1 1 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 1 0 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 0 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
1 1 1 0 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 0 SCOP 46589 tRNA-binding arm
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 0 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 48019 post-AAA+ oligomerization domain-like
1 1 1 0 SCOP 81573 F1F0 ATP synthase subunit B, membrane domain
1 1 1 0 SCOP 118116 DNA mismatch repair protein MutL
1 1 1 0 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 0 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 0 SCOP 81665 Calcium ATPase, transmembrane domain M
1 1 1 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 1 1 SCOP 48334 DNA repair protein MutS, domain III
1 1 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
1 1 1 1 SCOP 50621 Alanine racemase C-terminal domain-like
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
1 1 1 0 SCOP 81891 Poly A polymerase C-terminal region-like
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
1 1 1 0 SCOP 54768 dsRNA-binding domain-like
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 1 SCOP 55271 DNA repair protein MutS, domain I
1 1 1 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 0 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 1 0 SCOP 81653 Calcium ATPase, transduction domain A
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 116878 TrmE connector domain
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 101821 Aminopeptidase/glucanase lid domain
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 0 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 0 SCOP 53150 DNA repair protein MutS, domain II
1 1 1 0 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain

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