SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Pandoraea sp. RB-44

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

696 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 1272
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 302
"Winged helix" DNA-binding domain GAF domain-like 272
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2612
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2514
CheY-like C-terminal effector domain of the bipartite response regulators 212
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 215
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 1910
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 192
Thioredoxin-like GST C-terminal domain-like 191
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 183
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 177
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 167
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 162
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 166
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 151
P-loop containing nucleoside triphosphate hydrolases MOP-like 132
Homeodomain-like Homeodomain-like 136
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 134
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 131
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 123
Thiolase-like Thiolase-like 122
GroES-like NAD(P)-binding Rossmann-fold domains 122
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 111
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 114
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 114
PYP-like sensor domain (PAS domain) Nucleotide cyclase 107
Actin-like ATPase domain Actin-like ATPase domain 103
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 107
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 104
P-loop containing nucleoside triphosphate hydrolases Translation proteins 95
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 94
Nucleotide cyclase EAL domain-like 97
"Winged helix" DNA-binding domain PLP-dependent transferases 91
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 96
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 85
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 85
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 85
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 84
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 85
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 85
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 85
Calcium ATPase, transduction domain A HAD-like 74
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 71
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 74
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 73
RmlC-like cupins Homeodomain-like 72
HAD-like Calcium ATPase, transmembrane domain M 74
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 62
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 66
MetI-like MetI-like 61
Homeodomain-like SIS domain 62
Triger factor/SurA peptide-binding domain-like FKBP-like 65
Pectin lyase-like Autotransporter 63
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 65
PreATP-grasp domain Rudiment single hybrid motif 62
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
Cytochrome c Cytochrome c 65
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 51
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 53
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 52
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 54
ISP domain Bet v1-like 51
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 55
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 53
"Winged helix" DNA-binding domain Chorismate lyase-like 51
PYP-like sensor domain (PAS domain) EAL domain-like 54
CheY-like Homeodomain-like 53
HlyD-like secretion proteins HlyD-like secretion proteins 52
GAF domain-like Nucleotide cyclase 55
Alpha-L RNA-binding motif Pseudouridine synthase 53
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 55
Phospholipase D/nuclease Phospholipase D/nuclease 55
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 54
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 53
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 43
TPR-like TPR-like 44
lambda repressor-like DNA-binding domains RmlC-like cupins 41
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 42
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
CBS-domain pair FAD-binding/transporter-associated domain-like 41
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 41
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 42
Aconitase iron-sulfur domain LeuD/IlvD-like 43
CheY-like P-loop containing nucleoside triphosphate hydrolases 42
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 43
Lysozyme-like beta-lactamase/transpeptidase-like 42
Regulatory protein AraC Homeodomain-like 41
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 42
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 44
Translation proteins EF-G C-terminal domain-like 42
ACT-like ACT-like 43
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 43
Homodimeric domain of signal transducing histidine kinase CheY-like 44
PurM N-terminal domain-like PurM C-terminal domain-like 42
PYP-like sensor domain (PAS domain) GAF domain-like 44
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 42
ParB/Sulfiredoxin KorB DNA-binding domain-like 41
Class I glutamine amidotransferase-like Homeodomain-like 42
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 42
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 33
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 31
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 33
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Adhesin YadA, collagen-binding domain Pili subunits 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 33
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 31
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 31
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 33
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 32
PYP-like sensor domain (PAS domain) Homeodomain-like 33
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 31
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 32
2Fe-2S ferredoxin-like ADC-like 32
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 33
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 31
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
Aldolase post-HMGL domain-like 32
cAMP-binding domain-like "Winged helix" DNA-binding domain 32
Adhesin YadA, collagen-binding domain Adhesin YadA, collagen-binding domain 33
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 32
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 32
HD-domain/PDEase-like Nucleotidyltransferase 33
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 31
ClpP/crotonase ClpP/crotonase 31
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 32
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 31
CheY-like Histidine-containing phosphotransfer domain, HPT domain 33
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 32
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 33
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 32
PDZ domain-like PDZ domain-like 32
Aspartate/glutamate racemase Aspartate/glutamate racemase 32
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Trypsin-like serine proteases PDZ domain-like 32
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 31
Enolase N-terminal domain-like Enolase C-terminal domain-like 31
Nqo1 middle domain-like Nqo1C-terminal domain-like 32
Nucleic acid-binding proteins RuvA domain 2-like 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
TTHA1013/TTHA0281-like Ribbon-helix-helix 21
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 22
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
UROD/MetE-like UROD/MetE-like 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Galactose-binding domain-like Galactose-binding domain-like 21
Nucleotidyltransferase TGS-like 22
Galactose mutarotase-like E set domains 21
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 21
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 22
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 22
Formyltransferase FMT C-terminal domain-like 21
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 22
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, peptide-binding domain 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
4Fe-4S ferredoxins ADC-like 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 21
CheY-like Methylesterase CheB, C-terminal domain 21
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 21
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 22
Translation proteins Ribosomal protein S5 domain 2-like 21
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Histidine-containing phosphotransfer domain, HPT domain CheW-like 22
Homeodomain-like Ribonuclease H-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Folate-binding domain Aminomethyltransferase beta-barrel domain 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 21
GAF domain-like EAL domain-like 22
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
Flavoproteins Riboflavin synthase domain-like 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 22
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 22
DsbC/DsbG N-terminal domain-like Thioredoxin-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
MoeA N-terminal region -like MoeA C-terminal domain-like 21
Cupredoxins Cytochrome c 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
HMA, heavy metal-associated domain HAD-like 22
PLP-binding barrel Alanine racemase C-terminal domain-like 22
Oxidoreductase molybdopterin-binding domain E set domains 21
lambda repressor-like DNA-binding domains lambda repressor-like DNA-binding domains 22
HD-domain/PDEase-like ACT-like 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
alpha/beta-Hydrolases NTF2-like 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 21
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 22
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
ParB/Sulfiredoxin S-adenosyl-L-methionine-dependent methyltransferases 22
FAD/NAD(P)-binding domain FMN-linked oxidoreductases 22
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 21
HD-domain/PDEase-like TGS-like 22
lambda repressor-like DNA-binding domains LexA/Signal peptidase 22
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, catalytic domain 21
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Aspartate receptor, ligand-binding domain Methyl-accepting chemotaxis protein (MCP) signaling domain 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
Clc chloride channel CBS-domain pair 21
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 22
L30e-like alpha/beta knot 21
Nucleotidyltransferase ACT-like 22
Translation proteins ThrRS/AlaRS common domain 22
Sensory domain-like Nucleotide cyclase 22
Single hybrid motif CoA-dependent acyltransferases 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
YjeF N-terminal domain-like Ribokinase-like 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Translation proteins "Winged helix" DNA-binding domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
PurS-like FGAM synthase PurL, linker domain 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
FAD/NAD(P)-binding domain Folate-binding domain 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Class II aaRS and biotin synthetases GAD domain-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Fibronectin type III Fibronectin type III 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Riboflavin synthase domain-like 11
Pili subunits Pili subunits 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
alpha-helical ferredoxin Respiratory nitrate reductase 1 gamma chain 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
Chorismate mutase II Periplasmic binding protein-like II 11
Putative DNA-binding domain Translation proteins 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
HMA, heavy metal-associated domain FAD/NAD(P)-binding domain 11
TPR-like P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
CBS-domain pair Nucleotide cyclase 11
Nudix Metallo-hydrolase/oxidoreductase 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Cytochrome P450 Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
Ribonuclease H-like DNA/RNA polymerases 11
RuvA domain 2-like RuvA domain 2-like 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
Translation proteins PRC-barrel domain 11
SMAD/FHA domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins PheT/TilS domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Tex N-terminal region-like Ribonuclease H-like 11
Phospholipase D/nuclease DNase I-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Carbamate kinase-like ACT-like 11
FAD-linked reductases, C-terminal domain Aminomethyltransferase beta-barrel domain 11
"Winged helix" DNA-binding domain MOP-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Phosphoenolpyruvate/pyruvate domain Nucleotide-diphospho-sugar transferases 11
alpha-helical ferredoxin Nucleotide-binding domain 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
ADC-like Riboflavin synthase domain-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Macro domain-like Zn-dependent exopeptidases 11
Ribonuclease H-like Nucleic acid-binding proteins 11
PrpR receptor domain-like Homeodomain-like 11
MOP-like MOP-like 11
Homeodomain-like Acetamidase/Formamidase-like 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Nucleotidylyl transferase tRNA-binding arm 11
Nucleotidyltransferase PHP domain-like 11
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 11
Pentapeptide repeat-like Pentapeptide repeat-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
NAD(P)-binding Rossmann-fold domains RmlC-like cupins 11
HD-domain/PDEase-like Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
CheC-like Surface presentation of antigens (SPOA) 11
NagB/RpiA/CoA transferase-like 4Fe-4S ferredoxins 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
PurS-like PurM N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
GAF domain-like Homeodomain-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
GIY-YIG endonuclease RuvA domain 2-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Tex N-terminal region-like RuvA domain 2-like 11
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
FAD-linked oxidoreductase ALDH-like 11
TGS-like ThrRS/AlaRS common domain 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
PIN domain-like DNA/RNA polymerases 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
DHS-like NAD/FAD-binding domain MCP/YpsA-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Bacterial muramidases Lysozyme-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
CarD-like TRCF domain-like 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
HD-domain/PDEase-like GAF domain-like 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases Adenine nucleotide alpha hydrolases-like 11
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Class II aaRS and biotin synthetases Translation proteins 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
AhpD-like AhpD-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
PPK N-terminal domain-like PHP14-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
DNA methylase specificity domain DNA methylase specificity domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
CheY-like Nucleotide cyclase 11
Homeodomain-like BH3980-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
TGS-like ACT-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Bet v1-like Bet v1-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Translation proteins Translation proteins 11
Chorismate mutase II ACT-like 11
FKBP-like FKBP-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
TGS-like Class II aaRS ABD-related 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
DNA clamp DNA clamp 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
Ligand-binding domain in the NO signalling and Golgi transport Homeodomain-like 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
EAL domain-like Sensory domain-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Nucleotide cyclase P-loop containing nucleoside triphosphate hydrolases 11
Dihydropteroate synthetase-like Methionine synthase domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
PUA domain-like alpha/beta knot 11
EAL domain-like CBS-domain pair 11
Homeodomain-like TATA-box binding protein-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Trigger factor ribosome-binding domain FKBP-like 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Cytochrome P450 Riboflavin synthase domain-like 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
PilZ domain-like PilZ domain-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
CBS-domain pair Nucleotide-diphospho-sugar transferases 11
FMN-binding split barrel UbiD C-terminal domain-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
CheW-like CheY-like 11
TATA-box binding protein-like DNA-glycosylase 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
HMA, heavy metal-associated domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
Single hybrid motif Single hybrid motif 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Lysozyme-like LysM domain 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
4Fe-4S ferredoxins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
PIN domain-like Ribonuclease H-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
CheW-like CheW-like 11
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
GroES-like GroES-like 11
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Globin-like Riboflavin synthase domain-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Thioredoxin-like Thioredoxin-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
DmpA/ArgJ-like DmpA/ArgJ-like 11
Periplasmic binding protein-like II ACT-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
JAB1/MPN domain Cysteine proteinases 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Metalloproteases ("zincins"), catalytic domain Autotransporter 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Single hybrid motif FAD/NAD(P)-binding domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Hsp33 domain HSP33 redox switch-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
Carboxypeptidase regulatory domain-like (Trans)glycosidases 11
Homeodomain-like DNA-glycosylase 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
PreATP-grasp domain PreATP-grasp domain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
C-terminal effector domain of the bipartite response regulators TPR-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
PheT/TilS domain Putative DNA-binding domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
RuvA domain 2-like JAB1/MPN domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
PDZ domain-like ClpP/crotonase 11
Rudiment single hybrid motif Single hybrid motif 11
Nucleotide-diphospho-sugar transferases PilZ domain-like 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
PrpR receptor domain-like PYP-like sensor domain (PAS domain) 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
RmlC-like cupins RmlC-like cupins 11
TPR-like HCP-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
RuvA domain 2-like BRCT domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Actin-like ATPase domain Homeodomain-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
PreATP-grasp domain Single hybrid motif 11
TPR-like "Winged helix" DNA-binding domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Ribosomal protein L6 Ribosomal protein L6 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Actin-like ATPase domain SIS domain 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Cupredoxins Cupredoxins 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
PurS-like PurM C-terminal domain-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
HprK N-terminal domain-like PEP carboxykinase-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Zinc beta-ribbon DNA primase core 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
TGS-like Class II aaRS and biotin synthetases 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
PrpR receptor domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
CheY-binding domain of CheA CheW-like 11
YegP-like YegP-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Nucleotidyltransferase Nucleotidyltransferase 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Ribonuclease H-like GIY-YIG endonuclease 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Aldolase AFP III-like domain 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
GAF domain-like Homodimeric domain of signal transducing histidine kinase 11
DNA-glycosylase Nudix 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
PHP14-like Phospholipase D/nuclease 11
Carbamate kinase-like PUA domain-like 11
Cytochrome P450 2Fe-2S ferredoxin-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
DNA polymerase beta, N-terminal domain-like Nucleotidyltransferase 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
ADC-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
PRTase-like PRTase-like 11
Ankyrin repeat Ankyrin repeat 11
Acyl-CoA N-acyltransferases (Nat) FKBP-like 11
NAD(P)-binding Rossmann-fold domains ACT-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
FliG FliG 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
RNase III domain-like dsRNA-binding domain-like 11
YajQ-like YajQ-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
ACT-like Formyltransferase 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Phase 1 flagellin Phase 1 flagellin 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
GroEL-intermediate domain like GroEL apical domain-like 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
TPR-like Nucleotide cyclase 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
MesJ substrate recognition domain-like PheT/TilS domain 11
DNA polymerase beta, N-terminal domain-like PHP domain-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleic acid-binding proteins BRCT domain 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
4Fe-4S ferredoxins Riboflavin synthase domain-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
FAD-linked reductases, C-terminal domain Folate-binding domain 11
Nucleic acid-binding proteins GAD domain-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Thioredoxin-like TPR-like 11
Ligand-binding domain in the NO signalling and Golgi transport P-loop containing nucleoside triphosphate hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Ribonuclease H-like RuvA domain 2-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Ribbon-helix-helix ALDH-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
PurS-like Class I glutamine amidotransferase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
FdhE-like FdhE-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
PheT/TilS domain Anticodon-binding domain of PheRS 11

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