SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Bacillus clausii KSM-K16

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

674 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 324
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2811
Homeodomain-like Homeodomain-like 259
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 231
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 227
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 205
CheY-like C-terminal effector domain of the bipartite response regulators 191
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 163
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 161
Actin-like ATPase domain Actin-like ATPase domain 165
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 143
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 141
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 141
GroES-like NAD(P)-binding Rossmann-fold domains 131
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 121
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 122
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 114
Regulatory protein AraC Homeodomain-like 102
PTS-regulatory domain, PRD Phoshotransferase/anion transport protein 97
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 91
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 92
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 82
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 86
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 84
P-loop containing nucleoside triphosphate hydrolases MOP-like 81
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 85
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 85
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 73
"Winged helix" DNA-binding domain Chorismate lyase-like 71
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 71
PTS system IIB component-like Phoshotransferase/anion transport protein 74
MalF N-terminal region-like MetI-like 72
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 76
CheY-like Homeodomain-like 75
PTS-regulatory domain, PRD PTS-regulatory domain, PRD 74
P-loop containing nucleoside triphosphate hydrolases Translation proteins 75
Calcium ATPase, transduction domain A HAD-like 63
HAD-like Calcium ATPase, transmembrane domain M 63
PTS-regulatory domain, PRD PTS system IIB component-like 64
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 62
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 63
(Trans)glycosidases Glycosyl hydrolase domain 64
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 62
"Winged helix" DNA-binding domain GAF domain-like 61
Homeodomain-like SIS domain 61
PGBD-like PGBD-like 66
Class II aaRS and biotin synthetases Class II aaRS ABD-related 53
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 51
PreATP-grasp domain Rudiment single hybrid motif 52
Translation proteins EF-G C-terminal domain-like 53
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 52
PYP-like sensor domain (PAS domain) Homeodomain-like 53
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 52
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 54
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 51
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 52
RmlC-like cupins Homeodomain-like 52
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 52
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 54
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 53
TPR-like TPR-like 52
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 53
Lysozyme-like beta-lactamase/transpeptidase-like 54
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 52
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 53
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 43
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 44
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 41
Single hybrid motif CoA-dependent acyltransferases 41
"Winged helix" DNA-binding domain PTS-regulatory domain, PRD 44
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 42
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
Sensory domain-like Sporulation response regulatory protein Spo0B 42
SacY-like RNA-binding domain PTS-regulatory domain, PRD 42
Thiolase-like Thiolase-like 41
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 43
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 41
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 43
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 42
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 41
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 41
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 32
tRNA-binding arm Class II aaRS and biotin synthetases 31
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
ACT-like ACT-like 32
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 33
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 31
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 31
"Winged helix" DNA-binding domain Phoshotransferase/anion transport protein 33
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
HAMP domain-like PYP-like sensor domain (PAS domain) 31
P-loop containing nucleoside triphosphate hydrolases ACT-like 31
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 32
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 31
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 32
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 31
"Winged helix" DNA-binding domain PLP-dependent transferases 31
Alpha-L RNA-binding motif Pseudouridine synthase 31
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 33
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 31
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 31
Nucleic acid-binding proteins RuvA domain 2-like 33
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 33
"Winged helix" DNA-binding domain Actin-like ATPase domain 32
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 31
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 32
Enolase N-terminal domain-like Enolase C-terminal domain-like 31
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 32
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 31
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
HMA, heavy metal-associated domain HAD-like 32
PurM N-terminal domain-like PurM C-terminal domain-like 32
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 31
NAD(P)-binding Rossmann-fold domains ACT-like 33
Galactose mutarotase-like (Trans)glycosidases 22
PRC-barrel domain PRC-barrel domain 21
Serine metabolism enzymes domain ACT-like 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 21
Phospholipase D/nuclease Phospholipase D/nuclease 22
"Winged helix" DNA-binding domain PTS system IIB component-like 22
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 21
PrpR receptor domain-like Homeodomain-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 21
alpha-helical ferredoxin Nucleotide-binding domain 21
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
TGS-like Class II aaRS ABD-related 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
(Trans)glycosidases Cyclophilin-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 22
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 21
MetI-like MetI-like 21
Nucleic acid-binding proteins Ribonuclease H-like 22
Duplicated hybrid motif Lysozyme-like 22
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 22
SH3-domain SH3-domain 22
Acyl-CoA N-acyltransferases (Nat) SCP-like 22
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 21
ThrRS/AlaRS common domain Class II aaRS ABD-related 21
Putative DNA-binding domain Antibiotic binding domain of TipA-like multidrug resistance regulators 21
PGBD-like Cysteine proteinases 22
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 22
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 22
PLP-binding barrel Alanine racemase C-terminal domain-like 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
TGS-like ThrRS/AlaRS common domain 21
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 21
(Trans)glycosidases Class I glutamine amidotransferase-like 21
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 21
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 22
Nucleotidyltransferase PAP/OAS1 substrate-binding domain 21
ClpP/crotonase ClpP/crotonase 21
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
TGS-like Class II aaRS and biotin synthetases 21
PreATP-grasp domain PreATP-grasp domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Galactose mutarotase-like Glycosyl hydrolase domain 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 22
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
"Winged helix" DNA-binding domain CBS-domain pair 22
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 21
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 22
L30e-like alpha/beta knot 21
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
FKBP-like Triger factor/SurA peptide-binding domain-like 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
PYP-like sensor domain (PAS domain) Sporulation response regulatory protein Spo0B 21
PA domain Subtilisin-like 22
beta-lactamase/transpeptidase-like Penicillin-binding protein 2x (pbp-2x), c-terminal domain 22
ParB/Sulfiredoxin KorB DNA-binding domain-like 21
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 21
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Glucose permease domain IIB Duplicated hybrid motif 22
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 21
Translation proteins Ribosomal protein S5 domain 2-like 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 22
Trypsin-like serine proteases PDZ domain-like 22
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 22
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
CheC-like Surface presentation of antigens (SPOA) 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Penicillin binding protein dimerisation domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 22
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Homeodomain-like Probable bacterial effector-binding domain 21
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 21
PGBD-like Barwin-like endoglucanases 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 22
Carbamate kinase-like ACT-like 21
Sensory domain-like PYP-like sensor domain (PAS domain) 21
Pectin lyase-like Pectin lyase-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Sec-C motif Cyclin-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Rudiment single hybrid motif post-HMGL domain-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Protease propeptides/inhibitors Subtilisin-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain Carbohydrate binding domain 11
CheY-like "Winged helix" DNA-binding domain 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
PDZ domain-like PGBD-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
LysM domain L,D-transpeptidase catalytic domain-like 11
Fibronectin type III Invasin/intimin cell-adhesion fragments 11
Protein kinase-like (PK-like) Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Acyl-CoA N-acyltransferases (Nat) Carbon-nitrogen hydrolase 11
ClpP/crotonase PGBD-like 11
PUA domain-like alpha/beta knot 11
CBS-domain pair ACT-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
beta-lactamase/transpeptidase-like Fibronectin type III 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Carbohydrate binding domain Carbohydrate binding domain 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain LysM domain 11
Dimeric alpha+beta barrel Dimeric alpha+beta barrel 11
DNA primase core N-terminal domain of DnaB helicase 11
Dihydropteroate synthetase-like Methionine synthase domain 11
HprK N-terminal domain-like Thioesterase/thiol ester dehydrase-isomerase 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Zinc beta-ribbon DNA primase core 11
(Trans)glycosidases Fibronectin type III 11
Tex N-terminal region-like Ribonuclease H-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Translation proteins Translation proteins 11
Zn-dependent exopeptidases Sporulation related repeat 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Putative DNA-binding domain Cobalamin (vitamin B12)-binding domain 11
Periplasmic binding protein-like II ACT-like 11
FliG FliG 11
Lysozyme-like Fibronectin type III 11
CheW-like CheY-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
DNA repair protein MutS, domain III SMR domain-like 11
Rudiment single hybrid motif Aldolase 11
GroEL equatorial domain-like GroEL apical domain-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
RuvA domain 2-like BRCT domain 11
Aldolase post-HMGL domain-like 11
Translation proteins PRC-barrel domain 11
Penicillin-binding protein 2x (pbp-2x), c-terminal domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Chitinase insertion domain Carbohydrate binding domain 11
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Tetrapyrrole methylase HemD-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
Obg GTP-binding protein N-terminal domain Obg GTP-binding protein C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
SMAD/FHA domain P-loop containing nucleoside triphosphate hydrolases 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
GAF domain-like Homodimeric domain of signal transducing histidine kinase 11
Respiratory nitrate reductase 1 gamma chain alpha-helical ferredoxin 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
PIN domain-like DNA/RNA polymerases 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
(Trans)glycosidases Carbohydrate binding domain 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Nucleic acid-binding proteins GAD domain-like 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
"Winged helix" DNA-binding domain PRTase-like 11
PUA domain-like Nucleotidylyl transferase 11
HAD-like Nudix 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
ACT-like Formyltransferase 11
FucI/AraA N-terminal and middle domains FucI/AraA C-terminal domain-like 11
Nucleotidyltransferase TGS-like 11
Cystatin/monellin Cystatin/monellin 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Actin-like ATPase domain Xylose isomerase-like 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Metallo-dependent phosphatases Carbohydrate binding domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
Globin-like Riboflavin synthase domain-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Aldolase Single hybrid motif 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Ribonuclease H-like RuvA domain 2-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Ribosomal protein L6 Ribosomal protein L6 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Lamin A/C globular tail domain PLC-like phosphodiesterases 11
PreATP-grasp domain Methylglyoxal synthase-like 11
NTF2-like Penicillin binding protein dimerisation domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
PDZ domain-like ClpP/crotonase 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Zinc beta-ribbon N-terminal domain of DnaB helicase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
MgtE N-terminal domain-like CBS-domain pair 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
(Trans)glycosidases Putative glucosidase YicI, C-terminal domain 11
ARM repeat Duplicated hybrid motif 11
ARM repeat Lysozyme-like 11
CBS-domain pair Poly A polymerase C-terminal region-like 11
Fibronectin type III Carbohydrate binding domain 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
FAD/NAD(P)-binding domain ISP domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
L9 N-domain-like Ribonuclease H-like 11
LysM domain (Trans)glycosidases 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
Nucleotide-diphospho-sugar transferases TPR-like 11
"Winged helix" DNA-binding domain Putative transcriptional regulator TM1602, C-terminal domain 11
NTF2-like beta-lactamase/transpeptidase-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like ACT-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Tropomyosin Duplicated hybrid motif 11
NEAT domain-like NEAT domain-like 11
DNA-glycosylase Nudix 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
CBS-domain pair Thioesterase/thiol ester dehydrase-isomerase 11
Nucleotide cyclase DHH phosphoesterases 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
2Fe-2S ferredoxin-like ADC-like 11
Fibronectin type III Galactose-binding domain-like 11
Glycosyl hydrolase domain Putative glucosidase YicI, C-terminal domain 11
Hypothetical protein SAV1430 ARM repeat 11
PDZ domain-like Ribosomal protein S5 domain 2-like 11
alpha-helical ferredoxin ARM repeat 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
4Fe-4S ferredoxins ADC-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
GAF domain-like PYP-like sensor domain (PAS domain) 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
PTS system IIB component-like PTS system IIB component-like 11
AraD/HMP-PK domain-like NAD(P)-binding Rossmann-fold domains 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
Acyl-CoA N-acyltransferases (Nat) PLP-dependent transferases 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
"Helical backbone" metal receptor "Helical backbone" metal receptor 11
Calcium-dependent phosphotriesterase Bacterial adhesins 11
PreATP-grasp domain Aldolase 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
HD-domain/PDEase-like TGS-like 11
LysM domain LysM domain 11
P-loop containing nucleoside triphosphate hydrolases PTS-regulatory domain, PRD 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
DNA polymerase beta, N-terminal domain-like PHP domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Homeodomain-like "Helical backbone" metal receptor 11
P-loop containing nucleoside triphosphate hydrolases Obg GTP-binding protein C-terminal domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 11
TPR-like Hypothetical protein MPN330 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 11
PreATP-grasp domain post-HMGL domain-like 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
(Trans)glycosidases Chitinase insertion domain 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 11
TGS-like ACT-like 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 11
PTS system fructose IIA component-like PTS-regulatory domain, PRD 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
CBS-domain pair MgtE membrane domain-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Nucleic acid-binding proteins HD-domain/PDEase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Rudiment single hybrid motif Single hybrid motif 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
LysM domain Barwin-like endoglucanases 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
DHH phosphoesterases Nucleotidyltransferase 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Homocysteine S-methyltransferase FAD-linked oxidoreductase 11
TATA-box binding protein-like DNA-glycosylase 11
DHH phosphoesterases Poly A polymerase C-terminal region-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
"Winged helix" DNA-binding domain NAD(P)-binding Rossmann-fold domains 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
lambda repressor-like DNA-binding domains RmlC-like cupins 11
Cupredoxins Cupredoxins 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
Hsp33 domain HSP33 redox switch-like 11
ClpP/crotonase NfeD domain-like 11
Putative DNA-binding domain Putative DNA-binding domain 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
DNA clamp DNA clamp 11
PheT/TilS domain Putative DNA-binding domain 11
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 11
PHP domain-like Nucleic acid-binding proteins 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
Metallo-dependent phosphatases LysM domain 11
PrpR receptor domain-like P-loop containing nucleoside triphosphate hydrolases 11
GIY-YIG endonuclease RuvA domain 2-like 11
YrdC/RibB RibA-like 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
Translation proteins ThrRS/AlaRS common domain 11
YjeF N-terminal domain-like Ribokinase-like 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Lamin A/C globular tail domain Lamin A/C globular tail domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
EAL domain-like Sensory domain-like 11
E set domains Carbohydrate binding domain 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
UbiD C-terminal domain-like UbiD C-terminal domain-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Cupredoxins Cytochrome c 11
Methionine synthase domain Methionine synthase activation domain-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
DNA polymerase beta, N-terminal domain-like Nucleotidyltransferase 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
HD-domain/PDEase-like ACT-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
MetI-like Periplasmic binding protein-like II 11
Tetrapyrrole methylase all-alpha NTP pyrophosphatases 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
CBS-domain pair Nucleotidyltransferase 11
Fibronectin type III Tropomyosin 11
PK C-terminal domain-like Phosphohistidine domain 11
UROD/MetE-like UROD/MetE-like 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Cytochrome c 11
RuvA domain 2-like RuvA domain 2-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
lambda repressor-like DNA-binding domains TPR-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
MFS general substrate transporter PYP-like sensor domain (PAS domain) 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Carbamate kinase-like PUA domain-like 11
Bacterial adhesins Bacterial adhesins 11
Trigger factor ribosome-binding domain FKBP-like 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
CarD-like TRCF domain-like 11
Tex N-terminal region-like RuvA domain 2-like 11
Chitinase insertion domain Fibronectin type III 11
vWA-like vWA-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Formyltransferase FMT C-terminal domain-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Galactose mutarotase-like Putative glucosidase YicI, C-terminal domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Homeodomain-like FAD/NAD(P)-binding domain 11
DHH phosphoesterases CBS-domain pair 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
PIN domain-like Ribonuclease H-like 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
Nucleic acid-binding proteins BRCT domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
KaiA/RbsU domain PP2C-like 11
post-HMGL domain-like Single hybrid motif 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Fibronectin type III Integrin alpha N-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
CheY-binding domain of CheA CheW-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
lambda repressor-like DNA-binding domains AbrB/MazE/MraZ-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
DeoB insert domain-like Alkaline phosphatase-like 11
RNase III domain-like dsRNA-binding domain-like 11
Ribonuclease H-like DNA/RNA polymerases 11
Macro domain-like Zn-dependent exopeptidases 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
PLC-like phosphodiesterases PLC-like phosphodiesterases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Galactose-binding domain-like (Trans)glycosidases 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
HprK N-terminal domain-like CBS-domain pair 11
HisI-like all-alpha NTP pyrophosphatases 11
Homodimeric domain of signal transducing histidine kinase CheY-like 11
Class II aaRS and biotin synthetases Translation proteins 11
AbrB/MazE/MraZ-like GAF domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
PreATP-grasp domain Single hybrid motif 11
Nucleotidyltransferase ACT-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
Rhomboid-like TPR-like 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
PK beta-barrel domain-like Phosphohistidine domain 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
"Winged helix" DNA-binding domain HprK N-terminal domain-like 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Cna protein B-type domain Cna protein B-type domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
GroEL-intermediate domain like GroEL apical domain-like 11
Class II aaRS and biotin synthetases SufE/NifU 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
"Winged helix" DNA-binding domain Thioesterase/thiol ester dehydrase-isomerase 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
CheY-like P-loop containing nucleoside triphosphate hydrolases 11
YojJ-like RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Nucleotidyltransferase PHP domain-like 11
Zn-dependent exopeptidases PGBD-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease H-like TPR-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 11
Tropomyosin Galactose-binding domain-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Nucleotidylyl transferase tRNA-binding arm 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Flavoproteins Riboflavin synthase domain-like 11
SMAD/FHA domain C-terminal effector domain of the bipartite response regulators 11
P-loop containing nucleoside triphosphate hydrolases PTS system fructose IIA component-like 11
Tropomyosin RuvA domain 2-like 11
"Winged helix" DNA-binding domain HRDC-like 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]