SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Wolinella succinogenes DSM 1740

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

492 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3313
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 149
Homeodomain-like Ribonuclease H-like 131
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 119
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 112
Homodimeric domain of signal transducing histidine kinase CheY-like 119
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 108
CheY-like C-terminal effector domain of the bipartite response regulators 101
Nucleotide cyclase EAL domain-like 106
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 97
CheY-like PYP-like sensor domain (PAS domain) 97
Actin-like ATPase domain Actin-like ATPase domain 84
PYP-like sensor domain (PAS domain) Nucleotide cyclase 87
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 85
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 73
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 77
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 62
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 62
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 54
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 51
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 54
PurM N-terminal domain-like PurM C-terminal domain-like 52
PYP-like sensor domain (PAS domain) EAL domain-like 54
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 53
CheW-like CheY-like 54
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 54
PreATP-grasp domain Rudiment single hybrid motif 52
P-loop containing nucleoside triphosphate hydrolases Translation proteins 55
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 54
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 54
ACT-like ACT-like 52
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 54
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 52
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 42
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 42
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 41
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 42
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 43
PLP-binding barrel Alanine racemase C-terminal domain-like 42
Homeodomain-like Homeodomain-like 43
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 44
Calcium ATPase, transduction domain A HAD-like 44
CheY-like Nucleotide cyclase 43
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 43
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 41
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 44
Cytochrome c Cytochrome c 42
Histidine-containing phosphotransfer domain, HPT domain CheY-like 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 31
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 33
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 33
Calcium ATPase, transmembrane domain M HAD-like 33
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 33
HMA, heavy metal-associated domain HAD-like 33
cAMP-binding domain-like "Winged helix" DNA-binding domain 31
TPR-like TPR-like 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
alpha-helical ferredoxin Nucleotide-binding domain 22
2Fe-2S ferredoxin-like alpha-helical ferredoxin 22
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldehyde ferredoxin oxidoreductase, C-terminal domains 21
Nucleotidyltransferase ACT-like 22
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 21
CBS-domain pair Nucleotide cyclase 22
Nucleic acid-binding proteins RuvA domain 2-like 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
CheY-like EAL domain-like 21
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Regulatory protein AraC Homeodomain-like 21
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 22
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
CheC-like Surface presentation of antigens (SPOA) 22
Alpha-L RNA-binding motif Pseudouridine synthase 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 21
Periplasmic binding protein-like II CheY-like 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 21
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 22
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Periplasmic binding protein-like II Periplasmic binding protein-like II 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
CheY-like CheY-like 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Translation proteins EF-G C-terminal domain-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
FKBP-like Triger factor/SurA peptide-binding domain-like 22
MoeA N-terminal region -like MoeA C-terminal domain-like 21
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
S-adenosyl-L-methionine-dependent methyltransferases DNA methylase specificity domain 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 22
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
SirA-like DsrEFH-like 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
CheY-like Homeodomain-like 11
PYP-like sensor domain (PAS domain) GAF domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
DNA clamp DNA clamp 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
PPK N-terminal domain-like PHP14-like 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
CBS-domain pair PYP-like sensor domain (PAS domain) 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Rubredoxin-like Ferritin-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
cAMP-binding domain-like CBS-domain pair 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
PDZ domain-like ClpP/crotonase 11
Nucleic acid-binding proteins BRCT domain 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
"Winged helix" DNA-binding domain MOP-like 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Translation proteins ThrRS/AlaRS common domain 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
FMN-binding split barrel UbiD C-terminal domain-like 11
post-HMGL domain-like Single hybrid motif 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Aldolase Single hybrid motif 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Apolipoprotein A-I ARM repeat 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
RNase III domain-like dsRNA-binding domain-like 11
CBS-domain pair CBS-domain pair 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Nucleotidylyl transferase tRNA-binding arm 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
TGS-like ACT-like 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Radical SAM enzymes RuvA domain 2-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
vWA-like TPR-like 11
YajQ-like YajQ-like 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
UbiD C-terminal domain-like UbiD C-terminal domain-like 11
Cupredoxins Cytochrome c 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
HisI-like all-alpha NTP pyrophosphatases 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
GroEL-intermediate domain like GroEL apical domain-like 11
OMPA-like TSP type-3 repeat 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Nitrite/Sulfite reductase N-terminal domain-like SirA-like 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
Glycerol-3-phosphate (1)-acyltransferase Acyl-CoA N-acyltransferases (Nat) 11
Class II aaRS and biotin synthetases GAD domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
PUA domain-like Nucleotidylyl transferase 11
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Pectin lyase-like Autotransporter 11
Lysozyme-like LysM domain 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
alpha/beta-Hydrolases Acylphosphatase/BLUF domain-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Chorismate mutase II ACT-like 11
LysM domain LysM domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Zinc beta-ribbon DNA primase core 11
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Nucleic acid-binding proteins GAD domain-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
UROD/MetE-like UROD/MetE-like 11
P-loop containing nucleoside triphosphate hydrolases MOP-like 11
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 11
beta and beta-prime subunits of DNA dependent RNA-polymerase beta and beta-prime subunits of DNA dependent RNA-polymerase 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like SirA-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Sensory domain-like Nucleotide cyclase 11
HD-domain/PDEase-like ACT-like 11
PDZ domain-like PDZ domain-like 11
CarD-like TRCF domain-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Nitrogenase accessory factor-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
alpha-helical ferredoxin alpha-helical ferredoxin 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
GAF domain-like HD-domain/PDEase-like 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
L,D-transpeptidase catalytic domain-like NTF2-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
Nucleotidylyl transferase Nucleotidyltransferase 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Periplasmic binding protein-like II ACT-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Galactose-binding domain-like Restriction endonuclease-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Rudiment single hybrid motif Cyclophilin-like 11
Nucleotidyltransferase TGS-like 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
DNA-glycosylase Nudix 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Metallo-hydrolase/oxidoreductase Flavoproteins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
P-loop containing nucleoside triphosphate hydrolases Galactose-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 11
Ribonuclease H-like DNA/RNA polymerases 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Rhodanese/Cell cycle control phosphatase P-loop containing nucleoside triphosphate hydrolases 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Homeodomain-like Probable bacterial effector-binding domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Cyclophilin-like Cyclophilin-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Nqo1C-terminal domain-like alpha-helical ferredoxin 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
TSP type-3 repeat OmpA-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
LeuD/IlvD-like Aconitase iron-sulfur domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
L30e-like alpha/beta knot 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
NosL/MerB-like NosL/MerB-like 11
Phase 1 flagellin Phase 1 flagellin 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Cyclophilin-like Single hybrid motif 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
CheY-like "Winged helix" DNA-binding domain 11
GAF domain-like CheY-like 11
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Macro domain-like Zn-dependent exopeptidases 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
EAL domain-like CBS-domain pair 11
Poly A polymerase C-terminal region-like ACT-like 11
Trypsin-like serine proteases PDZ domain-like 11
Glutathione synthetase ATP-binding domain-like NAD(P)-binding Rossmann-fold domains 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Metallo-hydrolase/oxidoreductase GAF domain-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
YrdC/RibB RibA-like 11
DNA methylase specificity domain DNA methylase specificity domain 11
ACT-like Formyltransferase 11
PreATP-grasp domain Single hybrid motif 11
RuvA domain 2-like BRCT domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
SpoIIaa-like DmpA/ArgJ-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleotide-binding domain Nucleotide-binding domain 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 11
MOP-like MOP-like 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
CheY-like P-loop containing nucleoside triphosphate hydrolases 11
SufE/NifU Fe-S cluster assembly (FSCA) domain-like 11
EAL domain-like Sensory domain-like 11
Zinc beta-ribbon Zinc beta-ribbon 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
TerB-like Chaperone J-domain 11
Aldolase post-HMGL domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Nqo5-like HydB/Nqo4-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
PreATP-grasp domain Cyclophilin-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
Serine metabolism enzymes domain ACT-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Phospholipase D/nuclease Phospholipase D/nuclease 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Fibronectin type III Fibronectin type III 11
PreATP-grasp domain PreATP-grasp domain 11
Ribosomal protein L6 Ribosomal protein L6 11
YjeF N-terminal domain-like Ribokinase-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Rudiment single hybrid motif Single hybrid motif 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
Voltage-gated potassium channels TrkA C-terminal domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Nqo1C-terminal domain-like Nucleotide-binding domain 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 11
OMPA-like OmpA-like 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Nitrous oxide reductase, N-terminal domain Cytochrome c 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Cyclophilin-like PH0987 N-terminal domain-like 11
TK C-terminal domain-like 4Fe-4S ferredoxins 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
HCP-like HCP-like 11
Rubredoxin-like Rubredoxin-like 11
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Aldolase AFP III-like domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
PH0987 N-terminal domain-like Single hybrid motif 11
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 11
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
HD-domain/PDEase-like Nucleotidyltransferase 11
PHP14-like Phospholipase D/nuclease 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
GAF domain-like Homodimeric domain of signal transducing histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
FliG FliG 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Carbamate kinase-like ACT-like 11
GAF domain-like Homeodomain-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
CheY-like HD-domain/PDEase-like 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Translation proteins "Winged helix" DNA-binding domain 11
Barwin-like endoglucanases Sporulation related repeat 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
PHP domain-like AF1531-like 11
Trigger factor ribosome-binding domain FKBP-like 11
Calcium ATPase, transmembrane domain M Metal cation-transporting ATPase, ATP-binding domain N 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Metallo-hydrolase/oxidoreductase HD-domain/PDEase-like 11
EspE N-terminal domain-like EspE N-terminal domain-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
PIN domain-like Ribonuclease H-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
PIN domain-like DNA/RNA polymerases 11
Ribokinase-like Nucleotidylyl transferase 11
Lysozyme-like beta-lactamase/transpeptidase-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
Translation proteins Translation proteins 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Formyltransferase FMT C-terminal domain-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Thiolase-like Thiolase-like 11
HD-domain/PDEase-like TGS-like 11
HMA, heavy metal-associated domain Metal cation-transporting ATPase, ATP-binding domain N 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11

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