SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Pseudomonas sp. UW4

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

813 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 1101
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 5427
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3415
Homeodomain-like Homeodomain-like 347
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 323
CheY-like C-terminal effector domain of the bipartite response regulators 251
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 2220
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 214
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 211
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 205
P-loop containing nucleoside triphosphate hydrolases MOP-like 201
Homodimeric domain of signal transducing histidine kinase CheY-like 1816
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 187
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 184
Nucleotide cyclase EAL domain-like 1811
Thioredoxin-like GST C-terminal domain-like 182
Thiolase-like Thiolase-like 181
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 178
GroES-like NAD(P)-binding Rossmann-fold domains 172
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 162
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 164
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1611
PYP-like sensor domain (PAS domain) Nucleotide cyclase 1512
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1510
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 155
Class I glutamine amidotransferase-like Homeodomain-like 142
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 145
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1311
Actin-like ATPase domain Actin-like ATPase domain 133
"Winged helix" DNA-binding domain PLP-dependent transferases 121
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 125
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 113
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 113
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 113
CheY-like P-loop containing nucleoside triphosphate hydrolases 113
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 113
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 113
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 113
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 106
CheY-like Homeodomain-like 102
PYP-like sensor domain (PAS domain) EAL domain-like 108
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 102
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 101
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 104
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 94
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 94
Phospholipase D/nuclease Phospholipase D/nuclease 85
C-terminal effector domain of the bipartite response regulators P-loop containing nucleoside triphosphate hydrolases 85
PYP-like sensor domain (PAS domain) CheY-like 86
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 81
C-terminal effector domain of the bipartite response regulators TPR-like 85
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 81
Regulatory protein AraC Homeodomain-like 83
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 72
Homeodomain-like Ribonuclease H-like 71
RmlC-like cupins Homeodomain-like 72
PreATP-grasp domain Rudiment single hybrid motif 73
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 77
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 74
ACT-like ACT-like 74
PYP-like sensor domain (PAS domain) Homeodomain-like 75
lambda repressor-like DNA-binding domains RmlC-like cupins 71
P-loop containing nucleoside triphosphate hydrolases Translation proteins 77
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 73
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 77
Calcium ATPase, transduction domain A HAD-like 65
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 64
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 65
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
"Winged helix" DNA-binding domain GAF domain-like 61
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 62
Enolase N-terminal domain-like Enolase C-terminal domain-like 61
CheY-like CheY-like 66
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 63
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 62
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 63
CheY-like Histidine-containing phosphotransfer domain, HPT domain 66
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 66
MetI-like MetI-like 62
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 63
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 63
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 63
Calcium ATPase, transmembrane domain M HAD-like 65
P-loop containing nucleoside triphosphate hydrolases TPR-like 53
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 55
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 52
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 55
Alpha-L RNA-binding motif Pseudouridine synthase 52
GAF domain-like PYP-like sensor domain (PAS domain) 55
"Winged helix" DNA-binding domain Chorismate lyase-like 51
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 52
CheW-like CheY-like 54
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 51
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 51
Cytochrome c Cytochrome c 54
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 54
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 54
cAMP-binding domain-like "Winged helix" DNA-binding domain 51
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 53
beta-Roll beta-Roll 55
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 44
GAF domain-like Homodimeric domain of signal transducing histidine kinase 44
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 41
Phage tail proteins Phage tail proteins 42
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 44
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 42
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 44
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 44
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 43
CoA-dependent acyltransferases CoA-dependent acyltransferases 44
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 41
GAF domain-like Nucleotide cyclase 44
PLP-binding barrel Alanine racemase C-terminal domain-like 42
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
PurM N-terminal domain-like PurM C-terminal domain-like 42
CBS-domain pair FAD-binding/transporter-associated domain-like 41
Cupredoxins Cupredoxins 43
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 42
CoA-dependent acyltransferases ACP-like 44
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 41
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 42
"Winged helix" DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 44
Single hybrid motif CoA-dependent acyltransferases 42
Phage tail proteins gp5 N-terminal domain-like 42
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 42
HlyD-like secretion proteins HlyD-like secretion proteins 41
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 42
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 44
Nucleic acid-binding proteins RuvA domain 2-like 44
Folate-binding domain Aminomethyltransferase beta-barrel domain 42
Class II aaRS and biotin synthetases Class II aaRS ABD-related 44
Acetyl-CoA synthetase-like ACP-like 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Glutathione synthetase ATP-binding domain-like Single hybrid motif 32
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 31
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
HD-domain/PDEase-like ACT-like 32
Translation proteins EF-G C-terminal domain-like 33
Rudiment single hybrid motif Single hybrid motif 32
Lysozyme-like beta-lactamase/transpeptidase-like 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
GAF domain-like EAL domain-like 33
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 33
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 32
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 32
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 32
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
FKBP-like Triger factor/SurA peptide-binding domain-like 33
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 33
Nucleotidyltransferase HD-domain/PDEase-like 32
ISP domain Bet v1-like 32
Aldolase post-HMGL domain-like 33
(Trans)glycosidases Glycosyl hydrolase domain 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 33
ACT-like P-loop containing nucleoside triphosphate hydrolases 32
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 33
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 32
Aconitase iron-sulfur domain LeuD/IlvD-like 33
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Nucleotidyltransferase ACT-like 32
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 32
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 33
E set domains (Trans)glycosidases 33
YrdC/RibB RibA-like 31
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 33
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 31
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 32
TSP type-3 repeat OmpA-like 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
HMA, heavy metal-associated domain HAD-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
Histidine-containing phosphotransfer domain, HPT domain CheW-like 33
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 32
PreATP-grasp domain Single hybrid motif 32
Homeodomain-like SIS domain 31
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 32
CheY-like Nucleotide cyclase 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
ACP-like ACP-like 33
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 31
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 33
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 33
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 33
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 21
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 21
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
ClpP/crotonase ClpP/crotonase 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 21
alpha-helical ferredoxin Nucleotide-binding domain 21
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 21
TGS-like ACT-like 21
4Fe-4S ferredoxins ADC-like 21
Periplasmic binding protein-like II CheY-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
CheY-like Methylesterase CheB, C-terminal domain 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
E set domains Glycosyl hydrolase domain 22
HAMP domain-like CheY-like 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 22
DsbC/DsbG N-terminal domain-like Thioredoxin-like 21
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 21
ACT-like Formyltransferase 21
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Periplasmic binding protein-like II Lysozyme-like 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 21
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
Cupredoxins Cytochrome c 22
Ribonuclease H-like DNA/RNA polymerases 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
MoeA N-terminal region -like MoeA C-terminal domain-like 21
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 21
Nucleotidyltransferase TGS-like 21
Heme-dependent peroxidases beta-Roll 22
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 22
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 21
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 22
Metallo-hydrolase/oxidoreductase SCP-like 21
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
HPr-like Phosphohistidine domain 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
PK beta-barrel domain-like PK C-terminal domain-like 21
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 21
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 21
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 21
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 22
Cadherin-like Cadherin-like 22
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
TGS-like Class II aaRS ABD-related 22
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
HPr-like Phosphoenolpyruvate/pyruvate domain 22
PH0987 N-terminal domain-like Cyclophilin-like 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 22
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
Nucleotide-diphospho-sugar transferases RmlC-like cupins 21
HAMP domain-like PYP-like sensor domain (PAS domain) 21
Translation proteins ThrRS/AlaRS common domain 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 22
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 21
Heme-dependent peroxidases Heme-dependent peroxidases 22
GroES-like GroES-like 21
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
GAF domain-like Homeodomain-like 22
lambda repressor-like DNA-binding domains LexA/Signal peptidase 21
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
PDZ domain-like ClpP/crotonase 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 22
vWA-like TPR-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 21
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 22
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
Galactose mutarotase-like E set domains 22
beta-Roll Cadherin-like 22
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
PLP-dependent transferases PLP-dependent transferases 21
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 21
RuvA domain 2-like RuvA domain 2-like 22
"Winged helix" DNA-binding domain LexA/Signal peptidase 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
TGS-like ThrRS/AlaRS common domain 22
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 21
2Fe-2S ferredoxin-like ADC-like 21
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
ThrRS/AlaRS common domain Class II aaRS ABD-related 22
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 21
HD-domain/PDEase-like TGS-like 21
Periplasmic binding protein-like II Periplasmic binding protein-like II 22
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 22
PUA domain-like Ribosomal protein S5 domain 2-like 22
Sm-like ribonucleoproteins cAMP-binding domain-like 22
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 21
GAF domain-like CheY-like 22
PDZ domain-like PDZ domain-like 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 22
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 21
Trypsin-like serine proteases PDZ domain-like 22
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 21
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
RuvA domain 2-like JAB1/MPN domain 11
Cyclophilin-like Single hybrid motif 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
"Winged helix" DNA-binding domain SCP-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Zinc beta-ribbon Zinc beta-ribbon 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Periplasmic binding protein-like I Periplasmic binding protein-like I 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Methyl-accepting chemotaxis protein (MCP) signaling domain CheY-like 11
Molybdenum cofactor-binding domain Bet v1-like 11
E set domains E set domains 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases FAD/NAD(P)-binding domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
TrkA C-terminal domain-like FAD-binding/transporter-associated domain-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Periplasmic binding protein-like II NosL/MerB-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
Pectin lyase-like Autotransporter 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Periplasmic binding protein-like II EAL domain-like 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
MetI-like P-loop containing nucleoside triphosphate hydrolases 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
Cytochrome c Periplasmic binding protein-like I 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain Nucleotidyltransferase 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
SGNH hydrolase Autotransporter 11
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Single hybrid motif Single hybrid motif 11
PurS-like PurM N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
NTF2-like Homeodomain-like 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
ImpE-like C-terminal effector domain of the bipartite response regulators 11
ISP domain FAD/NAD(P)-binding domain 11
CbiG N-terminal domain-like Tetrapyrrole methylase 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Bacterial muramidases Lysozyme-like 11
LysM domain LysM domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
Mechanosensitive channel protein MscS (YggB), C-terminal domain cAMP-binding domain-like 11
ImpE-like TPR-like 11
(Phosphotyrosine protein) phosphatases II Autotransporter 11
HCP-like HCP-like 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
NTF2-like Sec-C motif 11
Thioredoxin-like TPR-like 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 11
Duplicated hybrid motif HPr-like 11
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Caspase-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
FMN-binding split barrel Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Nucleic acid-binding proteins GAD domain-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
PP2C-like Protein kinase-like (PK-like) 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Homodimeric domain of signal transducing histidine kinase 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Periplasmic binding protein-like II ACT-like 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Pectin lyase-like SGNH hydrolase 11
Thioredoxin-like Cytochrome c 11
GIY-YIG endonuclease RuvA domain 2-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Nudix Nudix 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
Putative DNA-binding domain Translation proteins 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Phase 1 flagellin Phase 1 flagellin 11
ACT-like Homeodomain-like 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
NAD(P)-binding Rossmann-fold domains EPT/RTPC-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
MgtE N-terminal domain-like CBS-domain pair 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Galactose-binding domain-like Galactose-binding domain-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
Acetyl-CoA synthetase-like ClpP/crotonase 11
Macro domain-like Zn-dependent exopeptidases 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Galactose mutarotase-like Six-hairpin glycosidases 11
Tex N-terminal region-like Ribonuclease H-like 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
CheY-like EAL domain-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Carbamate kinase-like ACT-like 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
MFS general substrate transporter MFS general substrate transporter 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Globin-like Riboflavin synthase domain-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
PurS-like PurM C-terminal domain-like 11
CBS-domain pair Nucleotide cyclase 11
Cloacin translocation domain His-Me finger endonucleases 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
MFS general substrate transporter S-adenosyl-L-methionine-dependent methyltransferases 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Ribonuclease H-like RuvA domain 2-like 11
RmlC-like cupins AhpD-like 11
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 11
Sensory domain-like Nucleotide cyclase 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
ACP-like alpha/beta-Hydrolases 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
GroEL-intermediate domain like GroEL apical domain-like 11
P-loop containing nucleoside triphosphate hydrolases Adenine nucleotide alpha hydrolases-like 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Cadherin-like SGNH hydrolase 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
vWA-like beta-Roll 11
GAF domain-like HD-domain/PDEase-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Chorismate mutase II ACT-like 11
Rudiment single hybrid motif Cyclophilin-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Duplicated hybrid motif Phosphohistidine domain 11
Translation proteins PRC-barrel domain 11
PheT/TilS domain Putative DNA-binding domain 11
Periplasmic binding protein-like II OmpA-like 11
Multiheme cytochromes TPR-like 11
Duplicated hybrid motif Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
MesJ substrate recognition domain-like PheT/TilS domain 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
UDP-Glycosyltransferase/glycogen phosphorylase Acyl-CoA N-acyltransferases (Nat) 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Formyltransferase FMT C-terminal domain-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Nucleic acid-binding proteins BRCT domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Class II aaRS and biotin synthetases Translation proteins 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
TGS-like Class II aaRS and biotin synthetases 11
Phoshotransferase/anion transport protein Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
FAD-linked oxidoreductase ALDH-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
YegP-like YegP-like 11
PurS-like Class I glutamine amidotransferase-like 11
Aldolase Single hybrid motif 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
EreA/ChaN-like EreA/ChaN-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
ISP domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Protein kinase-like (PK-like) Protein kinase-like (PK-like) 11
P-loop containing nucleoside triphosphate hydrolases Lysozyme-like 11
PUA domain-like alpha/beta knot 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
MOP-like MOP-like 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ribonuclease H-like HRDC-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Flavoproteins Riboflavin synthase domain-like 11
CheY-like TPR-like 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 11
Nqo5-like HydB/Nqo4-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like II Nucleotide cyclase 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
CheC-like Surface presentation of antigens (SPOA) 11
UROD/MetE-like UROD/MetE-like 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
Phoshotransferase/anion transport protein HPr-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
FMN-binding split barrel UbiD C-terminal domain-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
PIN domain-like DNA/RNA polymerases 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
CheY-like PP2C-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
YjeF N-terminal domain-like Ribokinase-like 11
Thioredoxin-like Thioredoxin-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Metalloproteases ("zincins"), catalytic domain Fibronectin type III 11
FMN-binding split barrel 2Fe-2S ferredoxin-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
FliG FliG 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
PapD-like Periplasmic chaperone C-domain 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Hsp33 domain HSP33 redox switch-like 11
EAL domain-like CBS-domain pair 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Sensory domain-like Sensory domain-like 11
CheY-like Ornithine decarboxylase C-terminal domain 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
PreATP-grasp domain PreATP-grasp domain 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins Ribosomal protein S5 domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
CarD-like TRCF domain-like 11
Class II aaRS and biotin synthetases C-terminal domain of ProRS 11
Carbamate kinase-like PUA domain-like 11
OMPA-like TSP type-3 repeat 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
PurS-like FGAM synthase PurL, linker domain 11
Lysozyme-like LysM domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
Methyl-accepting chemotaxis protein (MCP) signaling domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Cyclophilin-like Cyclophilin-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Acyl-CoA N-acyltransferases (Nat) Glutathione synthetase ATP-binding domain-like 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
ACT-like PYP-like sensor domain (PAS domain) 11
post-HMGL domain-like Single hybrid motif 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
CheY-like PLP-dependent transferases 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
GAF domain-like GAF domain-like 11
beta-Roll SGNH hydrolase 11
Zinc beta-ribbon DNA primase core 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 11
Methionine synthase domain Methionine synthase activation domain-like 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
(Trans)glycosidases Nucleotide-diphospho-sugar transferases 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
L domain-like Protein kinase-like (PK-like) 11
FKBP-like FKBP-like 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
L30e-like alpha/beta knot 11
ACT-like HAD-like 11
Trigger factor ribosome-binding domain FKBP-like 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Phoshotransferase/anion transport protein Phosphoenolpyruvate/pyruvate domain 11
Nudix Thiamin phosphate synthase 11
Class II aaRS ABD-related C-terminal domain of ProRS 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
DNA clamp DNA clamp 11
PTS system IIB component-like PTS system IIB component-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Phoshotransferase/anion transport protein Phosphohistidine domain 11
Galactose mutarotase-like Galactose mutarotase-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
OMPA-like OmpA-like 11
Ribokinase-like Nucleotidylyl transferase 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Acetyl-CoA synthetase-like Thioesterase/thiol ester dehydrase-isomerase 11
TATA-box binding protein-like DNA-glycosylase 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Pectin lyase-like beta-Roll 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Barwin-like endoglucanases Sporulation related repeat 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
Nucleic acid-binding proteins PheT/TilS domain 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Tricorn protease domain 2 MetI-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
YbaK/ProRS associated domain HD-domain/PDEase-like 11
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
PPK N-terminal domain-like PHP14-like 11
Translation proteins Translation proteins 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
Lysozyme-like PGBD-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 11
Lipovitellin-phosvitin complex, superhelical domain TPR-like 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidyltransferase Nucleotidyltransferase 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Nucleotidylyl transferase tRNA-binding arm 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
CheY-like HD-domain/PDEase-like 11
CO dehydrogenase molybdoprotein N-domain-like Bet v1-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes CBS-domain pair 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
His-Me finger endonucleases Ada DNA repair protein, N-terminal domain (N-Ada 10) 11
RuvA domain 2-like BRCT domain 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
CBS-domain pair MgtE membrane domain-like 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Pseudouridine synthase PUA domain-like 11
Protein kinase-like (PK-like) PLP-dependent transferases 11
alpha/beta-Hydrolases S-adenosyl-L-methionine-dependent methyltransferases 11
Duplicated hybrid motif Phosphoenolpyruvate/pyruvate domain 11
Aldolase AFP III-like domain 11
PHP14-like Phospholipase D/nuclease 11
PIN domain-like Ribonuclease H-like 11
DNA-glycosylase Nudix 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Ribosomal protein L6 Ribosomal protein L6 11
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Pectin lyase-like Cadherin-like 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
FMN-binding split barrel Riboflavin synthase domain-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
PH0987 N-terminal domain-like Single hybrid motif 11
P-loop containing nucleoside triphosphate hydrolases beta-lactamase/transpeptidase-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Fibronectin type III Fibronectin type III 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
DNA primase core DNA primase DnaG, C-terminal domain 11
PP2C-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
HRDC-like HRDC-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
RNase III domain-like dsRNA-binding domain-like 11
TPR-like TPR-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain GAF domain-like 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Zn-dependent exopeptidases LysM domain 11
PLP-dependent transferases P-loop containing nucleoside triphosphate hydrolases 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 11
PreATP-grasp domain Cyclophilin-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Inosine monophosphate dehydrogenase (IMPDH) Nitrite and sulphite reductase 4Fe-4S domain-like 11
Translation proteins "Winged helix" DNA-binding domain 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
cAMP-binding domain-like CBS-domain pair 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Tex N-terminal region-like RuvA domain 2-like 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
Glucose permease domain IIB Glucose permease domain IIB 11
YajQ-like YajQ-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
"Winged helix" DNA-binding domain MOP-like 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Nucleotidylyl transferase YegP-like 11
GAF domain-like Phosphohistidine domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Ribbon-helix-helix ALDH-like 11
FAD/NAD(P)-binding domain Folate-binding domain 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
6-phosphogluconate dehydrogenase C-terminal domain-like EPT/RTPC-like 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]