SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Rhodoferax ferrireducens T118

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

736 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4924
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 351
PYP-like sensor domain (PAS domain) Nucleotide cyclase 3323
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3216
EAL domain-like Nucleotide cyclase 3019
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 2820
CheY-like C-terminal effector domain of the bipartite response regulators 273
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 243
PYP-like sensor domain (PAS domain) EAL domain-like 2316
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 225
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 192
Thiolase-like Thiolase-like 181
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1713
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 162
Actin-like ATPase domain Actin-like ATPase domain 154
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 144
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 146
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1410
P-loop containing nucleoside triphosphate hydrolases MOP-like 141
PYP-like sensor domain (PAS domain) CheY-like 1311
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 123
GroES-like NAD(P)-binding Rossmann-fold domains 122
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 126
CheY-like Homeodomain-like 123
CheY-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1211
cAMP-binding domain-like "Winged helix" DNA-binding domain 122
CheY-like P-loop containing nucleoside triphosphate hydrolases 123
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 114
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 115
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 114
Thioredoxin-like GST C-terminal domain-like 112
Homodimeric domain of signal transducing histidine kinase CheY-like 109
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 95
P-loop containing nucleoside triphosphate hydrolases Translation proteins 95
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 82
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 82
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 87
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 84
PreATP-grasp domain Rudiment single hybrid motif 82
Calcium ATPase, transduction domain A HAD-like 87
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 84
Calcium ATPase, transmembrane domain M HAD-like 87
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 82
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 74
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 73
TPR-like TPR-like 76
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 74
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 73
"Winged helix" DNA-binding domain GAF domain-like 71
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 73
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 74
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 72
Cytochrome c Cytochrome c 72
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 73
Nucleotide cyclase CheY-like 76
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 73
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 73
EAL domain-like CheY-like 65
PYP-like sensor domain (PAS domain) GAF domain-like 66
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 64
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 61
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 65
GAF domain-like Nucleotide cyclase 66
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 65
GAF domain-like EAL domain-like 66
PurM N-terminal domain-like PurM C-terminal domain-like 63
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 64
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 55
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 53
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 54
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 51
"Winged helix" DNA-binding domain Chorismate lyase-like 51
Translation proteins EF-G C-terminal domain-like 53
Phospholipase D/nuclease Phospholipase D/nuclease 53
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 53
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 53
Alpha-L RNA-binding motif Pseudouridine synthase 52
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 53
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 55
ClpP/crotonase ClpP/crotonase 53
(Trans)glycosidases Glycosyl hydrolase domain 53
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 52
Homeodomain-like SIS domain 51
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 42
E set domains (Trans)glycosidases 42
Enolase N-terminal domain-like Enolase C-terminal domain-like 41
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 42
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
Lysozyme-like beta-lactamase/transpeptidase-like 42
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 41
Rudiment single hybrid motif Single hybrid motif 41
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 42
Glutathione synthetase ATP-binding domain-like Single hybrid motif 41
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 42
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 42
DNA methylase specificity domain DNA methylase specificity domain 41
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
Homeodomain-like Homeodomain-like 43
HMA, heavy metal-associated domain HAD-like 44
Single hybrid motif CoA-dependent acyltransferases 42
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 42
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 43
PreATP-grasp domain Single hybrid motif 41
ACT-like ACT-like 44
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 42
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 41
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
Triger factor/SurA peptide-binding domain-like FKBP-like 44
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 44
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 31
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
CheY-like CheY-like 33
Histidine-containing phosphotransfer domain, HPT domain CheW-like 33
alpha-helical ferredoxin Nucleotide-binding domain 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 32
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 31
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 32
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 31
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 33
Nqo1 middle domain-like Nqo1C-terminal domain-like 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Aspartate/glutamate racemase Aspartate/glutamate racemase 31
Nucleic acid-binding proteins RuvA domain 2-like 33
Nucleotide-binding domain Nucleotide-binding domain 33
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 31
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
HD-domain/PDEase-like Nucleotidyltransferase 32
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Thiamin diphosphate-binding fold (THDP-binding) 33
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 32
Multiheme cytochromes Multiheme cytochromes 32
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 31
Homodimeric domain of signal transducing histidine kinase CheW-like 33
lambda repressor-like DNA-binding domains RmlC-like cupins 32
ParB/Sulfiredoxin KorB DNA-binding domain-like 31
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 33
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 31
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 32
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 32
Nucleotidyltransferase ACT-like 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 31
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
GroES-like GroES-like 31
Trypsin-like serine proteases PDZ domain-like 32
CheY-like Histidine-containing phosphotransfer domain, HPT domain 33
"Winged helix" DNA-binding domain PLP-dependent transferases 31
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
HD-domain/PDEase-like ACT-like 32
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 32
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 33
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 32
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
alpha/beta-Hydrolases beta-Roll 33
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 32
HD-domain/PDEase-like GAF domain-like 33
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
Chaperone J-domain HSP40/DnaJ peptide-binding domain 33
PLP-binding barrel Alanine racemase C-terminal domain-like 32
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 33
E set domains Glycosyl hydrolase domain 31
Sensory domain-like PYP-like sensor domain (PAS domain) 33
P-loop containing nucleoside triphosphate hydrolases TPR-like 32
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 31
tRNA-binding arm Class II aaRS and biotin synthetases 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 21
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 21
Trimeric LpxA-like enzymes RmlC-like cupins 21
HlyD-like secretion proteins HlyD-like secretion proteins 22
Nqo5-like HydB/Nqo4-like 21
CBS-domain pair Nucleotide cyclase 22
PDZ domain-like PDZ domain-like 21
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 22
GroEL-intermediate domain like GroEL apical domain-like 22
beta-Roll beta-Roll 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Thioredoxin-like Nqo1 middle domain-like 22
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 22
Thioredoxin-like Nqo1 FMN-binding domain-like 22
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 22
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
HAMP domain-like Nucleotide cyclase 22
MoeA N-terminal region -like MoeA C-terminal domain-like 21
Translation proteins Ribosomal protein S5 domain 2-like 21
Class I glutamine amidotransferase-like Homeodomain-like 22
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 21
Formyltransferase FMT C-terminal domain-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III TK C-terminal domain-like 22
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 22
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 21
CheW-like CheY-like 22
RmlC-like cupins Homeodomain-like 22
MetI-like MetI-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 21
Cobalamin (vitamin B12)-binding domain Cobalamin (vitamin B12)-dependent enzymes 22
GAF domain-like Homodimeric domain of signal transducing histidine kinase 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 21
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 22
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Aconitase iron-sulfur domain LeuD/IlvD-like 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 21
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
Lysozyme-like PGBD-like 21
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 22
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 22
Nucleotide cyclase Hemerythrin-like 22
MFS general substrate transporter S-adenosyl-L-methionine-dependent methyltransferases 21
PUA domain-like Ribosomal protein S5 domain 2-like 21
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
HD-domain/PDEase-like TGS-like 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 21
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
GroEL equatorial domain-like GroEL apical domain-like 22
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, catalytic domain 22
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 21
ISP domain Bet v1-like 21
Sensory domain-like Nucleotide cyclase 22
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 22
TGS-like ACT-like 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
CheY-like Methylesterase CheB, C-terminal domain 21
DNA clamp DNA clamp 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
HCP-like Lysozyme-like 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Thioredoxin-like TPR-like 21
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 21
CheY-like TPR-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 22
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 21
L30e-like alpha/beta knot 21
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
PH0987 N-terminal domain-like Cyclophilin-like 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 22
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 21
Sensory domain-like HAMP domain-like 22
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
GroEL equatorial domain-like GroEL-intermediate domain like 22
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 22
TPR-like C-terminal effector domain of the bipartite response regulators 21
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 22
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 22
Nucleotidyltransferase TGS-like 21
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 22
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 21
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
Thioredoxin-like Nqo1C-terminal domain-like 22
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 21
GAF domain-like CheY-like 22
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
PIN domain-like DNA/RNA polymerases 11
Homeodomain-like TATA-box binding protein-like 11
Putative DNA-binding domain lambda repressor-like DNA-binding domains 11
PreATP-grasp domain PreATP-grasp domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Homeodomain-like Acetyl-CoA synthetase-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Class II aaRS and biotin synthetases Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Ribonuclease H-like DNA/RNA polymerases 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
4Fe-4S ferredoxins Riboflavin synthase domain-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins Translation proteins 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Aldolase post-HMGL domain-like 11
Cupredoxins Cytochrome c 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Methylglyoxal synthase-like Methylglyoxal synthase-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
GAF domain-like Homeodomain-like 11
EspE N-terminal domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Rhodanese/Cell cycle control phosphatase P-loop containing nucleoside triphosphate hydrolases 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Cytidine deaminase-like alpha/beta-Hydrolases 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Nudix Metallo-hydrolase/oxidoreductase 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
HAMP domain-like CheY-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
alpha-helical ferredoxin Ferredoxin reductase-like, C-terminal NADP-linked domain 11
TPR-like EAL domain-like 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Protein kinase-like (PK-like) GAF domain-like 11
TGS-like Class II aaRS and biotin synthetases 11
GAF domain-like GAF domain-like 11
Zinc beta-ribbon DNA primase core 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
TPR-like Nucleotide cyclase 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
UraD-Like Bacterial exopeptidase dimerisation domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
PheT/TilS domain Putative DNA-binding domain 11
UraD-Like Zn-dependent exopeptidases 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
RNase III domain-like dsRNA-binding domain-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Bacterial muramidases Lysozyme-like 11
Protein kinase-like (PK-like) HD-domain/PDEase-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Periplasmic binding protein-like II EAL domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Nucleic acid-binding proteins GAD domain-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
FAD/NAD(P)-binding domain PurM N-terminal domain-like 11
EspE N-terminal domain-like CheW-like 11
Thioesterase/thiol ester dehydrase-isomerase Isocitrate/Isopropylmalate dehydrogenase-like 11
PUA domain-like alpha/beta knot 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
HD-domain/PDEase-like Homodimeric domain of signal transducing histidine kinase 11
GIY-YIG endonuclease RuvA domain 2-like 11
Periplasmic binding protein-like II HD-domain/PDEase-like 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
FMN-binding split barrel UbiD C-terminal domain-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Nucleotidylyl transferase YegP-like 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
MalF N-terminal region-like MetI-like 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
OMPA-like OmpA-like 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Periplasmic binding protein-like II Nucleotide cyclase 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Nucleotide cyclase SMAD/FHA domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Tex N-terminal region-like Ribonuclease H-like 11
D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain Cobalamin (vitamin B12)-binding domain 11
Nucleotide-binding domain Riboflavin synthase domain-like 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
"Winged helix" DNA-binding domain Rhodanese/Cell cycle control phosphatase 11
ClpP/crotonase NfeD domain-like 11
YjeF N-terminal domain-like Ribokinase-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 11
HD-domain/PDEase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
2Fe-2S ferredoxin-like ADC-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Ferritin-like HAD-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
HAD-like HAD-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Translation proteins PRC-barrel domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Phase 1 flagellin Phase 1 flagellin 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
FliG FliG 11
Translation proteins ThrRS/AlaRS common domain 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
EAL domain-like CBS-domain pair 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
DNA polymerase beta, N-terminal domain-like Sec63 N-terminal domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
DNA polymerase beta, N-terminal domain-like PHP domain-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
ACP-like Acetyl-CoA synthetase-like 11
DNA polymerase beta, N-terminal domain-like Nucleotidyltransferase 11
PYP-like sensor domain (PAS domain) HD-domain/PDEase-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
CheY-like Thioredoxin-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
beta-Roll Cadherin-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
PDZ domain-like ClpP/crotonase 11
Putative DNA-binding domain RmlC-like cupins 11
PLP-dependent transferases PLP-dependent transferases 11
Single hybrid motif Single hybrid motif 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Histidine-containing phosphotransfer domain, HPT domain EspE N-terminal domain-like 11
ACT-like Formyltransferase 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
HAMP domain-like GAF domain-like 11
EPT/RTPC-like P-loop containing nucleoside triphosphate hydrolases 11
RuvA domain 2-like BRCT domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
TGS-like ThrRS/AlaRS common domain 11
(Trans)glycosidases (Trans)glycosidases 11
TATA-box binding protein-like DNA-glycosylase 11
GroEL-intermediate domain like GroEL-intermediate domain like 11
RmlC-like cupins AhpD-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Hsp33 domain HSP33 redox switch-like 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Toll/Interleukin receptor TIR domain TPR-like 11
PRTase-like PRTase-like 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
FAD-linked oxidoreductase ALDH-like 11
Chorismate mutase II ACT-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
GAF domain-like EspE N-terminal domain-like 11
Pili subunits Pili subunits 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidyltransferase PHP domain-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
PurS-like PurM C-terminal domain-like 11
DNA-glycosylase Nudix 11
Dihydropteroate synthetase-like Methionine synthase domain 11
TPR-like NTF2-like 11
Acetyl-CoA synthetase-like Glycerol-3-phosphate (1)-acyltransferase 11
SMAD/FHA domain SMAD/FHA domain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 11
Periplasmic binding protein-like II GAF domain-like 11
4Fe-4S ferredoxins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
"Winged helix" DNA-binding domain MOP-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
Tex N-terminal region-like RuvA domain 2-like 11
Tetracyclin repressor-like, C-terminal domain Acetyl-CoA synthetase-like 11
Galactose mutarotase-like E set domains 11
TPR-like PYP-like sensor domain (PAS domain) 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
PHP14-like Phospholipase D/nuclease 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
CarD-like TRCF domain-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Single hybrid motif ClpP/crotonase 11
FKBP-like FKBP-like 11
Trigger factor ribosome-binding domain FKBP-like 11
alpha-helical ferredoxin Riboflavin synthase domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
MOP-like MOP-like 11
Homeodomain-like DNA-glycosylase 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
CheY-like HD-domain/PDEase-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
4Fe-4S ferredoxins HydA/Nqo6-like 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Periplasmic binding protein-like II ACT-like 11
Ribosome binding protein Y (YfiA homologue) Nucleic acid-binding proteins 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Nucleotide-binding domain NTF2-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Ribonuclease H-like RuvA domain 2-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Acyl-CoA N-acyltransferases (Nat) Nucleotidylyl transferase 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
FAD/NAD(P)-binding domain PurM C-terminal domain-like 11
Putative DNA-binding domain Translation proteins 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
4Fe-4S ferredoxins ADC-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
alpha/beta-Hydrolases Cadherin-like 11
TK C-terminal domain-like 4Fe-4S ferredoxins 11
Nucleic acid-binding proteins BRCT domain 11
lambda repressor-like DNA-binding domains TPR-like 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
HlyD-like secretion proteins Outer membrane efflux proteins (OEP) 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
RuvA domain 2-like JAB1/MPN domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Ribonuclease H-like GIY-YIG endonuclease 11
Porins Porins 11
YajQ-like YajQ-like 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
YegP-like YegP-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
RuvA domain 2-like RuvA domain 2-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
Sec63 N-terminal domain-like PHP domain-like 11
Nucleotide-binding domain 4Fe-4S ferredoxins 11
TGS-like Class II aaRS ABD-related 11
Nucleotidylyl transferase tRNA-binding arm 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
DinB/YfiT-like putative metalloenzymes C-type lectin-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Ribosomal protein L6 Ribosomal protein L6 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
PurS-like Class I glutamine amidotransferase-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
PYP-like sensor domain (PAS domain) Hemerythrin-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
HCP-like HCP-like 11
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Cyclophilin-like Cyclophilin-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
cAMP-binding domain-like CBS-domain pair 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Carbamate kinase-like ACT-like 11
Macro domain-like Zn-dependent exopeptidases 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
Carbamate kinase-like PUA domain-like 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
CheC-like Surface presentation of antigens (SPOA) 11
YgfB-like Sec-C motif 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
FMT C-terminal domain-like ClpP/crotonase 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
YrdC/RibB RibA-like 11
TPR-like HCP-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Prokaryotic type I DNA topoisomerase SWIB/MDM2 domain 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
HCP-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
FAD/NAD(P)-binding domain NTF2-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Formyltransferase ClpP/crotonase 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Single hybrid motif FAD/NAD(P)-binding domain 11
HprK N-terminal domain-like PEP carboxykinase-like 11
CBS-domain pair PYP-like sensor domain (PAS domain) 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Thioesterase/thiol ester dehydrase-isomerase Acyl-CoA N-acyltransferases (Nat) 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
FMN-linked oxidoreductases NTF2-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
PurS-like PurM N-terminal domain-like 11
Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldehyde ferredoxin oxidoreductase, C-terminal domains 11
Cobalamin (vitamin B12)-binding domain P-loop containing nucleoside triphosphate hydrolases 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
"Winged helix" DNA-binding domain Actin-like ATPase domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Sec63 N-terminal domain-like Nucleotidyltransferase 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Cobalamin (vitamin B12)-dependent enzymes 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
CBS-domain pair CBS-domain pair 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
EspE N-terminal domain-like Homodimeric domain of signal transducing histidine kinase 11
Ribbon-helix-helix ALDH-like 11
Nucleotide-binding domain Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
PurS-like FGAM synthase PurL, linker domain 11
PPK N-terminal domain-like PHP14-like 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, peptide-binding domain 11
ACP-like Glycerol-3-phosphate (1)-acyltransferase 11
Sensory domain-like EAL domain-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
Ferritin-like Calcium ATPase, transduction domain A 11
alpha-helical ferredoxin alpha-helical ferredoxin 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
PIN domain-like Ribonuclease H-like 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Outer membrane efflux proteins (OEP) OmpA-like 11
TTHA1013/TTHA0281-like Ribbon-helix-helix 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11

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