SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Cupriavidus metallidurans CH34

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Domain combination pairs

737 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 1243
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 5320
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 525
CheY-like C-terminal effector domain of the bipartite response regulators 484
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 304
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2813
"Winged helix" DNA-binding domain GAF domain-like 282
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 262
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 237
Thiolase-like Thiolase-like 221
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 216
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 216
GroES-like NAD(P)-binding Rossmann-fold domains 213
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 216
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 216
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 205
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 205
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 203
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 192
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 187
Cytochrome c Cytochrome c 187
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 188
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 177
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 174
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 169
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 155
Thioredoxin-like GST C-terminal domain-like 143
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1411
Actin-like ATPase domain Actin-like ATPase domain 134
Homeodomain-like Homeodomain-like 137
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 134
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 123
Homodimeric domain of signal transducing histidine kinase CheY-like 129
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 126
Nucleotide cyclase EAL domain-like 129
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 123
PYP-like sensor domain (PAS domain) Nucleotide cyclase 119
Calcium ATPase, transduction domain A HAD-like 118
HAD-like Calcium ATPase, transmembrane domain M 118
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 118
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 115
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 112
"Winged helix" DNA-binding domain PLP-dependent transferases 112
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 104
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 101
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1010
P-loop containing nucleoside triphosphate hydrolases Translation proteins 95
PreATP-grasp domain Rudiment single hybrid motif 94
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 94
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 94
ParB/Sulfiredoxin KorB DNA-binding domain-like 83
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 81
"Winged helix" DNA-binding domain Chorismate lyase-like 81
HlyD-like secretion proteins HlyD-like secretion proteins 82
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 88
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 86
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 83
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 84
cAMP-binding domain-like "Winged helix" DNA-binding domain 82
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 83
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 83
CheY-like P-loop containing nucleoside triphosphate hydrolases 83
HMA, heavy metal-associated domain HAD-like 75
Histidine-containing phosphotransfer domain, HPT domain CheY-like 75
CheY-like Homeodomain-like 73
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 77
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 76
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 75
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 75
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 74
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 72
P-loop containing nucleoside triphosphate hydrolases MOP-like 71
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 74
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 64
Lysozyme-like beta-lactamase/transpeptidase-like 64
Phospholipase D/nuclease Phospholipase D/nuclease 65
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 62
PYP-like sensor domain (PAS domain) EAL domain-like 66
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 61
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 64
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 64
Resolvase-like Homeodomain-like 61
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 63
PurM N-terminal domain-like PurM C-terminal domain-like 62
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 63
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 62
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 62
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 52
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 51
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 52
TPR-like TPR-like 55
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 52
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 55
Alpha-L RNA-binding motif Pseudouridine synthase 53
Glutathione synthetase ATP-binding domain-like Single hybrid motif 53
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 54
FKBP-like Triger factor/SurA peptide-binding domain-like 54
PapD-like Periplasmic chaperone C-domain 52
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 52
Homeodomain-like Ribonuclease H-like 53
ClpP/crotonase ClpP/crotonase 53
Enolase N-terminal domain-like Enolase C-terminal domain-like 51
Periplasmic binding protein-like II CheY-like 55
Rudiment single hybrid motif Single hybrid motif 53
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 53
Translation proteins EF-G C-terminal domain-like 53
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 54
ISP domain Bet v1-like 52
PreATP-grasp domain Single hybrid motif 53
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 52
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 52
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 55
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 42
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
Nqo1 middle domain-like Nqo1C-terminal domain-like 42
Aldolase post-HMGL domain-like 43
Cupredoxins Cupredoxins 43
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 41
PYP-like sensor domain (PAS domain) Homeodomain-like 42
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 42
RmlC-like cupins Homeodomain-like 42
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 41
PYP-like sensor domain (PAS domain) CheY-like 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Homeodomain-like SIS domain 42
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 42
CBS-domain pair FAD-binding/transporter-associated domain-like 41
LeuD/IlvD-like Aconitase iron-sulfur domain 42
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 42
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 42
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 44
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 42
Nucleic acid-binding proteins RuvA domain 2-like 33
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 32
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
ACT-like ACT-like 33
Single hybrid motif CoA-dependent acyltransferases 32
Periplasmic binding protein-like II Periplasmic binding protein-like II 33
CheW-like CheY-like 33
PK beta-barrel domain-like PK C-terminal domain-like 31
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
DsbC/DsbG N-terminal domain-like Thioredoxin-like 32
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 32
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 32
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Class I glutamine amidotransferase-like Homeodomain-like 31
Trypsin-like serine proteases PDZ domain-like 32
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 32
Flavoproteins Riboflavin synthase domain-like 32
GAF domain-like Homeodomain-like 33
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 31
Cytochrome c C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 31
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 33
HD-domain/PDEase-like ACT-like 33
CBS-domain pair Nucleotide cyclase 33
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 32
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 32
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
HD-domain/PDEase-like Nucleotidyltransferase 33
Formyltransferase FMT C-terminal domain-like 32
Histidine-containing phosphotransfer domain, HPT domain CheW-like 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
Nucleotidyltransferase ACT-like 33
lambda repressor-like DNA-binding domains RmlC-like cupins 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 32
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
PLP-binding barrel Alanine racemase C-terminal domain-like 32
EAL domain-like CBS-domain pair 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
PDZ domain-like PDZ domain-like 32
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 33
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 31
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
Metallo-hydrolase/oxidoreductase SCP-like 31
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 21
HMA, heavy metal-associated domain FAD/NAD(P)-binding domain 21
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 22
PreATP-grasp domain ClpP/crotonase 21
Ribonuclease H-like DNA/RNA polymerases 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 22
cAMP-binding domain-like FAD/NAD(P)-binding domain 21
PrpR receptor domain-like Homeodomain-like 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Rudiment single hybrid motif ClpP/crotonase 21
Phase 1 flagellin Phase 1 flagellin 21
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 21
HAMP domain-like PYP-like sensor domain (PAS domain) 22
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 22
GAF domain-like Nucleotide cyclase 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
4Fe-4S ferredoxins ADC-like 21
Galactose mutarotase-like E set domains 21
MoeA N-terminal region -like MoeA C-terminal domain-like 21
PilZ domain-like PilZ domain-like 21
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 21
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 22
CBS-domain pair PYP-like sensor domain (PAS domain) 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Single hybrid motif FAD/NAD(P)-binding domain 21
Galactose-binding domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, peptide-binding domain 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
DinB/YfiT-like putative metalloenzymes C-type lectin-like 21
Thioredoxin-like Nqo1 FMN-binding domain-like 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 21
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 21
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 22
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 21
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 22
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 22
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 21
HD-domain/PDEase-like TGS-like 22
CheY-like Methylesterase CheB, C-terminal domain 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
2Fe-2S ferredoxin-like ADC-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 22
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 22
PrpR receptor domain-like PYP-like sensor domain (PAS domain) 21
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
TPR-like C-terminal effector domain of the bipartite response regulators 21
MOP-like MOP-like 22
Thioredoxin-like Nqo1C-terminal domain-like 21
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 21
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 21
P-loop containing nucleoside triphosphate hydrolases TPR-like 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 22
Aspartate receptor, ligand-binding domain Methyl-accepting chemotaxis protein (MCP) signaling domain 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
Phage tail proteins Phage tail proteins 21
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 21
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 21
L30e-like alpha/beta knot 21
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 21
Translation proteins Ribosomal protein S5 domain 2-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 21
Thioredoxin-like Nqo1 middle domain-like 21
PrpR receptor domain-like P-loop containing nucleoside triphosphate hydrolases 21
2Fe-2S ferredoxin-like alpha-helical ferredoxin 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 21
MFS general substrate transporter S-adenosyl-L-methionine-dependent methyltransferases 22
GroES-like GroES-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 22
Regulatory protein AraC Homeodomain-like 21
Glutathione synthetase ATP-binding domain-like ClpP/crotonase 21
Cytochrome P450 Ferredoxin reductase-like, C-terminal NADP-linked domain 22
HD-domain/PDEase-like GAF domain-like 22
Nucleotidyltransferase TGS-like 22
Nucleotide-diphospho-sugar transferases PilZ domain-like 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 22
Cupredoxins Cytochrome c 22
HMA, heavy metal-associated domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 21
Phage tail proteins gp5 N-terminal domain-like 21
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 22
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 22
alpha/beta-Hydrolases NTF2-like 21
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 21
Translation proteins ThrRS/AlaRS common domain 22
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
Cytochrome P450 Riboflavin synthase domain-like 22
TGS-like ACT-like 22
GAF domain-like Homodimeric domain of signal transducing histidine kinase 22
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 21
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, catalytic domain 21
Single hybrid motif ClpP/crotonase 21
Clc chloride channel CBS-domain pair 22
MesJ substrate recognition domain-like PheT/TilS domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Ligand-binding domain in the NO signalling and Golgi transport Homeodomain-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
PreATP-grasp domain post-HMGL domain-like 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
Nudix Metallo-hydrolase/oxidoreductase 11
FAD-linked oxidoreductase ALDH-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
Cadherin-like Cadherin-like 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
Cytochrome c Periplasmic binding protein-like I 11
PHP14-like Phospholipase D/nuclease 11
Cobalamin (vitamin B12)-binding domain Cobalamin (vitamin B12)-dependent enzymes 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
PurS-like Class I glutamine amidotransferase-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Trigger factor ribosome-binding domain FKBP-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Protein kinase-like (PK-like) GAF domain-like 11
FAD/NAD(P)-binding domain FMN-linked oxidoreductases 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
TGS-like ThrRS/AlaRS common domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
ACT-like Formyltransferase 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
HAMP domain-like GAF domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
CheY-binding domain of CheA CheW-like 11
Bet v1-like GST C-terminal domain-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Class II aaRS and biotin synthetases GAD domain-like 11
Macro domain-like Zn-dependent exopeptidases 11
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 11
Lysozyme-like LysM domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Pseudouridine synthase PUA domain-like 11
Cupredoxins Hypothetical protein PA1324 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
Tex N-terminal region-like RuvA domain 2-like 11
YajQ-like YajQ-like 11
Glutathione synthetase ATP-binding domain-like HAD-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
ClpP/crotonase NfeD domain-like 11
RuvA domain 2-like BRCT domain 11
TGS-like Class II aaRS and biotin synthetases 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Nucleotidylyl transferase Nudix 11
FKBP-like FKBP-like 11
PLP-dependent transferases PLP-dependent transferases 11
P-loop containing nucleoside triphosphate hydrolases Cobalamin (vitamin B12)-dependent enzymes 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YjgF-like 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Hypothetical protein PA1324 Pectin lyase-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
Pectin lyase-like Autotransporter 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Cobalamin (vitamin B12)-binding domain P-loop containing nucleoside triphosphate hydrolases 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
PYP-like sensor domain (PAS domain) GAF domain-like 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
MFS general substrate transporter MFS general substrate transporter 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
GAF domain-like EAL domain-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Formyltransferase ClpP/crotonase 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Rudiment single hybrid motif Aldolase 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
DNA-glycosylase Nudix 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
PreATP-grasp domain Methylglyoxal synthase-like 11
(Trans)glycosidases Glycoside hydrolase/deacetylase 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
LigB-like LigA subunit of an aromatic-ring-opening dioxygenase LigAB 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
PurS-like PurM N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
GroEL-intermediate domain like GroEL apical domain-like 11
Periplasmic binding protein-like II ACT-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Nucleic acid-binding proteins PheT/TilS domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Oxidoreductase molybdopterin-binding domain E set domains 11
CarD-like TRCF domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease H-like RuvA domain 2-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Bet v1-like Thioredoxin-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
vWA-like TPR-like 11
Putative DNA-binding domain Translation proteins 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Nucleic acid-binding proteins GAD domain-like 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Galactose-binding domain-like (Trans)glycosidases 11
Homeodomain-like TATA-box binding protein-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
HprK N-terminal domain-like PEP carboxykinase-like 11
4Fe-4S ferredoxins Riboflavin synthase domain-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Metalloproteases ("zincins"), catalytic domain alpha-D-mannose-specific plant lectins 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Nucleotidyltransferase Nucleotidyltransferase 11
RNase III domain-like dsRNA-binding domain-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Phosphoenolpyruvate/pyruvate domain Nucleotide-diphospho-sugar transferases 11
"Winged helix" DNA-binding domain MOP-like 11
RuvA domain 2-like RuvA domain 2-like 11
Homeodomain-like DNA-glycosylase 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
CheC-like Surface presentation of antigens (SPOA) 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
CBS-domain pair CBS-domain pair 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Single hybrid motif Single hybrid motif 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
PurS-like PurM C-terminal domain-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
PIN domain-like DNA/RNA polymerases 11
PPK N-terminal domain-like PHP14-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Nqo5-like HydB/Nqo4-like 11
Pili subunits GspK insert domain-like 11
Tex N-terminal region-like Ribonuclease H-like 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
Nucleic acid-binding proteins BRCT domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Globin-like Riboflavin synthase domain-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Cadherin-like Galactose oxidase, central domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
HAMP domain-like Nucleotide cyclase 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
YrdC/RibB RibA-like 11
NagB/RpiA/CoA transferase-like 4Fe-4S ferredoxins 11
Cupredoxins Pectin lyase-like 11
PIN domain-like Ribonuclease H-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
CheY-like Nucleotide cyclase 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
PUA domain-like alpha/beta knot 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Chorismate mutase II Periplasmic binding protein-like II 11
PurS-like FGAM synthase PurL, linker domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Ferritin-like Calcium ATPase, transduction domain A 11
Nucleotide-diphospho-sugar transferases TPR-like 11
Nucleotidylyl transferase tRNA-binding arm 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Bet v1-like Bet v1-like 11
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Carbamate kinase-like ACT-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
post-HMGL domain-like Single hybrid motif 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Pectin lyase-like Pectin lyase-like 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Chorismate mutase II ACT-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Cytochrome P450 2Fe-2S ferredoxin-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
Rhodanese/Cell cycle control phosphatase P-loop containing nucleoside triphosphate hydrolases 11
Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like 11
4Fe-4S ferredoxins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 11
FabD/lysophospholipase-like FabD/lysophospholipase-like 11
YjeF N-terminal domain-like Ribokinase-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Actin-like ATPase domain HD-domain/PDEase-like 11
PRTase-like PRTase-like 11
alpha-D-mannose-specific plant lectins alpha-D-mannose-specific plant lectins 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Bacterial muramidases Lysozyme-like 11
PheT/TilS domain Putative DNA-binding domain 11
alpha/beta-Hydrolases AhpD-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Protein kinase-like (PK-like) Homodimeric domain of signal transducing histidine kinase 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
DNA clamp DNA clamp 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
ParB/Sulfiredoxin Positive stranded ssRNA viruses 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
PreATP-grasp domain Aldolase 11
Cytochrome P450 Flavoproteins 11
Ligand-binding domain in the NO signalling and Golgi transport P-loop containing nucleoside triphosphate hydrolases 11
CheY-like EAL domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Protein kinase-like (PK-like) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
FMT C-terminal domain-like ClpP/crotonase 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Hsp33 domain HSP33 redox switch-like 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
FliG FliG 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Translation proteins PRC-barrel domain 11
PreATP-grasp domain PreATP-grasp domain 11
Class II aaRS and biotin synthetases Translation proteins 11
Ribonuclease H-like GIY-YIG endonuclease 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Rudiment single hybrid motif post-HMGL domain-like 11
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase NM domain-like 11
Periplasmic binding protein-like II MetI-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Carbamate kinase-like PUA domain-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Ribonuclease H-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Ribbon-helix-helix ALDH-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
DNA breaking-rejoining enzymes Homeodomain-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
UROD/MetE-like UROD/MetE-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Translation proteins Translation proteins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
TATA-box binding protein-like DNA-glycosylase 11
(Phosphotyrosine protein) phosphatases II FAD/NAD(P)-binding domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Aldolase Single hybrid motif 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
PDZ domain-like ClpP/crotonase 11
SIS domain CBS-domain pair 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Zinc beta-ribbon DNA primase core 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
Ferritin-like HAD-like 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Acetyl-CoA synthetase-like Thioesterase/thiol ester dehydrase-isomerase 11
MetI-like MetI-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
KorB DNA-binding domain-like Positive stranded ssRNA viruses 11
TGS-like Class II aaRS ABD-related 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Thioredoxin-like TPR-like 11
Periplasmic binding protein-like II Lysozyme-like 11

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