SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Pseudomonas entomophila L48

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

825 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 972
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 5525
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3315
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 244
Homeodomain-like Homeodomain-like 218
CheY-like C-terminal effector domain of the bipartite response regulators 191
Nucleotide cyclase EAL domain-like 1911
Acetyl-CoA synthetase-like ACP-like 1916
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1816
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 183
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 187
CoA-dependent acyltransferases CoA-dependent acyltransferases 1815
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 184
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 185
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1712
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 1714
ACP-like CoA-dependent acyltransferases 1714
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 166
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 162
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1611
Thioredoxin-like GST C-terminal domain-like 151
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 153
Homodimeric domain of signal transducing histidine kinase CheY-like 1513
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 145
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 141
PYP-like sensor domain (PAS domain) Nucleotide cyclase 1412
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 135
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1312
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 127
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 122
Actin-like ATPase domain Actin-like ATPase domain 125
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 122
Thiolase-like Thiolase-like 121
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 122
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 122
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 122
"Winged helix" DNA-binding domain PLP-dependent transferases 121
GroES-like NAD(P)-binding Rossmann-fold domains 122
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 121
ACP-like ACP-like 1110
Phage tail proteins Phage tail proteins 114
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 111
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 1110
P-loop containing nucleoside triphosphate hydrolases MOP-like 111
PYP-like sensor domain (PAS domain) EAL domain-like 119
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 114
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 114
CheY-like P-loop containing nucleoside triphosphate hydrolases 102
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 105
Phage tail proteins gp5 N-terminal domain-like 103
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 104
gp5 N-terminal domain-like Phage fibre proteins 92
CheY-like Homeodomain-like 91
Cytochrome c Cytochrome c 95
Phage tail proteins Phage fibre proteins 92
P-loop containing nucleoside triphosphate hydrolases Translation proteins 97
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 83
PYP-like sensor domain (PAS domain) CheY-like 87
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 81
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 83
ACT-like ACT-like 84
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 82
HlyD-like secretion proteins HlyD-like secretion proteins 82
PYP-like sensor domain (PAS domain) Homeodomain-like 75
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 76
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 73
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 73
RmlC-like cupins Homeodomain-like 62
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 65
HAD-like Calcium ATPase, transmembrane domain M 64
CheY-like Histidine-containing phosphotransfer domain, HPT domain 66
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
MetI-like MetI-like 63
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 64
PreATP-grasp domain Rudiment single hybrid motif 62
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 66
Class I glutamine amidotransferase-like Homeodomain-like 62
CheY-like CheY-like 65
ACP-like alpha/beta-Hydrolases 65
Calcium ATPase, transduction domain A HAD-like 64
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 63
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 62
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 62
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 62
GAF domain-like Homodimeric domain of signal transducing histidine kinase 66
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 64
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 66
PLP-binding barrel Alanine racemase C-terminal domain-like 62
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 53
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 52
PYP-like sensor domain (PAS domain) GAF domain-like 55
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 53
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 54
CheW-like CheY-like 54
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 53
CoA-dependent acyltransferases alpha/beta-Hydrolases 54
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 53
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 52
Phospholipase D/nuclease Phospholipase D/nuclease 53
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 53
Alpha-L RNA-binding motif Pseudouridine synthase 52
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 51
Cupredoxins Cupredoxins 54
lambda repressor-like DNA-binding domains RmlC-like cupins 51
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 41
Lysozyme-like beta-lactamase/transpeptidase-like 44
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
Homeodomain-like SIS domain 41
Nucleic acid-binding proteins RuvA domain 2-like 44
"Winged helix" DNA-binding domain Chorismate lyase-like 41
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 44
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 44
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 44
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
CBS-domain pair FAD-binding/transporter-associated domain-like 41
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 42
Triger factor/SurA peptide-binding domain-like FKBP-like 44
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 42
Folate-binding domain Aminomethyltransferase beta-barrel domain 42
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 42
P-loop containing nucleoside triphosphate hydrolases GAF domain-like 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 43
Translation proteins EF-G C-terminal domain-like 43
PurM N-terminal domain-like PurM C-terminal domain-like 42
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 33
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 31
lambda repressor-like DNA-binding domains LexA/Signal peptidase 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
Nucleotidyltransferase ACT-like 32
E set domains (Trans)glycosidases 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Pectin lyase-like Autotransporter 32
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
TPR-like TPR-like 33
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 31
cAMP-binding domain-like "Winged helix" DNA-binding domain 31
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 32
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 32
TSP type-3 repeat OmpA-like 33
Single hybrid motif CoA-dependent acyltransferases 32
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 33
Histidine-containing phosphotransfer domain, HPT domain CheW-like 33
HD-domain/PDEase-like ACT-like 32
ACT-like P-loop containing nucleoside triphosphate hydrolases 32
HD-domain/PDEase-like Nucleotidyltransferase 32
GAF domain-like Homeodomain-like 32
HMA, heavy metal-associated domain HAD-like 33
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 33
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 31
Regulatory protein AraC Homeodomain-like 31
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
ISP domain Bet v1-like 32
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 31
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 33
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 33
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
Aconitase iron-sulfur domain LeuD/IlvD-like 33
ACP-like NAD(P)-binding Rossmann-fold domains 33
Tricorn protease N-terminal domain Tricorn protease N-terminal domain 32
Enolase N-terminal domain-like Enolase C-terminal domain-like 31
(Trans)glycosidases Glycosyl hydrolase domain 33
CheY-like Nucleotide cyclase 33
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 33
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 32
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 33
GAF domain-like CheY-like 33
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 31
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
Homeodomain-like Ribonuclease H-like 31
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 32
ACP-like Thiolase-like 22
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 21
NAD(P)-binding Rossmann-fold domains alpha/beta-Hydrolases 22
PK beta-barrel domain-like PK C-terminal domain-like 21
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Nucleotidyltransferase TGS-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 21
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 21
GroES-like GroES-like 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 22
"Winged helix" DNA-binding domain GAF domain-like 21
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 22
4Fe-4S ferredoxins ADC-like 21
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 22
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 21
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 22
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
HPr-like Phosphoenolpyruvate/pyruvate domain 22
Subtilisin-like Autotransporter 21
Periplasmic binding protein-like II Lysozyme-like 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
beta-Roll beta-Roll 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 21
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 22
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 21
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Flavoproteins Riboflavin synthase domain-like 22
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
HAMP domain-like PYP-like sensor domain (PAS domain) 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
"Winged helix" DNA-binding domain LexA/Signal peptidase 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
PDZ domain-like PDZ domain-like 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
CheY-like Methylesterase CheB, C-terminal domain 21
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
RuvA domain 2-like RuvA domain 2-like 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 22
E set domains E set domains 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 22
HAMP domain-like CheY-like 22
TPR-like C-terminal effector domain of the bipartite response regulators 22
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 22
Periplasmic binding protein-like II Periplasmic binding protein-like II 22
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
Aldolase post-HMGL domain-like 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
TGS-like ACT-like 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 22
2Fe-2S ferredoxin-like ADC-like 21
HPr-like Phosphohistidine domain 22
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 22
Periplasmic binding protein-like II CheY-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 22
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 21
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
Nucleotide-diphospho-sugar transferases RmlC-like cupins 21
ACT-like Formyltransferase 21
Ribonuclease H-like DNA/RNA polymerases 22
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
GAF domain-like Nucleotide cyclase 22
Thiolase-like FabD/lysophospholipase-like 22
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 21
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 22
PLP-dependent transferases PLP-dependent transferases 21
HCP-like HCP-like 22
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
vWA-like beta-Roll 22
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
PDZ domain-like ClpP/crotonase 21
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 22
alpha-helical ferredoxin Nucleotide-binding domain 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 21
DsbC/DsbG N-terminal domain-like Thioredoxin-like 22
TrkA C-terminal domain-like TrkA C-terminal domain-like 22
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 21
PUA domain-like Ribosomal protein S5 domain 2-like 22
Trypsin-like serine proteases PDZ domain-like 22
Translation proteins Ribosomal protein S5 domain 2-like 21
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 21
HD-domain/PDEase-like TGS-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
MOP-like MOP-like 22
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
YrdC/RibB RibA-like 21
E set domains Glycosyl hydrolase domain 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
Homeodomain-like Probable bacterial effector-binding domain 21
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 21
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Concanavalin A-like lectins/glucanases Concanavalin A-like lectins/glucanases 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
FKBP-like FKBP-like 11
Receptor-binding domain of short tail fibre protein gp12 Receptor-binding domain of short tail fibre protein gp12 11
Periplasmic binding protein-like II ACT-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
FabD/lysophospholipase-like FabD/lysophospholipase-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Thioredoxin-like TPR-like 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
alpha/beta-Hydrolases beta-Roll 11
NAD(P)-binding Rossmann-fold domains RmlC-like cupins 11
ACT-like HAD-like 11
ADC-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Macro domain-like Zn-dependent exopeptidases 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Tricorn protease N-terminal domain Colicin D/E5 nuclease domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
L domain-like Protein kinase-like (PK-like) 11
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Chorismate mutase II Periplasmic binding protein-like II 11
Cytochrome c E set domains 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
P-loop containing nucleoside triphosphate hydrolases Sporulation related repeat 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
ISP domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Flavoproteins 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Translation proteins "Winged helix" DNA-binding domain 11
Inosine monophosphate dehydrogenase (IMPDH) Nitrite and sulphite reductase 4Fe-4S domain-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Translation proteins PRC-barrel domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Pectin lyase-like Sialidases 11
Nucleic acid-binding proteins PheT/TilS domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Phase 1 flagellin Phase 1 flagellin 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Lysozyme-like PGBD-like 11
Nucleotide-diphospho-sugar transferases EspE N-terminal domain-like 11
CoA-dependent acyltransferases FMN-dependent nitroreductase-like 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
TTHA1013/TTHA0281-like Ribbon-helix-helix 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
(Phosphotyrosine protein) phosphatases II Autotransporter 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
EAL domain-like CBS-domain pair 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
P-loop containing nucleoside triphosphate hydrolases Adenine nucleotide alpha hydrolases-like 11
TGS-like ThrRS/AlaRS common domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Nudix Thiamin phosphate synthase 11
TATA-box binding protein-like DNA-glycosylase 11
Tex N-terminal region-like RuvA domain 2-like 11
TerB-like Chaperone J-domain 11
LysM domain LysM domain 11
GroEL-intermediate domain like GroEL apical domain-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Pili subunits GspK insert domain-like 11
PIN domain-like DNA/RNA polymerases 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
alpha/beta-Hydrolases S-adenosyl-L-methionine-dependent methyltransferases 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
FMN-binding split barrel Riboflavin synthase domain-like 11
PIN domain-like Ribonuclease H-like 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Hsp33 domain HSP33 redox switch-like 11
Pili subunits RuvA domain 2-like 11
Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Sensory domain-like Sensory domain-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Phoshotransferase/anion transport protein Phosphohistidine domain 11
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 11
Galactose mutarotase-like E set domains 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Pseudouridine synthase PUA domain-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
CBS-domain pair MgtE membrane domain-like 11
SH3-domain SH3-domain 11
FAD/NAD(P)-binding domain Folate-binding domain 11
NAD(P)-binding Rossmann-fold domains P-loop containing nucleoside triphosphate hydrolases 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
L30e-like alpha/beta knot 11
RmlC-like cupins Nucleotidylyl transferase 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Thioredoxin-like Cytochrome c 11
ClpP/crotonase ClpP/crotonase 11
GAF domain-like EAL domain-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Zinc beta-ribbon Zinc beta-ribbon 11
GspK insert domain-like RuvA domain 2-like 11
Acyl-CoA N-acyltransferases (Nat) Glutathione synthetase ATP-binding domain-like 11
lambda repressor-like DNA-binding domains PYP-like sensor domain (PAS domain) 11
Class II aaRS and biotin synthetases Translation proteins 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Subtilisin-like Metalloproteases ("zincins"), catalytic domain 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Periplasmic binding protein-like II Nucleotide cyclase 11
WD40 repeat-like MetI-like 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Barwin-like endoglucanases Sporulation related repeat 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Zinc beta-ribbon DNA primase core 11
Nqo5-like HydB/Nqo4-like 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
P-loop containing nucleoside triphosphate hydrolases alpha/beta-Hydrolases 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
SGNH hydrolase Autotransporter 11
RNase III domain-like dsRNA-binding domain-like 11
Radical SAM enzymes RuvA domain 2-like 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
Nudix Nudix 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Nucleic acid-binding proteins BRCT domain 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Fic-like "Winged helix" DNA-binding domain 11
Phoshotransferase/anion transport protein Phosphoenolpyruvate/pyruvate domain 11
E set domains alpha/beta-Hydrolases 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
PheT/TilS domain Putative DNA-binding domain 11
TGS-like Class II aaRS ABD-related 11
GAF domain-like Phosphohistidine domain 11
cAMP-binding domain-like CBS-domain pair 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
RuvA domain 2-like BRCT domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Cytochrome c Quinohemoprotein amine dehydrogenase A chain, domain 3 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
ADC-like Flavoproteins 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
post-HMGL domain-like Single hybrid motif 11
Bacterial muramidases Lysozyme-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Nucleic acid-binding proteins GAD domain-like 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
CalX-like beta-Roll 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Pectin lyase-like Pectin lyase-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
CheY-like EAL domain-like 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
S-adenosyl-L-methionine-dependent methyltransferases FAD-linked reductases, C-terminal domain 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
PreATP-grasp domain Single hybrid motif 11
Acyl-CoA dehydrogenase C-terminal domain-like ACP-like 11
CheY-like TPR-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Tricorn protease N-terminal domain ParB/Sulfiredoxin 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
UROD/MetE-like UROD/MetE-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
RuvA domain 2-like JAB1/MPN domain 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
JAB1/MPN domain Cysteine proteinases 11
Homocysteine S-methyltransferase Methionine synthase domain 11
CheY-like HD-domain/PDEase-like 11
PreATP-grasp domain PreATP-grasp domain 11
Ribonuclease H-like RuvA domain 2-like 11
Acetyl-CoA synthetase-like Thioesterase/thiol ester dehydrase-isomerase 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Glucose permease domain IIB Glucose permease domain IIB 11
beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
vWA-like TPR-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Putative DNA-binding domain Translation proteins 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Protein kinase-like (PK-like) PLP-dependent transferases 11
ISP domain FAD/NAD(P)-binding domain 11
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 11
Acyl-CoA dehydrogenase NM domain-like ACP-like 11
PurS-like PurM N-terminal domain-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
ARM repeat TPR-like 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
OMPA-like TSP type-3 repeat 11
Nucleotidylyl transferase YegP-like 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
Acetyl-CoA synthetase-like FMN-dependent nitroreductase-like 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
ALDH-like Acetyl-CoA synthetase-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Chorismate mutase II ACT-like 11
MFS general substrate transporter MFS general substrate transporter 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
NTF2-like Homeodomain-like 11
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Caspase-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Phoshotransferase/anion transport protein HPr-like 11
NTF2-like Sec-C motif 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Ribonuclease H-like HRDC-like 11
Cupredoxins Cytochrome c 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
PPK N-terminal domain-like PHP14-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
PurS-like Class I glutamine amidotransferase-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Duplicated hybrid motif HPr-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Six-hairpin glycosidases Terpenoid cyclases/Protein prenyltransferases 11
ACT-like Homeodomain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
FMN-binding split barrel Ferredoxin reductase-like, C-terminal NADP-linked domain 11
NAD(P)-binding Rossmann-fold domains EPT/RTPC-like 11
S-adenosyl-L-methionine-dependent methyltransferases FAD/NAD(P)-binding domain 11
PHP14-like Phospholipase D/nuclease 11
CalX-like vWA-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
Cytochrome c Periplasmic binding protein-like I 11
ALDH-like Thioesterase/thiol ester dehydrase-isomerase 11
Rudiment single hybrid motif Single hybrid motif 11
Sensory domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Single hybrid motif Single hybrid motif 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
CoA-dependent acyltransferases Thiolase-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
Homeodomain-like DNA-glycosylase 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Carbamate kinase-like ACT-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Ribokinase-like Nucleotidylyl transferase 11
Tex N-terminal region-like Ribonuclease H-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
ClpP/crotonase NfeD domain-like 11
ACT-like PYP-like sensor domain (PAS domain) 11
PTS system IIB component-like PTS system IIB component-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Lysozyme-like LysM domain 11
FAD-linked oxidoreductase ALDH-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
YajQ-like YajQ-like 11
Carbamate kinase-like PUA domain-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Translation proteins ThrRS/AlaRS common domain 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
ACP-like FMN-dependent nitroreductase-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
DNA-glycosylase Nudix 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Methionine synthase domain Methionine synthase activation domain-like 11
Duplicated hybrid motif Phosphoenolpyruvate/pyruvate domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Protein kinase-like (PK-like) Protein kinase-like (PK-like) 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 11
FMN-binding split barrel UbiD C-terminal domain-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Sensory domain-like HAMP domain-like 11
SCP-like Clavaminate synthase-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Periplasmic binding protein-like II OmpA-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Sm-like ribonucleoproteins cAMP-binding domain-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
MesJ substrate recognition domain-like PheT/TilS domain 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Quinohemoprotein amine dehydrogenase A chain, domain 3 E set domains 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
DNA primase core DNA primase DnaG, C-terminal domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
"Winged helix" DNA-binding domain MOP-like 11
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
PUA domain-like alpha/beta knot 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Globin-like Riboflavin synthase domain-like 11
Nucleotidylyl transferase tRNA-binding arm 11
DNA clamp DNA clamp 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
FMN-binding split barrel 2Fe-2S ferredoxin-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
ACP-like P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Duplicated hybrid motif Phosphohistidine domain 11
Pili subunits Pili subunits 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
CBS-domain pair Nucleotide cyclase 11
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 11
TrkA C-terminal domain-like FAD-binding/transporter-associated domain-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like EPT/RTPC-like 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Formyltransferase FMT C-terminal domain-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
FabD/lysophospholipase-like ACP-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Zn-dependent exopeptidases LysM domain 11
PP2C-like Protein kinase-like (PK-like) 11
CoA-dependent acyltransferases NAD(P)-binding Rossmann-fold domains 11
Phoshotransferase/anion transport protein Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
(Trans)glycosidases Nucleotide-diphospho-sugar transferases 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
CbiG N-terminal domain-like Tetrapyrrole methylase 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Thioredoxin-like Thioredoxin-like 11
Sensory domain-like Nucleotide cyclase 11
Class II aaRS and biotin synthetases GAD domain-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain TPR-like 11
Duplicated hybrid motif Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Nudix "Winged helix" DNA-binding domain 11
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Periplasmic binding protein-like II EAL domain-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Aldolase Single hybrid motif 11
FliG FliG 11
Homeodomain-like TATA-box binding protein-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Sensory domain-like CheY-like 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Ribbon-helix-helix ALDH-like 11
OMPA-like OmpA-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Ribosomal protein L6 Ribosomal protein L6 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
MgtE N-terminal domain-like CBS-domain pair 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Thiolase-like alpha/beta-Hydrolases 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
HRDC-like HRDC-like 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
CheC-like Surface presentation of antigens (SPOA) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Putative DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
GspK insert domain-like GspK insert domain-like 11
GAF domain-like GAF domain-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Riboflavin synthase domain-like 11
Translation proteins Translation proteins 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
Trigger factor ribosome-binding domain FKBP-like 11
YbaK/ProRS associated domain HD-domain/PDEase-like 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
PurS-like FGAM synthase PurL, linker domain 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
ADC-like Riboflavin synthase domain-like 11
PurS-like PurM C-terminal domain-like 11
FMN-binding split barrel "Winged helix" DNA-binding domain 11
Metalloproteases ("zincins"), catalytic domain beta-Roll 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
GroEL equatorial domain-like GroEL apical domain-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
CarD-like TRCF domain-like 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
TGS-like Class II aaRS and biotin synthetases 11
Acetyl-CoA synthetase-like Thiolase-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11

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