SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Sodalis glossinidius str. 'morsitans'

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

551 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2313
Actin-like ATPase domain Actin-like ATPase domain 134
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 131
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 105
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 97
Glutathione synthetase ATP-binding domain-like PreATP-grasp domain 84
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 84
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 71
P-loop containing nucleoside triphosphate hydrolases Translation proteins 76
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 61
lambda repressor-like DNA-binding domains LexA/Signal peptidase 61
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
CheY-like C-terminal effector domain of the bipartite response regulators 62
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 61
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 55
ACT-like ACT-like 55
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 51
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 54
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 44
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 44
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 41
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 43
PLP-binding barrel Alanine racemase C-terminal domain-like 43
PreATP-grasp domain Rudiment single hybrid motif 41
Homodimeric domain of signal transducing histidine kinase CheY-like 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 44
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Homeodomain-like Homeodomain-like 43
Nucleic acid-binding proteins Nucleic acid-binding proteins 43
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 42
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 42
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 43
Alpha-L RNA-binding motif Pseudouridine synthase 41
Nucleic acid-binding proteins RuvA domain 2-like 33
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 32
CheY-like Histidine-containing phosphotransfer domain, HPT domain 33
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
PDZ domain-like PDZ domain-like 33
"Winged helix" DNA-binding domain GAF domain-like 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 32
Nucleotidyltransferase Poly A polymerase C-terminal region-like 33
PurM N-terminal domain-like PurM C-terminal domain-like 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
"Winged helix" DNA-binding domain Chorismate lyase-like 31
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
Phospholipase D/nuclease Phospholipase D/nuclease 33
Triger factor/SurA peptide-binding domain-like FKBP-like 33
Trypsin-like serine proteases PDZ domain-like 33
"Winged helix" DNA-binding domain Actin-like ATPase domain 32
HD-domain/PDEase-like Nucleotidyltransferase 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
Translation proteins EF-G C-terminal domain-like 33
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
CheY-like CheY-like 22
CheY-like P-loop containing nucleoside triphosphate hydrolases 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 22
P-loop containing nucleoside triphosphate hydrolases MOP-like 21
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Formyltransferase FMT C-terminal domain-like 22
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
Single hybrid motif CoA-dependent acyltransferases 22
DNA-binding domain DNA breaking-rejoining enzymes 21
L30e-like alpha/beta knot 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Nucleotidyltransferase TGS-like 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
MetI-like MetI-like 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 22
P-loop containing nucleoside triphosphate hydrolases ACT-like 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
cAMP-binding domain-like "Winged helix" DNA-binding domain 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
Zinc beta-ribbon Zinc beta-ribbon 22
Nucleotidyltransferase ACT-like 22
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Thioredoxin-like GST C-terminal domain-like 22
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Carbamate kinase-like ACT-like 22
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Homeodomain-like Probable bacterial effector-binding domain 21
CBS-domain pair MgtE membrane domain-like 22
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
H-NS histone-like proteins H-NS histone-like proteins 21
HD-domain/PDEase-like ACT-like 22
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 21
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 21
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
PK beta-barrel domain-like PK C-terminal domain-like 21
HD-domain/PDEase-like TGS-like 22
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 21
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 21
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
Lysozyme-like beta-lactamase/transpeptidase-like 22
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 21
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
CheC-like Surface presentation of antigens (SPOA) 21
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
CBS-domain pair FAD-binding/transporter-associated domain-like 21
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 21
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
Thiolase-like Thiolase-like 21
HAMP domain-like CheY-like 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Actin-like ATPase domain HD-domain/PDEase-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 21
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
FliG FliG 11
Chorismate mutase II NAD(P)-binding Rossmann-fold domains 11
Band 7/SPFH domain Band 7/SPFH domain 11
FAD-linked oxidoreductase ALDH-like 11
Formyltransferase NAD(P)-binding Rossmann-fold domains 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Translation proteins ThrRS/AlaRS common domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
LeuD/IlvD-like Aconitase iron-sulfur domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Tex N-terminal region-like RuvA domain 2-like 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 11
DNA clamp DNA clamp 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
RNase III domain-like dsRNA-binding domain-like 11
(Trans)glycosidases Carbohydrate binding domain 11
Homeodomain-like SIS domain 11
FucI/AraA N-terminal and middle domains FucI/AraA C-terminal domain-like 11
PYP-like sensor domain (PAS domain) CheY-like 11
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
Single hybrid motif Single hybrid motif 11
HAD-like Ribosomal protein S5 domain 2-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
HMA, heavy metal-associated domain HAD-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
NTF2-like Sec-C motif 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
RuvA domain 2-like BRCT domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Flavoproteins Riboflavin synthase domain-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
4Fe-4S ferredoxins ADC-like 11
PUA domain-like alpha/beta knot 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Chorismate mutase II Periplasmic binding protein-like II 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
MgtE N-terminal domain-like CBS-domain pair 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
PHP14-like Phospholipase D/nuclease 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
TPR-like TPR-like 11
Periplasmic binding protein-like II GlnB-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Enolase C-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Class II aaRS and biotin synthetases Translation proteins 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Carbamate kinase-like PUA domain-like 11
TGS-like ACT-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Macro domain-like Zn-dependent exopeptidases 11
Ribokinase-like Nucleotidylyl transferase 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Translation proteins PRC-barrel domain 11
PLP-dependent transferases PLP-dependent transferases 11
Ribonuclease H-like Nucleic acid-binding proteins 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Tex N-terminal region-like Ribonuclease H-like 11
CheY-like Methylesterase CheB, C-terminal domain 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Resolvase-like Homeodomain-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
GAF domain-like Nucleotide cyclase 11
Xylose isomerase-like Porins 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Ribonuclease H-like HRDC-like 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
PheT/TilS domain Putative DNA-binding domain 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Periplasmic binding protein-like II ACT-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Ribbon-helix-helix ALDH-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Nucleic acid-binding proteins GAD domain-like 11
"Winged helix" DNA-binding domain MOP-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
HRDC-like HRDC-like 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
MesJ substrate recognition domain-like PheT/TilS domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
PDZ domain-like ClpP/crotonase 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Lysozyme-like LysM domain 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Putative DNA-binding domain Translation proteins 11
PTS system fructose IIA component-like PTS IIb component 11
P-loop containing nucleoside triphosphate hydrolases MFS general substrate transporter 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
LysM domain LysM domain 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
DNA primase core DNA primase DnaG, C-terminal domain 11
Ribonuclease H-like DNA/RNA polymerases 11
Nucleic acid-binding proteins BRCT domain 11
GroES-like NAD(P)-binding Rossmann-fold domains 11
YdgH-like YdgH-like 11
PPK N-terminal domain-like PHP14-like 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 11
PurS-like Class I glutamine amidotransferase-like 11
2Fe-2S ferredoxin-like ADC-like 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
UROD/MetE-like UROD/MetE-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Ribosomal protein L6 Ribosomal protein L6 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 11
RuvA domain 2-like RuvA domain 2-like 11
Galactose mutarotase-like E set domains 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
TGS-like Class II aaRS and biotin synthetases 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
TrkA C-terminal domain-like FAD-binding/transporter-associated domain-like 11
Zinc beta-ribbon DNA primase core 11
Ribulose-phoshate binding barrel Ribulose-phoshate binding barrel 11
P-loop containing nucleoside triphosphate hydrolases Lysozyme-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Nucleotidylyl transferase tRNA-binding arm 11
PreATP-grasp domain PreATP-grasp domain 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
ACT-like Formyltransferase 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
Ribonuclease H-like RuvA domain 2-like 11
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Nucleotide cyclase EAL domain-like 11
LysM domain Invasin/intimin cell-adhesion fragments 11
Cupredoxins Cupredoxins 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
CheY-like Homeodomain-like 11
ALDH-like Dehydroquinate synthase-like 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Chorismate mutase II 6-phosphogluconate dehydrogenase C-terminal domain-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases beta-lactamase/transpeptidase-like 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
PurS-like FGAM synthase PurL, linker domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Nucleotide-diphospho-sugar transferases Glucose permease domain IIB 11
Pseudouridine synthase PUA domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
"Winged helix" DNA-binding domain MukF C-terminal domain-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
PTS system IIB component-like Phoshotransferase/anion transport protein 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
Chorismate mutase II ACT-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
GAF domain-like Phosphohistidine domain 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Nqo5-like HydB/Nqo4-like 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
P-loop containing nucleoside triphosphate hydrolases Acyl-CoA N-acyltransferases (Nat) 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
PurS-like PurM C-terminal domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
MFS general substrate transporter MFS general substrate transporter 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Glucose permease domain IIB Duplicated hybrid motif 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Cytidine deaminase-like Cytidine deaminase-like 11
Calcium ATPase, transmembrane domain M HAD-like 11
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Calcium ATPase, transduction domain A HAD-like 11
PIN domain-like Ribonuclease H-like 11
Class I glutamine amidotransferase-like Homeodomain-like 11
(Trans)glycosidases Chitinase insertion domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
Regulatory protein AraC Homeodomain-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Hsp33 domain HSP33 redox switch-like 11
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 11
ACT-like PYP-like sensor domain (PAS domain) 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
OMPA-like OmpA-like 11
Translation proteins Translation proteins 11
DeoB insert domain-like Alkaline phosphatase-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
FMT C-terminal domain-like NAD(P)-binding Rossmann-fold domains 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
DNA-glycosylase Nudix 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Periplasmic binding protein-like II Lysozyme-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
ACT-like Homeodomain-like 11
Phage tail proteins Phage tail proteins 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Trigger factor ribosome-binding domain FKBP-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
PIN domain-like DNA/RNA polymerases 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Poly A polymerase C-terminal region-like ACT-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
CarD-like TRCF domain-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
PurS-like PurM N-terminal domain-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
TGS-like ThrRS/AlaRS common domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 11
GroEL equatorial domain-like GroEL apical domain-like 11
Ribbon-helix-helix Replication modulator SeqA, C-terminal DNA-binding domain 11
ClpP/crotonase ClpP/crotonase 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases Protein kinase-like (PK-like) 11
FKBP-like FKBP-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
ACT-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Poly A polymerase C-terminal region-like HD-domain/PDEase-like 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Chitinase insertion domain Carbohydrate binding domain 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
TGS-like Class II aaRS ABD-related 11
HisI-like all-alpha NTP pyrophosphatases 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11

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