SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in alpha proteobacterium HIMB5

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

364 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 122
Folate-binding domain Aminomethyltransferase beta-barrel domain 105
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 83
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 76
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 74
P-loop containing nucleoside triphosphate hydrolases MOP-like 71
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 64
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 63
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 63
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 61
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 64
FAD/NAD(P)-binding domain Folate-binding domain 52
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 52
Actin-like ATPase domain Actin-like ATPase domain 52
GroES-like NAD(P)-binding Rossmann-fold domains 41
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 43
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 42
P-loop containing nucleoside triphosphate hydrolases Translation proteins 44
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 42
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 43
MetI-like MetI-like 33
FAD-linked reductases, C-terminal domain Folate-binding domain 31
PreATP-grasp domain Rudiment single hybrid motif 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 31
CheY-like C-terminal effector domain of the bipartite response regulators 31
PurM N-terminal domain-like PurM C-terminal domain-like 32
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 31
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 31
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
FAD-linked reductases, C-terminal domain Aminomethyltransferase beta-barrel domain 31
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
PLP-binding barrel Alanine racemase C-terminal domain-like 21
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 22
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 21
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Nucleic acid-binding proteins Nucleic acid-binding proteins 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Alpha-L RNA-binding motif Pseudouridine synthase 21
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 22
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Translation proteins EF-G C-terminal domain-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 21
Thiolase-like Thiolase-like 21
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 22
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 21
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 21
Triger factor/SurA peptide-binding domain-like FKBP-like 22
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 21
ACT-like ACT-like 22
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
Single hybrid motif CoA-dependent acyltransferases 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
YrdC/RibB RibA-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
TGS-like Class II aaRS ABD-related 11
S-adenosylmethionine decarboxylase S-adenosyl-L-methionine-dependent methyltransferases 11
Zinc beta-ribbon DNA primase core 11
Nucleic acid-binding proteins RuvA domain 2-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Bacterial muramidases Lysozyme-like 11
Trigger factor ribosome-binding domain FKBP-like 11
Aldolase AFP III-like domain 11
LysM domain LysM domain 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
PDZ domain-like ClpP/crotonase 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 11
TGS-like ACT-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 11
2Fe-2S ferredoxin-like ADC-like 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
GroEL equatorial domain-like GroEL apical domain-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
GroEL-intermediate domain like GroEL apical domain-like 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 11
L30e-like alpha/beta knot 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
C-terminal domain of RNA polymerase alpha subunit Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Formyltransferase FMT C-terminal domain-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Thioredoxin-like Nqo1C-terminal domain-like 11
ISP domain Bet v1-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Periplasmic binding protein-like II ACT-like 11
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
SIS domain CBS-domain pair 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
PreATP-grasp domain PreATP-grasp domain 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
PH0987 N-terminal domain-like Cyclophilin-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
C-terminal domain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Thioredoxin-like Nqo1 middle domain-like 11
Nucleic acid-binding proteins GAD domain-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
MgtE N-terminal domain-like CBS-domain pair 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Nucleotidyltransferase TGS-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
CBS-domain pair MgtE membrane domain-like 11
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
MurE/MurF N-terminal domain MurE/MurF N-terminal domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Carbamate kinase-like PUA domain-like 11
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 11
Concanavalin A-like lectins/glucanases C-type lectin-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Nucleotidyltransferase ACT-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
DNA clamp DNA clamp 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
TPR-like P-loop containing nucleoside triphosphate hydrolases 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 11
TPR-like TPR-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Thioredoxin-like GST C-terminal domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
4Fe-4S ferredoxins ADC-like 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
TGS-like Class II aaRS and biotin synthetases 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Nucleotidylyl transferase tRNA-binding arm 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
PIN domain-like DNA/RNA polymerases 11
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 11
Translation proteins Translation proteins 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
Lysozyme-like beta-lactamase/transpeptidase-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
MetI-like P-loop containing nucleoside triphosphate hydrolases 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
HD-domain/PDEase-like ACT-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 11
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Nucleotide-diphospho-sugar transferases PLP-dependent transferases 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, catalytic domain 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Pectin lyase-like Autotransporter 11
PUA domain-like alpha/beta knot 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
NAD(P)-binding Rossmann-fold domains ACT-like 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
Class II aaRS and biotin synthetases GAD domain-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
YajQ-like YajQ-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Nucleic acid-binding proteins PheT/TilS domain 11
Ribosomal protein L6 Ribosomal protein L6 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
TGS-like ThrRS/AlaRS common domain 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
CheY-like P-loop containing nucleoside triphosphate hydrolases 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
GIY-YIG endonuclease RuvA domain 2-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Pectin lyase-like Pectin lyase-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Ribonuclease H-like DNA/RNA polymerases 11
Translation proteins ThrRS/AlaRS common domain 11
Class II aaRS and biotin synthetases Translation proteins 11
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Single hybrid motif Trimeric LpxA-like enzymes 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
PIN domain-like Ribonuclease H-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
CheY-like Homeodomain-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
HD-domain/PDEase-like TGS-like 11
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
Carbamate kinase-like ACT-like 11
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Cytochrome c Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 11
PLP-dependent transferases PLP-dependent transferases 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
PheT/TilS domain Putative DNA-binding domain 11
Single hybrid motif TK C-terminal domain-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
Nucleotidylyl transferase Riboflavin kinase-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
RuvA domain 2-like BRCT domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Nucleic acid-binding proteins BRCT domain 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Trypsin-like serine proteases PDZ domain-like 11

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