SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Bacteriovorax marinus SJ

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

541 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2811
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2414
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 151
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 117
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 96
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 96
C-terminal effector domain of the bipartite response regulators CheY-like 92
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 96
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 93
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 81
Actin-like ATPase domain Actin-like ATPase domain 83
P-loop containing nucleoside triphosphate hydrolases Translation proteins 85
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 85
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 76
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 73
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 75
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 73
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 73
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 61
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 64
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 65
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 64
Thiolase-like Thiolase-like 61
Homodimeric domain of signal transducing histidine kinase CheY-like 65
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 51
Translation proteins EF-G C-terminal domain-like 53
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 53
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 54
Cytochrome c Cytochrome c 54
Phospholipase D/nuclease Phospholipase D/nuclease 54
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 53
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 52
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 53
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 44
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 42
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 42
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
Class II aaRS and biotin synthetases Class II aaRS ABD-related 43
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 41
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 43
PLP-binding barrel Alanine racemase C-terminal domain-like 43
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
GroES-like NAD(P)-binding Rossmann-fold domains 42
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 42
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 41
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 42
Thioredoxin-like GST C-terminal domain-like 41
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 33
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 32
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
PreATP-grasp domain Rudiment single hybrid motif 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Putative DNA-binding domain Cobalamin (vitamin B12)-binding domain 31
RuvA domain 2-like Nucleic acid-binding proteins 33
FKBP-like Triger factor/SurA peptide-binding domain-like 33
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 31
CheY-like Homeodomain-like 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
GAF domain-like Homodimeric domain of signal transducing histidine kinase 32
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 32
PDZ domain-like ClpP/crotonase 32
CheY-like P-loop containing nucleoside triphosphate hydrolases 33
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 32
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 31
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
PUA domain-like Ribosomal protein S5 domain 2-like 32
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 32
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 22
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 22
Alpha-L RNA-binding motif Pseudouridine synthase 22
PKD domain PKD domain 22
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 22
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 22
ClpP/crotonase ClpP/crotonase 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 22
PLP-dependent transferases PLP-dependent transferases 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
HAD-like Calcium ATPase, transmembrane domain M 22
Thioredoxin-like Thioredoxin-like 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 22
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 21
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
P-loop containing nucleoside triphosphate hydrolases TrpR-like 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Nucleic acid-binding proteins Nucleic acid-binding proteins 22
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 21
Calcium ATPase, transduction domain A HAD-like 22
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 21
TPR-like TPR-like 22
Translation proteins Ribosomal protein S5 domain 2-like 21
ParB/Sulfiredoxin KorB DNA-binding domain-like 21
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
Lysozyme-like LysM domain 22
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 22
PurM N-terminal domain-like PurM C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases HRDC-like 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 22
Heme-dependent peroxidases Heme-dependent peroxidases 21
Single hybrid motif CoA-dependent acyltransferases 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 21
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 21
2Fe-2S ferredoxin-like alpha-helical ferredoxin 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 22
HMA, heavy metal-associated domain HAD-like 22
Lysozyme-like beta-lactamase/transpeptidase-like 22
PYP-like sensor domain (PAS domain) CheY-like 22
TPR-like Lysozyme-like 21
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 22
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 22
Ribonuclease H-like DNA/RNA polymerases 22
GAF domain-like Homeodomain-like 22
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Translation proteins PRC-barrel domain 11
GroEL-intermediate domain like GroEL apical domain-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Tricorn protease N-terminal domain Integrin alpha N-terminal domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Zn-binding ribosomal proteins 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain PreATP-grasp domain 11
CarD-like TRCF domain-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
PRC-barrel domain CBS-domain pair 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Voltage-gated potassium channels cAMP-binding domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Class I glutamine amidotransferase-like PreATP-grasp domain 11
Single hybrid motif Single hybrid motif 11
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 11
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 11
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 11
DNA clamp DNA clamp 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
HD-domain/PDEase-like ACT-like 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Thioredoxin-like Class I glutamine amidotransferase-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Glutathione synthetase ATP-binding domain-like TrkA C-terminal domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
ALDH-like Thioesterase/thiol ester dehydrase-isomerase 11
RNase III domain-like dsRNA-binding domain-like 11
Tricorn protease domain 2 PDZ domain-like 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Methylglyoxal synthase-like 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
CheY-like HD-domain/PDEase-like 11
Trypsin-like serine proteases Collagen-binding domain 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
Carbamate kinase-like ACT-like 11
Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like 11
Collagen-binding domain Collagen-binding domain 11
Translation proteins Translation proteins 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 11
Trypsin-like serine proteases TPR-like 11
LysM domain LysM domain 11
Nucleotidylyl transferase tRNA-binding arm 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
SMAD/FHA domain SMAD/FHA domain 11
TPR-like C-terminal effector domain of the bipartite response regulators 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
GAF domain-like HD-domain/PDEase-like 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Cadherin-like Tricorn protease N-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases CheY-like 11
Cadherin-like Galactose oxidase, central domain 11
Trypsin-like serine proteases Ankyrin repeat 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Protease propeptides/inhibitors Subtilisin-like 11
TPR-like Periplasmic binding protein-like I 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Molybdenum cofactor biosynthesis protein C, MoaC Nucleotide-diphospho-sugar transferases 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Nucleotide-diphospho-sugar transferases Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Tricorn protease N-terminal domain Tricorn protease domain 2 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Ribosomal protein L6 Ribosomal protein L6 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
Activating enzymes of the ubiquitin-like proteins Rhodanese/Cell cycle control phosphatase 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Tricorn protease domain 2 ClpP/crotonase 11
RuvA domain 2-like RuvA domain 2-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Nqo5-like HydB/Nqo4-like 11
P-loop containing nucleoside triphosphate hydrolases MOP-like 11
CBS-domain pair FAD-binding/transporter-associated domain-like 11
Fic-like "Winged helix" DNA-binding domain 11
Purple acid phosphatase, N-terminal domain Metallo-dependent phosphatases 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Folate-binding domain TrmE connector domain 11
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Tex N-terminal region-like RuvA domain 2-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
P-loop containing nucleoside triphosphate hydrolases Cobalamin (vitamin B12)-dependent enzymes 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Ribosomal protein S6 Ribosomal protein S18 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
lambda repressor-like DNA-binding domains RmlC-like cupins 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
P-loop containing nucleoside triphosphate hydrolases Microbial and mitochondrial ADK, insert "zinc finger" domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Ribonuclease H-like RuvA domain 2-like 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
beta-lactamase/transpeptidase-like Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Nucleic acid-binding proteins GAD domain-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
SMAD/FHA domain Nucleotide cyclase 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Trypsin-like serine proteases PDZ domain-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Class I glutamine amidotransferase-like Carbamoyl phosphate synthetase, large subunit connection domain 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
DNA repair protein MutS, domain III SMR domain-like 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Metalloproteases ("zincins"), catalytic domain Carboxypeptidase regulatory domain-like 11
GAF domain-like CheY-like 11
PheT/TilS domain Putative DNA-binding domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Tricorn protease N-terminal domain Galactose oxidase, central domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Periplasmic binding protein-like II ACT-like 11
Tricorn protease N-terminal domain PDZ domain-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes CBS-domain pair 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
L,D-transpeptidase catalytic domain-like NTF2-like 11
P-loop containing nucleoside triphosphate hydrolases Probable GTPase Der, C-terminal domain 11
Hsp33 domain HSP33 redox switch-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
CheY-like CheY-like 11
Double Clp-N motif Double Clp-N motif 11
GIY-YIG endonuclease RuvA domain 2-like 11
Zn-dependent exopeptidases PDZ domain-like 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
P-loop containing nucleoside triphosphate hydrolases R3H domain 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
CheC-like Surface presentation of antigens (SPOA) 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Histidine-containing phosphotransfer domain, HPT domain CheY-like 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
PDZ domain-like PDZ domain-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Translation proteins ThrRS/AlaRS common domain 11
Molybdopterin synthase subunit MoaE Rhodanese/Cell cycle control phosphatase 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Aldolase AFP III-like domain 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Integrin alpha N-terminal domain Galactose oxidase, central domain 11
Penicillin binding protein dimerisation domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Nudix Metallo-hydrolase/oxidoreductase 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Nucleotidyltransferase TGS-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Cadherin-like Integrin alpha N-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
CheY-like Ankyrin repeat 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Subtilisin-like Spermadhesin, CUB domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
PIN domain-like Ribonuclease H-like 11
Acyl-CoA N-acyltransferases (Nat) Carbon-nitrogen hydrolase 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
ACT-like ACT-like 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
Metallo-dependent phosphatases Multiheme cytochromes 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
PK beta-barrel domain-like 4Fe-4S ferredoxins 11
cAMP-binding domain-like "Winged helix" DNA-binding domain 11
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
GroES-like GroES-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Chelatase MFS general substrate transporter 11
ACT-like HAD-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
SMAD/FHA domain TPR-like 11
RuvA domain 2-like BRCT domain 11
TPR-like Ankyrin repeat 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
Trigger factor ribosome-binding domain FKBP-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
PA domain PDZ domain-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
YjeF N-terminal domain-like Ribokinase-like 11
Zinc beta-ribbon Zinc beta-ribbon 11
NTF2-like Sec-C motif 11
GAF domain-like PYP-like sensor domain (PAS domain) 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 11
PUA domain-like alpha/beta knot 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Clc chloride channel CBS-domain pair 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidyltransferase ACT-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
PRC-barrel domain MgtE N-terminal domain-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
CheY-like Methylesterase CheB, C-terminal domain 11
Tex N-terminal region-like Ribonuclease H-like 11
Class II aaRS and biotin synthetases SufE/NifU 11
Fibronectin type III Concanavalin A-like lectins/glucanases 11
Cobalamin (vitamin B12)-binding domain P-loop containing nucleoside triphosphate hydrolases 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
L domain-like Galactose oxidase, central domain 11
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
HCP-like HCP-like 11
L30e-like alpha/beta knot 11
Methionine synthase domain Methionine synthase activation domain-like 11
PK C-terminal domain-like 4Fe-4S ferredoxins 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Glutathione synthetase ATP-binding domain-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Cytochrome c Multiheme cytochromes 11
Band 7/SPFH domain Band 7/SPFH domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
NAD(P)-binding Rossmann-fold domains Bet v1-like 11
Zinc beta-ribbon DNA primase core 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
ALDH-like Acetyl-CoA synthetase-like 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
HD-domain/PDEase-like TGS-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Class I glutamine amidotransferase-like Glutathione synthetase ATP-binding domain-like 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
Class I glutamine amidotransferase-like Methylglyoxal synthase-like 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 11
PIN domain-like DNA/RNA polymerases 11
vWA-like TPR-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
FliG FliG 11
Macro domain-like Zn-dependent exopeptidases 11
Cytochrome c oxidase subunit I-like Cytochrome c 11
Radical SAM enzymes PLP-dependent transferases 11
TGS-like ACT-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
SGNH hydrolase SGNH hydrolase 11
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 11
"Winged helix" DNA-binding domain HRDC-like 11
CheY-like TPR-like 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
PA domain Zn-dependent exopeptidases 11
Molybdopterin synthase subunit MoaE Activating enzymes of the ubiquitin-like proteins 11
FAD-linked oxidoreductase ALDH-like 11
Globin-like Riboflavin synthase domain-like 11
DNA methylase specificity domain DNA methylase specificity domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Formyltransferase FMT C-terminal domain-like 11
CheW-like CheW-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Homocysteine S-methyltransferase Methionine synthase domain 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
YrdC/RibB RibA-like 11
Folate-binding domain TPR-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Nucleic acid-binding proteins BRCT domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Folate-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Phosphoenolpyruvate/pyruvate domain 4Fe-4S ferredoxins 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Thioredoxin-like Six-hairpin glycosidases 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
PreATP-grasp domain PreATP-grasp domain 11
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 11
MgtE N-terminal domain-like CBS-domain pair 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Respiratory nitrate reductase 1 gamma chain alpha-helical ferredoxin 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain CheY-like 11
CBS-domain pair CBS-domain pair 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
ISP domain Bet v1-like 11
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Radical SAM enzymes Radical SAM enzymes 11
Aldolase Chorismate mutase II 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Tricorn protease N-terminal domain ClpP/crotonase 11
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 11

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