SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Bacillus sp. JS

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

704 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2412
CheY-like C-terminal effector domain of the bipartite response regulators 223
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 206
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 189
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 171
Actin-like ATPase domain Actin-like ATPase domain 164
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 162
CoA-dependent acyltransferases ACP-like 1510
ACP-like ACP-like 1511
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 149
Acetyl-CoA synthetase-like ACP-like 149
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 142
CoA-dependent acyltransferases CoA-dependent acyltransferases 149
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 134
Thiolase-like Thiolase-like 137
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 131
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 122
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 111
Homeodomain-like Homeodomain-like 117
GroES-like NAD(P)-binding Rossmann-fold domains 112
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 101
ACP-like Thiolase-like 99
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 95
(Trans)glycosidases Glycosyl hydrolase domain 93
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 94
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 85
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 84
PTS-regulatory domain, PRD PTS-regulatory domain, PRD 85
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 88
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 85
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 83
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 72
Thiolase-like NAD(P)-binding Rossmann-fold domains 77
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 73
ACP-like NAD(P)-binding Rossmann-fold domains 77
TPR-like TPR-like 73
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 73
"Winged helix" DNA-binding domain PLP-dependent transferases 71
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 64
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 61
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
PreATP-grasp domain Rudiment single hybrid motif 62
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 64
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 64
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 62
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 62
"Winged helix" DNA-binding domain Chorismate lyase-like 61
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 54
Enolase N-terminal domain-like Enolase C-terminal domain-like 51
"Winged helix" DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 54
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 53
P-loop containing nucleoside triphosphate hydrolases Translation proteins 54
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 51
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 53
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 52
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 51
PTS system IIB component-like Phoshotransferase/anion transport protein 55
LysM domain LysM domain 55
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 51
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 51
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 42
Lysozyme-like beta-lactamase/transpeptidase-like 43
PDZ domain-like Trypsin-like serine proteases 42
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 41
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 43
CoA-dependent acyltransferases Thiolase-like 44
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 43
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 44
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 44
Class II aaRS and biotin synthetases Class II aaRS ABD-related 43
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Thiolase-like FabD/lysophospholipase-like 44
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 41
Single hybrid motif CoA-dependent acyltransferases 41
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 41
SacY-like RNA-binding domain PTS-regulatory domain, PRD 41
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 41
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 41
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 44
FabD/lysophospholipase-like ACP-like 44
CBS-domain pair FAD-binding/transporter-associated domain-like 41
ACT-like ACT-like 42
HAD-like Calcium ATPase, transmembrane domain M 44
ACP-like alpha/beta-Hydrolases 43
Calcium ATPase, transduction domain A HAD-like 44
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
LysM domain Cysteine proteinases 33
Triger factor/SurA peptide-binding domain-like FKBP-like 32
MalF N-terminal region-like MetI-like 32
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 31
NAD(P)-binding Rossmann-fold domains ACT-like 33
Translation proteins EF-G C-terminal domain-like 32
PTS-regulatory domain, PRD PTS system IIB component-like 33
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 33
EF-G C-terminal domain-like EF-G C-terminal domain-like 32
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 32
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 31
PTS-regulatory domain, PRD Phoshotransferase/anion transport protein 33
CoA-dependent acyltransferases NAD(P)-binding Rossmann-fold domains 33
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 32
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 33
Sensory domain-like Sporulation response regulatory protein Spo0B 32
Phospholipase D/nuclease Phospholipase D/nuclease 32
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 32
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 31
"Winged helix" DNA-binding domain PTS-regulatory domain, PRD 33
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 32
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 33
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 32
PurM N-terminal domain-like PurM C-terminal domain-like 32
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 32
Acetyl-CoA synthetase-like Thiolase-like 33
PLP-binding barrel Alanine racemase C-terminal domain-like 32
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 33
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 33
Putative DNA-binding domain Probable bacterial effector-binding domain 31
Aspartate/glutamate racemase Aspartate/glutamate racemase 31
Carbamate kinase-like ACT-like 31
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 33
Regulatory protein AraC Homeodomain-like 31
Glucose permease domain IIB Duplicated hybrid motif 32
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 32
Nucleic acid-binding proteins RuvA domain 2-like 33
Flavoproteins Riboflavin synthase domain-like 32
Alpha-L RNA-binding motif Pseudouridine synthase 31
CoA-dependent acyltransferases alpha/beta-Hydrolases 32
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 31
PYP-like sensor domain (PAS domain) Homeodomain-like 22
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 21
"Winged helix" DNA-binding domain Phoshotransferase/anion transport protein 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
P-loop containing nucleoside triphosphate hydrolases MOP-like 21
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
E set domains (Trans)glycosidases 22
ACP-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 22
LysM domain PGBD-like 21
Penicillin binding protein dimerisation domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 22
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 21
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 22
ThrRS/AlaRS common domain Class II aaRS ABD-related 21
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
ParB/Sulfiredoxin KorB DNA-binding domain-like 21
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 22
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 21
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
"Winged helix" DNA-binding domain GAF domain-like 21
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Nucleotidylyl transferase Alpha-L RNA-binding motif 21
ClpP/crotonase ClpP/crotonase 21
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 21
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 22
Homeodomain-like SIS domain 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 21
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 22
CheC-like Surface presentation of antigens (SPOA) 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Serine metabolism enzymes domain ACT-like 22
Cytochrome P450 Ferredoxin reductase-like, C-terminal NADP-linked domain 21
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 21
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 21
ClpP/crotonase PGBD-like 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
"Winged helix" DNA-binding domain CBS-domain pair 22
PDZ domain-like PGBD-like 21
CoA-dependent acyltransferases FabD/lysophospholipase-like 22
PreATP-grasp domain PreATP-grasp domain 22
Bacterial adhesins Bacterial adhesins 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 22
LysM domain (Trans)glycosidases 22
(Trans)glycosidases Class I glutamine amidotransferase-like 21
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 22
HMA, heavy metal-associated domain HAD-like 22
TGS-like Class II aaRS and biotin synthetases 21
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 21
TGS-like ThrRS/AlaRS common domain 21
HAD-like Acyl-CoA N-acyltransferases (Nat) 22
PUA domain-like Nucleotidylyl transferase 21
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 21
Cytochrome P450 Flavoproteins 21
beta-lactamase/transpeptidase-like Penicillin-binding protein 2x (pbp-2x), c-terminal domain 22
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 21
HAMP domain-like PYP-like sensor domain (PAS domain) 21
N-acetylmuramoyl-L-alanine amidase-like LysM domain 21
lambda repressor-like DNA-binding domains SinR repressor dimerisation domain-like 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Cytochrome P450 Riboflavin synthase domain-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 21
L30e-like alpha/beta knot 21
PYP-like sensor domain (PAS domain) Sporulation response regulatory protein Spo0B 21
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 22
S-adenosyl-L-methionine-dependent methyltransferases ACP-like 22
PDZ domain-like ClpP/crotonase 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Ribonuclease H-like Nucleic acid-binding proteins 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Carbamate kinase-like PUA domain-like 21
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 22
"Winged helix" DNA-binding domain PTS system IIB component-like 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
Sensory domain-like PYP-like sensor domain (PAS domain) 21
Protease propeptides/inhibitors Subtilisin-like 22
TGS-like Class II aaRS ABD-related 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 21
S-adenosyl-L-methionine-dependent methyltransferases Thiolase-like 22
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 21
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 21
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
PYP-like sensor domain (PAS domain) Nucleotide cyclase 11
NTF2-like Penicillin binding protein dimerisation domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
RuvA domain 2-like BRCT domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Lamin A/C globular tail domain Metallo-dependent phosphatases 11
Ribonuclease H-like DNA/RNA polymerases 11
PUA domain-like alpha/beta knot 11
Rudiment single hybrid motif post-HMGL domain-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Ribonuclease H-like RuvA domain 2-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase Acyl-CoA N-acyltransferases (Nat) 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 11
Hsp33 domain HSP33 redox switch-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Nucleotidyltransferase ACT-like 11
Sec-C motif Cyclin-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
CheY-binding domain of CheA CheW-like 11
"Winged helix" DNA-binding domain Thioesterase/thiol ester dehydrase-isomerase 11
DNA methylase specificity domain DNA methylase specificity domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
PK C-terminal domain-like Phosphohistidine domain 11
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
"Winged helix" DNA-binding domain Actin-like ATPase domain 11
Ribonuclease H-like TPR-like 11
Subtilisin-like Carboxypeptidase regulatory domain-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Translation proteins ThrRS/AlaRS common domain 11
PDZ domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
NAD(P)-binding Rossmann-fold domains P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase tRNA-binding arm 11
RuvA domain 2-like JAB1/MPN domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
PreATP-grasp domain Aldolase 11
Thiolase-like HAD-like 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
Aldolase AFP III-like domain 11
CheY-like Homeodomain-like 11
Thioredoxin-like Six-hairpin glycosidases 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Nucleotidyltransferase PAP/OAS1 substrate-binding domain 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
CBS-domain pair Thioesterase/thiol ester dehydrase-isomerase 11
Cna protein B-type domain Cna protein B-type domain 11
"Winged helix" DNA-binding domain Phospholipase D/nuclease 11
YojJ-like RuvA domain 2-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
P-loop containing nucleoside triphosphate hydrolases PTS-regulatory domain, PRD 11
Thiolase-like alpha/beta-Hydrolases 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
PIN domain-like DNA/RNA polymerases 11
Tex N-terminal region-like RuvA domain 2-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
DNA clamp DNA clamp 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
PreATP-grasp domain post-HMGL domain-like 11
Bacterial adhesins Cna protein B-type domain 11
Prismane protein-like ACP-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
PYP-like sensor domain (PAS domain) SpoIIaa-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 11
CoA-dependent acyltransferases HAD-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
GroEL equatorial domain-like GroEL apical domain-like 11
PIN domain-like Ribonuclease H-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
"Winged helix" DNA-binding domain Putative transcriptional regulator TM1602, C-terminal domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
"Winged helix" DNA-binding domain Periplasmic binding protein-like I 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
TGS-like ACT-like 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
cAMP-binding domain-like "Winged helix" DNA-binding domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
TPR-like Hypothetical protein MPN330 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Gamma-glutamyl cyclotransferase-like Gamma-glutamyl cyclotransferase-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Acyl-CoA N-acyltransferases (Nat) Thioredoxin-like 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
UROD/MetE-like UROD/MetE-like 11
Rhomboid-like TPR-like 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
4Fe-4S ferredoxins ADC-like 11
Zn-dependent exopeptidases Sporulation related repeat 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Subtilisin-like Concanavalin A-like lectins/glucanases 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Thiolase-like Prismane protein-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
CoA-dependent acyltransferases Acyl-CoA N-acyltransferases (Nat) 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins Metallo-dependent phosphatases 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Homeodomain-like Probable bacterial effector-binding domain 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Quinoprotein alcohol dehydrogenase-like Quinoprotein alcohol dehydrogenase-like 11
Cupredoxins Cupredoxins 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
FucI/AraA N-terminal and middle domains FucI/AraA C-terminal domain-like 11
Staphylococcal nuclease Metallo-dependent phosphatases 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
ACP-like Acyl-CoA N-acyltransferases (Nat) 11
Nucleic acid-binding proteins Staphylococcal nuclease 11
"Winged helix" DNA-binding domain PTS system fructose IIA component-like 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Nucleotidyltransferase PHP domain-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
RNase III domain-like dsRNA-binding domain-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
"Winged helix" DNA-binding domain NosL/MerB-like 11
"Winged helix" DNA-binding domain HRDC-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
PYP-like sensor domain (PAS domain) EAL domain-like 11
beta-lactamase/transpeptidase-like Fibronectin type III 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
Galactose-binding domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
HD-domain/PDEase-like Nucleotidyltransferase 11
KaiA/RbsU domain PP2C-like 11
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Hypothetical protein SAV1430 ARM repeat 11
CBS-domain pair MgtE membrane domain-like 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
HprK N-terminal domain-like CBS-domain pair 11
Aldolase post-HMGL domain-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
UraD-Like Tetrahydrobiopterin biosynthesis enzymes-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Aldolase Single hybrid motif 11
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
DNA polymerase beta, N-terminal domain-like Nucleotidyltransferase 11
PHP domain-like RuvA domain 2-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
GAF domain-like Homeodomain-like 11
Cysteine proteinases Cysteine proteinases 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
PYP-like sensor domain (PAS domain) PP2C-like 11
Macro domain-like Zn-dependent exopeptidases 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NagB/RpiA/CoA transferase-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
DNA primase core N-terminal domain of DnaB helicase 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
Nucleic acid-binding proteins HD-domain/PDEase-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 11
GAF domain-like GAF domain-like 11
Class II aaRS and biotin synthetases SufE/NifU 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Nucleotide cyclase EAL domain-like 11
"Winged helix" DNA-binding domain HprK N-terminal domain-like 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Cystatin/monellin Cystatin/monellin 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
MFS general substrate transporter MFS general substrate transporter 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
HD-domain/PDEase-like TGS-like 11
Acetyl-CoA synthetase-like FabD/lysophospholipase-like 11
(Trans)glycosidases Carbohydrate-binding domain 11
Class II aaRS and biotin synthetases Translation proteins 11
Lysozyme-like Cysteine proteinases 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase CoA-dependent acyltransferases 11
Trigger factor ribosome-binding domain FKBP-like 11
Periplasmic binding protein-like II ACT-like 11
Respiratory nitrate reductase 1 gamma chain alpha-helical ferredoxin 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Translation proteins Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases Obg GTP-binding protein C-terminal domain 11
Putative DNA-binding domain Antibiotic binding domain of TipA-like multidrug resistance regulators 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Tex N-terminal region-like Ribonuclease H-like 11
FabD/lysophospholipase-like HAD-like 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
Translation proteins PRC-barrel domain 11
HprK N-terminal domain-like Thioesterase/thiol ester dehydrase-isomerase 11
HD-domain/PDEase-like ACT-like 11
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Galactose-binding domain-like SGNH hydrolase 11
Concanavalin A-like lectins/glucanases Carboxypeptidase regulatory domain-like 11
HisI-like all-alpha NTP pyrophosphatases 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Acyl-CoA N-acyltransferases (Nat) Carbon-nitrogen hydrolase 11
Penicillin-binding protein 2x (pbp-2x), c-terminal domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Nucleic acid-binding proteins GAD domain-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
FabD/lysophospholipase-like FMN-linked oxidoreductases 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
MgtE N-terminal domain-like CBS-domain pair 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
Putative DNA-binding domain Periplasmic binding protein-like II 11
ClpP/crotonase NfeD domain-like 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
Globin-like Riboflavin synthase domain-like 11
"Winged helix" DNA-binding domain NAD(P)-binding Rossmann-fold domains 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
RuvA domain 2-like RuvA domain 2-like 11
Acyl-CoA N-acyltransferases (Nat) Nucleotidyltransferase 11
GIY-YIG endonuclease RuvA domain 2-like 11
Pectin lyase-like Pectin lyase-like 11
Carboxypeptidase regulatory domain-like Carboxypeptidase regulatory domain-like 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
EAL domain-like Sensory domain-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
Smc hinge domain Tropomyosin 11
LysM domain Barwin-like endoglucanases 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
GAF domain-like Nucleotide cyclase 11
Galactose-binding domain-like Homodimeric domain of signal transducing histidine kinase 11
Metallo-dependent phosphatases Metallo-dependent phosphatases 11
Nucleotidyltransferase TGS-like 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Rudiment single hybrid motif Single hybrid motif 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotide-binding domain ISP domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Homeodomain-like "Helical backbone" metal receptor 11
EAL domain-like HD-domain/PDEase-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
DNA polymerase beta, N-terminal domain-like PHP domain-like 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Zinc beta-ribbon DNA primase core 11
ACP-like HAD-like 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
Rhodanese/Cell cycle control phosphatase Metallo-hydrolase/oxidoreductase 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
DeoB insert domain-like Alkaline phosphatase-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase HAD-like 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
RmlC-like cupins Homeodomain-like 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
FabD/lysophospholipase-like Acyl-CoA N-acyltransferases (Nat) 11
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
CheY-like Methylesterase CheB, C-terminal domain 11
4Fe-4S ferredoxins ARM repeat 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
PDZ domain-like Ribosomal protein S5 domain 2-like 11
AraD/HMP-PK domain-like NAD(P)-binding Rossmann-fold domains 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Lysozyme-like Fibronectin type III 11
LysM domain L,D-transpeptidase catalytic domain-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Cytochrome c 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Thioredoxin-like Thioredoxin-like 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
Formyltransferase FMT C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
P-loop containing nucleoside triphosphate hydrolases Tropomyosin 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
YajQ-like YajQ-like 11
Nucleic acid-binding proteins BRCT domain 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
FabD/lysophospholipase-like FabD/lysophospholipase-like 11
Prismane protein-like NAD(P)-binding Rossmann-fold domains 11
ACT-like Formyltransferase 11
Thiolase-like Acyl-CoA N-acyltransferases (Nat) 11
FliG FliG 11
Staphylococcal nuclease 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
NTF2-like beta-lactamase/transpeptidase-like 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
CheY-like "Winged helix" DNA-binding domain 11
FMN-binding split barrel UbiD C-terminal domain-like 11
PTS-regulatory domain, PRD PTS system fructose IIA component-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
vWA-like vWA-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
Aldolase Nucleotide-diphospho-sugar transferases 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
TATA-box binding protein-like DNA-glycosylase 11
post-HMGL domain-like Single hybrid motif 11
"Winged helix" DNA-binding domain PRTase-like 11
2Fe-2S ferredoxin-like ADC-like 11
Cupredoxins Cytochrome c 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
SirA-like Rhodanese/Cell cycle control phosphatase 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
NAD(P)-binding Rossmann-fold domains PYP-like sensor domain (PAS domain) 11
CheW-like CheY-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
DNA-glycosylase Nudix 11
Homodimeric domain of signal transducing histidine kinase CheY-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
S-adenosyl-L-methionine-dependent methyltransferases alpha/beta-Hydrolases 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
Rudiment single hybrid motif Aldolase 11
Barwin-like endoglucanases PHL pollen allergen 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases PTS system fructose IIA component-like 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
Obg GTP-binding protein N-terminal domain Obg GTP-binding protein C-terminal domain 11
PA domain Subtilisin-like 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
6-phosphogluconate dehydrogenase C-terminal domain-like ACT-like 11
Arabinanase/levansucrase/invertase Galactose-binding domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Translation proteins Ribosomal protein S5 domain 2-like 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains S-adenosyl-L-methionine-dependent methyltransferases 11
CarD-like TRCF domain-like 11
PA domain Zn-dependent exopeptidases 11
NAD(P)-binding Rossmann-fold domains Homeodomain-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Nucleic acid-binding proteins 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase FMN-linked oxidoreductases 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
E set domains Glycosyl hydrolase domain 11
GroES-like GroES-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
PK beta-barrel domain-like Phosphohistidine domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Zinc beta-ribbon N-terminal domain of DnaB helicase 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
YrdC/RibB RibA-like 11
Tetrapyrrole methylase HemD-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Galactose-binding domain-like CheY-like 11
Isochorismatase-like hydrolases ACP-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
PreATP-grasp domain Single hybrid motif 11
Tetrapyrrole methylase all-alpha NTP pyrophosphatases 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Homocysteine S-methyltransferase FAD-linked oxidoreductase 11
PheT/TilS domain Putative DNA-binding domain 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
DNA repair protein MutS, domain III SMR domain-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11

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